Wall clock time and date at job start Tue Mar 31 2020 06:27:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46497 * 1 3 3 N 1.27930 * 118.24044 * 2 1 4 4 C 1.31109 * 124.25344 * 179.97438 * 3 2 1 5 5 C 1.47596 * 120.39382 * 179.97438 * 4 3 2 6 6 O 1.21609 * 119.99705 * 179.97438 * 5 4 3 7 7 N 1.34772 * 120.00252 * 359.97438 * 5 4 3 8 8 C 1.39891 * 120.00016 * 175.49319 * 7 5 4 9 9 C 1.38950 * 120.00070 * 35.14403 * 8 7 5 10 10 C 1.37990 * 119.99282 * 179.97438 * 9 8 7 11 11 C 1.38913 * 120.00623 * 0.02562 * 10 9 8 12 12 O 1.35781 * 119.99599 * 179.97438 * 11 10 9 13 13 C 1.34808 * 117.00042 * 5.33927 * 12 11 10 14 14 H 1.07994 * 120.00175 * 354.96529 * 13 12 11 15 15 C 1.38639 * 119.99975 * 174.96552 * 13 12 11 16 16 N 1.31577 * 119.99662 * 0.02562 * 15 13 12 17 17 Si 1.86790 * 120.00029 * 179.97438 * 15 13 12 18 18 H 1.48503 * 109.47411 * 0.02562 * 17 15 13 19 19 H 1.48500 * 109.46925 * 120.00195 * 17 15 13 20 20 H 1.48496 * 109.47554 * 240.00216 * 17 15 13 21 21 C 1.38912 * 120.00736 * 0.22919 * 11 10 9 22 22 C 1.37989 * 120.00365 * 359.49016 * 21 11 10 23 23 C 1.47188 * 119.20994 * 0.24728 * 4 3 2 24 24 C 1.39057 * 122.79844 * 180.29552 * 23 4 3 25 25 C 1.37889 * 119.39469 * 179.73997 * 24 23 4 26 26 C 1.38868 * 120.79401 * 359.73975 * 25 24 23 27 27 C 1.37867 * 120.74458 * 359.96951 * 26 25 24 28 28 C 1.39133 * 119.33887 * 0.02788 * 27 26 25 29 29 C 1.34894 * 118.24301 * 179.97438 * 2 1 3 30 30 O 1.21744 * 120.77113 * 0.02562 * 29 2 1 31 31 H 1.09000 * 109.46973 * 0.02562 * 1 2 3 32 32 H 1.09002 * 109.46636 * 120.00442 * 1 2 3 33 33 H 1.08995 * 109.47388 * 239.99888 * 1 2 3 34 34 H 0.96995 * 119.99714 * 355.49908 * 7 5 4 35 35 H 1.08001 * 120.00540 * 359.95667 * 9 8 7 36 36 H 1.08007 * 119.99865 * 179.97438 * 10 9 8 37 37 H 0.97001 * 119.99529 * 179.97438 * 16 15 13 38 38 H 1.08001 * 119.99742 * 179.72595 * 21 11 10 39 39 H 1.08005 * 120.00700 * 180.25650 * 22 21 11 40 40 H 1.08005 * 120.30248 * 359.45728 * 24 23 4 41 41 H 1.07999 * 119.60374 * 179.75471 * 25 24 23 42 42 H 1.08005 * 119.62779 * 179.97438 * 26 25 24 43 43 H 1.08002 * 120.33210 * 180.02562 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 7 2.0703 1.1270 0.0000 4 6 3.3742 1.2644 0.0005 5 6 3.9835 2.6087 -0.0001 6 8 5.1937 2.7277 0.0008 7 7 3.1986 3.7043 -0.0017 8 6 3.7730 4.9763 0.0929 9 6 4.9980 5.2321 -0.5109 10 6 5.5642 6.4871 -0.4179 11 6 4.9099 7.4945 0.2797 12 8 5.4674 8.7291 0.3715 13 6 6.6001 8.9427 -0.3276 14 1 7.0678 8.1278 -0.8601 15 6 7.1647 10.2084 -0.3630 16 7 6.5952 11.2011 0.2863 17 14 8.7345 10.5042 -1.3310 18 1 9.1713 9.2347 -1.9659 19 1 8.4832 11.5221 -2.3827 20 1 9.7969 10.9910 -0.4148 21 6 3.6877 7.2375 0.8878 22 6 3.1184 5.9843 0.7902 23 6 4.2231 0.0620 -0.0045 24 6 5.6124 0.1208 0.0017 25 6 6.3394 -1.0509 0.0019 26 6 5.7006 -2.2839 0.0015 27 6 4.3243 -2.3647 0.0014 28 6 3.5727 -1.1938 0.0012 29 6 2.1033 -1.1883 0.0005 30 8 1.4765 -2.2321 0.0005 31 1 -0.3633 1.0277 -0.0005 32 1 -0.3633 -0.5139 -0.8900 33 1 -0.3634 -0.5138 0.8899 34 1 2.2355 3.6108 -0.0684 35 1 5.5072 4.4488 -1.0527 36 1 6.5167 6.6859 -0.8868 37 1 6.9904 12.0866 0.2618 38 1 3.1812 8.0196 1.4339 39 1 2.1662 5.7855 1.2595 40 1 6.1175 1.0755 0.0017 41 1 7.4186 -1.0092 0.0027 42 1 6.2886 -3.1899 0.0012 43 1 3.8344 -3.3272 0.0015 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000032480741.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:27:20 Heat of formation + Delta-G solvation = 23.460695 kcal Electronic energy + Delta-G solvation = -30891.031411 eV Core-core repulsion = 26482.851023 eV Total energy + Delta-G solvation = -4408.180388 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 365.121 amu Computer time = 1.11 seconds Orbital eigenvalues (eV) -42.25477 -40.26036 -39.03094 -38.70200 -38.12995 -36.57633 -34.30075 -33.76328 -32.21952 -31.73813 -31.02540 -30.25305 -28.70694 -27.66407 -25.96616 -25.23236 -24.03382 -23.12619 -22.41424 -21.69144 -20.69874 -19.34452 -18.93471 -18.17420 -17.82248 -17.29436 -17.12295 -16.56063 -16.50099 -15.83826 -15.20883 -15.11910 -15.00226 -14.53469 -14.48229 -14.20633 -13.94319 -13.91266 -13.61847 -13.61061 -13.20296 -13.05064 -12.92989 -12.68204 -12.60627 -12.55416 -12.11749 -11.81166 -11.78370 -11.59838 -11.46422 -11.06996 -10.76633 -10.43852 -10.27138 -10.07362 -9.85886 -9.76480 -9.50104 -9.23036 -8.75554 -8.58441 -8.25032 -6.99689 -6.47741 -4.04962 0.07588 0.26640 1.24777 1.73784 2.06898 2.17398 2.30978 2.87289 3.00597 3.13353 3.14027 3.19446 3.44722 3.54398 3.95352 4.06262 4.28840 4.40076 4.52284 4.64366 4.71073 4.81441 4.84722 4.91768 5.06879 5.12161 5.14288 5.21065 5.22769 5.43978 5.62869 5.64132 5.69445 5.79520 5.96997 6.01407 6.11492 6.15268 6.27137 6.44575 6.67672 6.80075 6.94573 7.02820 7.07433 7.26177 7.39810 7.50766 7.71284 7.73976 7.97436 8.16147 8.98134 9.66896 10.70052 Molecular weight = 365.12amu Principal moments of inertia in cm(-1) A = 0.016584 B = 0.002023 C = 0.001828 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1688.017784 B =13836.309697 C =15311.474929 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.085 3.915 2 N -0.364 5.364 3 N -0.202 5.202 4 C 0.067 3.933 5 C 0.584 3.416 6 O -0.512 6.512 7 N -0.634 5.634 8 C 0.026 3.974 9 C -0.061 4.061 10 C -0.221 4.221 11 C 0.149 3.851 12 O -0.175 6.175 13 C -0.390 4.390 14 H 0.094 0.906 15 C 0.039 3.961 16 N -0.861 5.861 17 Si 0.941 3.059 18 H -0.266 1.266 19 H -0.276 1.276 20 H -0.276 1.276 21 C -0.178 4.178 22 C -0.086 4.086 23 C -0.033 4.033 24 C -0.092 4.092 25 C -0.088 4.088 26 C -0.117 4.117 27 C -0.057 4.057 28 C -0.142 4.142 29 C 0.515 3.485 30 O -0.504 6.504 31 H 0.103 0.897 32 H 0.084 0.916 33 H 0.084 0.916 34 H 0.410 0.590 35 H 0.127 0.873 36 H 0.131 0.869 37 H 0.270 0.730 38 H 0.122 0.878 39 H 0.116 0.884 40 H 0.175 0.825 41 H 0.136 0.864 42 H 0.135 0.865 43 H 0.140 0.860 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.811 -24.123 -1.221 25.386 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.055 4.055 2 N -0.185 5.185 3 N -0.026 5.026 4 C -0.114 4.114 5 C 0.368 3.632 6 O -0.386 6.386 7 N -0.278 5.278 8 C -0.066 4.066 9 C -0.080 4.080 10 C -0.241 4.241 11 C 0.095 3.905 12 O -0.078 6.078 13 C -0.466 4.466 14 H 0.111 0.889 15 C -0.166 4.166 16 N -0.496 5.496 17 Si 0.766 3.234 18 H -0.190 1.190 19 H -0.201 1.201 20 H -0.201 1.201 21 C -0.198 4.198 22 C -0.107 4.107 23 C -0.037 4.037 24 C -0.112 4.112 25 C -0.106 4.106 26 C -0.136 4.136 27 C -0.076 4.076 28 C -0.148 4.148 29 C 0.309 3.691 30 O -0.378 6.378 31 H 0.121 0.879 32 H 0.103 0.897 33 H 0.103 0.897 34 H 0.246 0.754 35 H 0.145 0.855 36 H 0.149 0.851 37 H 0.080 0.920 38 H 0.140 0.860 39 H 0.134 0.866 40 H 0.192 0.808 41 H 0.154 0.846 42 H 0.153 0.847 43 H 0.158 0.842 Dipole moment (debyes) X Y Z Total from point charges -8.213 -23.789 -1.044 25.189 hybrid contribution 0.753 -0.577 -0.480 1.063 sum -7.460 -24.366 -1.524 25.528 Atomic orbital electron populations 1.22170 0.73624 1.05386 1.04297 1.46063 1.09386 1.01455 1.61615 1.70191 1.12570 1.11900 1.07954 1.22603 0.87197 0.94688 1.06887 1.17045 0.86316 0.81930 0.77863 1.90681 1.13051 1.84870 1.49980 1.42964 1.10426 1.04006 1.70401 1.17220 0.97922 0.83904 1.07529 1.20853 0.94057 0.96250 0.96877 1.21101 1.02882 0.92992 1.07144 1.19437 0.91697 0.86357 0.93059 1.83974 1.38123 1.24985 1.60697 1.21398 0.99751 0.96262 1.29196 0.88862 1.25303 0.99521 0.94293 0.97447 1.70057 1.39025 1.01172 1.39336 0.85638 0.79890 0.78968 0.78911 1.18999 1.20147 1.20132 1.19995 0.95655 0.97100 1.07062 1.20361 0.99566 0.92351 0.98373 1.19256 0.94841 0.90188 0.99396 1.22110 0.92087 1.01427 0.95546 1.21588 1.01013 0.91952 0.96066 1.21370 0.94019 0.98555 0.99677 1.20940 0.93644 0.97130 0.95879 1.19869 0.91764 0.94571 1.08603 1.19083 0.88658 0.83771 0.77636 1.90870 1.68498 1.30198 1.48264 0.87853 0.89717 0.89712 0.75392 0.85519 0.85092 0.92033 0.85965 0.86578 0.80837 0.84563 0.84740 0.84182 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.09 0.55 10.13 59.85 0.61 1.15 16 2 N -0.36 -3.71 3.62 -68.29 -0.25 -3.96 16 3 N -0.20 -2.15 9.89 34.51 0.34 -1.81 16 4 C 0.07 0.80 7.04 -80.72 -0.57 0.24 16 5 C 0.58 8.05 7.64 -12.44 -0.10 7.96 16 6 O -0.51 -8.15 11.12 5.27 0.06 -8.09 16 7 N -0.63 -8.43 5.32 -10.75 -0.06 -8.49 16 8 C 0.03 0.44 6.30 -83.65 -0.53 -0.09 16 9 C -0.06 -1.14 8.69 -39.41 -0.34 -1.48 16 10 C -0.22 -4.74 9.16 -39.42 -0.36 -5.11 16 11 C 0.15 3.48 6.65 -39.08 -0.26 3.22 16 12 O -0.17 -4.85 9.75 0.01 0.00 -4.85 16 13 C -0.39 -10.67 9.48 30.88 0.29 -10.38 16 14 H 0.09 2.37 5.19 -52.49 -0.27 2.10 16 15 C 0.04 1.05 5.49 -17.51 -0.10 0.95 16 16 N -0.86 -24.81 13.67 55.48 0.76 -24.05 16 17 Si 0.94 20.23 29.55 -169.99 -5.02 15.21 16 18 H -0.27 -5.48 7.11 56.52 0.40 -5.08 16 19 H -0.28 -5.81 7.11 56.52 0.40 -5.41 16 20 H -0.28 -5.82 7.11 56.52 0.40 -5.42 16 21 C -0.18 -3.55 9.98 -39.42 -0.39 -3.94 16 22 C -0.09 -1.43 9.96 -39.41 -0.39 -1.82 16 23 C -0.03 -0.39 5.90 -104.75 -0.62 -1.01 16 24 C -0.09 -1.00 9.36 -39.41 -0.37 -1.37 16 25 C -0.09 -0.73 10.01 -39.48 -0.40 -1.13 16 26 C -0.12 -0.89 10.01 -39.48 -0.40 -1.28 16 27 C -0.06 -0.53 9.71 -39.39 -0.38 -0.91 16 28 C -0.14 -1.62 5.90 -104.83 -0.62 -2.23 16 29 C 0.51 6.10 7.68 -12.68 -0.10 6.01 16 30 O -0.50 -6.71 16.62 5.15 0.09 -6.62 16 31 H 0.10 0.46 8.02 -51.93 -0.42 0.04 16 32 H 0.08 0.48 8.14 -51.93 -0.42 0.06 16 33 H 0.08 0.49 8.14 -51.93 -0.42 0.06 16 34 H 0.41 4.30 8.19 -40.82 -0.33 3.96 16 35 H 0.13 2.29 6.22 -52.49 -0.33 1.96 16 36 H 0.13 2.83 5.63 -52.48 -0.30 2.54 16 37 H 0.27 7.11 8.31 -40.82 -0.34 6.77 16 38 H 0.12 2.31 8.06 -52.49 -0.42 1.89 16 39 H 0.12 1.51 8.06 -52.48 -0.42 1.09 16 40 H 0.17 2.09 5.22 -52.48 -0.27 1.82 16 41 H 0.14 0.80 8.06 -52.49 -0.42 0.38 16 42 H 0.13 0.63 8.06 -52.48 -0.42 0.20 16 43 H 0.14 1.14 7.87 -52.49 -0.41 0.73 16 LS Contribution 373.14 15.07 5.62 5.62 Total: -1.00 -33.10 373.14 -7.48 -40.58 By element: Atomic # 1 Polarization: 11.69 SS G_CDS: -4.00 Total: 7.69 kcal Atomic # 6 Polarization: -6.21 SS G_CDS: -5.01 Total: -11.22 kcal Atomic # 7 Polarization: -39.10 SS G_CDS: 0.80 Total: -38.31 kcal Atomic # 8 Polarization: -19.71 SS G_CDS: 0.14 Total: -19.56 kcal Atomic # 14 Polarization: 20.23 SS G_CDS: -5.02 Total: 15.21 kcal Total LS contribution 5.62 Total: 5.62 kcal Total: -33.10 -7.48 -40.58 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000032480741.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 64.038 kcal (2) G-P(sol) polarization free energy of solvation -33.100 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 30.938 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.477 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.577 kcal (6) G-S(sol) free energy of system = (1) + (5) 23.461 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.11 seconds