Wall clock time and date at job start Tue Mar 31 2020 06:27:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46497 * 1 3 3 N 1.27930 * 118.24044 * 2 1 4 4 C 1.31109 * 124.25344 * 179.97438 * 3 2 1 5 5 C 1.47596 * 120.39382 * 179.97438 * 4 3 2 6 6 O 1.21609 * 119.99705 * 179.97438 * 5 4 3 7 7 N 1.34772 * 120.00252 * 359.97438 * 5 4 3 8 8 C 1.39891 * 120.00016 * 175.49319 * 7 5 4 9 9 C 1.38950 * 120.00070 * 35.14403 * 8 7 5 10 10 C 1.37990 * 119.99282 * 179.97438 * 9 8 7 11 11 C 1.38913 * 120.00623 * 0.02562 * 10 9 8 12 12 O 1.35781 * 119.99599 * 179.97438 * 11 10 9 13 13 C 1.34808 * 117.00042 * 5.33927 * 12 11 10 14 14 H 1.07994 * 120.00175 * 354.96529 * 13 12 11 15 15 C 1.38639 * 119.99975 * 174.96552 * 13 12 11 16 16 N 1.31577 * 119.99662 * 0.02562 * 15 13 12 17 17 Si 1.86790 * 120.00029 * 179.97438 * 15 13 12 18 18 H 1.48503 * 109.47411 * 0.02562 * 17 15 13 19 19 H 1.48500 * 109.46925 * 120.00195 * 17 15 13 20 20 H 1.48496 * 109.47554 * 240.00216 * 17 15 13 21 21 C 1.38912 * 120.00736 * 0.22919 * 11 10 9 22 22 C 1.37989 * 120.00365 * 359.49016 * 21 11 10 23 23 C 1.47188 * 119.20994 * 0.24728 * 4 3 2 24 24 C 1.39057 * 122.79844 * 180.29552 * 23 4 3 25 25 C 1.37889 * 119.39469 * 179.73997 * 24 23 4 26 26 C 1.38868 * 120.79401 * 359.73975 * 25 24 23 27 27 C 1.37867 * 120.74458 * 359.96951 * 26 25 24 28 28 C 1.39133 * 119.33887 * 0.02788 * 27 26 25 29 29 C 1.34894 * 118.24301 * 179.97438 * 2 1 3 30 30 O 1.21744 * 120.77113 * 0.02562 * 29 2 1 31 31 H 1.09000 * 109.46973 * 0.02562 * 1 2 3 32 32 H 1.09002 * 109.46636 * 120.00442 * 1 2 3 33 33 H 1.08995 * 109.47388 * 239.99888 * 1 2 3 34 34 H 0.96995 * 119.99714 * 355.49908 * 7 5 4 35 35 H 1.08001 * 120.00540 * 359.95667 * 9 8 7 36 36 H 1.08007 * 119.99865 * 179.97438 * 10 9 8 37 37 H 0.97001 * 119.99529 * 179.97438 * 16 15 13 38 38 H 1.08001 * 119.99742 * 179.72595 * 21 11 10 39 39 H 1.08005 * 120.00700 * 180.25650 * 22 21 11 40 40 H 1.08005 * 120.30248 * 359.45728 * 24 23 4 41 41 H 1.07999 * 119.60374 * 179.75471 * 25 24 23 42 42 H 1.08005 * 119.62779 * 179.97438 * 26 25 24 43 43 H 1.08002 * 120.33210 * 180.02562 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 7 2.0703 1.1270 0.0000 4 6 3.3742 1.2644 0.0005 5 6 3.9835 2.6087 -0.0001 6 8 5.1937 2.7277 0.0008 7 7 3.1986 3.7043 -0.0017 8 6 3.7730 4.9763 0.0929 9 6 4.9980 5.2321 -0.5109 10 6 5.5642 6.4871 -0.4179 11 6 4.9099 7.4945 0.2797 12 8 5.4674 8.7291 0.3715 13 6 6.6001 8.9427 -0.3276 14 1 7.0678 8.1278 -0.8601 15 6 7.1647 10.2084 -0.3630 16 7 6.5952 11.2011 0.2863 17 14 8.7345 10.5042 -1.3310 18 1 9.1713 9.2347 -1.9659 19 1 8.4832 11.5221 -2.3827 20 1 9.7969 10.9910 -0.4148 21 6 3.6877 7.2375 0.8878 22 6 3.1184 5.9843 0.7902 23 6 4.2231 0.0620 -0.0045 24 6 5.6124 0.1208 0.0017 25 6 6.3394 -1.0509 0.0019 26 6 5.7006 -2.2839 0.0015 27 6 4.3243 -2.3647 0.0014 28 6 3.5727 -1.1938 0.0012 29 6 2.1033 -1.1883 0.0005 30 8 1.4765 -2.2321 0.0005 31 1 -0.3633 1.0277 -0.0005 32 1 -0.3633 -0.5139 -0.8900 33 1 -0.3634 -0.5138 0.8899 34 1 2.2355 3.6108 -0.0684 35 1 5.5072 4.4488 -1.0527 36 1 6.5167 6.6859 -0.8868 37 1 6.9904 12.0866 0.2618 38 1 3.1812 8.0196 1.4339 39 1 2.1662 5.7855 1.2595 40 1 6.1175 1.0755 0.0017 41 1 7.4186 -1.0092 0.0027 42 1 6.2886 -3.1899 0.0012 43 1 3.8344 -3.3272 0.0015 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000032480741.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:27:17 Heat of formation + Delta-G solvation = 2.008535 kcal Electronic energy + Delta-G solvation = -30891.961647 eV Core-core repulsion = 26482.851023 eV Total energy + Delta-G solvation = -4409.110623 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 365.121 amu Computer time = 2.41 seconds Orbital eigenvalues (eV) -43.09949 -41.52827 -40.41116 -39.65104 -39.12281 -38.12500 -35.57545 -34.69828 -34.11322 -32.50237 -31.84636 -31.80398 -29.91232 -28.65388 -27.35922 -26.67568 -24.76230 -24.23608 -23.78616 -22.92700 -21.98106 -20.31726 -20.02719 -19.62261 -19.11927 -18.53186 -17.99731 -17.92256 -17.52590 -16.73407 -16.52706 -16.23186 -16.10604 -15.72287 -15.67669 -15.46505 -15.40452 -15.15606 -14.84936 -14.68903 -14.54735 -14.20744 -14.01573 -13.55361 -13.50795 -13.36167 -13.29127 -13.21285 -13.17249 -12.87948 -12.71870 -12.53517 -12.36635 -12.08602 -11.40607 -11.18431 -11.10893 -10.85047 -10.81427 -10.53548 -10.24545 -9.80579 -9.39263 -8.61394 -8.44770 -6.10972 -0.76690 -0.53550 0.35344 0.57505 0.67931 0.97386 1.37869 1.38941 1.45624 1.55569 1.79626 1.96395 2.19996 2.56607 2.73642 2.85113 3.17651 3.23458 3.42873 3.54294 3.62065 3.84136 4.12472 4.14048 4.16104 4.19965 4.31526 4.34371 4.43436 4.48473 4.51752 4.64572 4.69456 4.70832 4.74439 4.92373 5.07145 5.10696 5.16813 5.28036 5.33253 5.38676 5.46309 5.59186 5.72864 5.75172 6.04929 6.14385 6.20777 6.35974 6.83961 6.99747 7.02751 7.79976 8.78144 Molecular weight = 365.12amu Principal moments of inertia in cm(-1) A = 0.016584 B = 0.002023 C = 0.001828 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1688.017784 B =13836.309697 C =15311.474929 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.075 3.925 2 N -0.362 5.362 3 N -0.184 5.184 4 C 0.052 3.948 5 C 0.590 3.410 6 O -0.533 6.533 7 N -0.627 5.627 8 C 0.057 3.943 9 C -0.069 4.069 10 C -0.227 4.227 11 C 0.110 3.890 12 O -0.227 6.227 13 C -0.410 4.410 14 H 0.100 0.900 15 C -0.022 4.022 16 N -0.918 5.918 17 Si 1.016 2.984 18 H -0.253 1.253 19 H -0.268 1.268 20 H -0.269 1.269 21 C -0.181 4.181 22 C -0.072 4.072 23 C -0.048 4.048 24 C -0.111 4.111 25 C -0.080 4.080 26 C -0.105 4.105 27 C -0.061 4.061 28 C -0.162 4.162 29 C 0.509 3.491 30 O -0.524 6.524 31 H 0.126 0.874 32 H 0.092 0.908 33 H 0.092 0.908 34 H 0.428 0.572 35 H 0.135 0.865 36 H 0.120 0.880 37 H 0.272 0.728 38 H 0.128 0.872 39 H 0.165 0.835 40 H 0.159 0.841 41 H 0.163 0.837 42 H 0.171 0.829 43 H 0.151 0.849 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.528 -27.492 -1.597 28.829 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.063 4.063 2 N -0.183 5.183 3 N -0.009 5.009 4 C -0.127 4.127 5 C 0.375 3.625 6 O -0.408 6.408 7 N -0.273 5.273 8 C -0.036 4.036 9 C -0.089 4.089 10 C -0.247 4.247 11 C 0.059 3.941 12 O -0.133 6.133 13 C -0.486 4.486 14 H 0.118 0.882 15 C -0.219 4.219 16 N -0.557 5.557 17 Si 0.836 3.164 18 H -0.177 1.177 19 H -0.193 1.193 20 H -0.194 1.194 21 C -0.201 4.201 22 C -0.091 4.091 23 C -0.052 4.052 24 C -0.131 4.131 25 C -0.098 4.098 26 C -0.124 4.124 27 C -0.080 4.080 28 C -0.168 4.168 29 C 0.304 3.696 30 O -0.400 6.400 31 H 0.145 0.855 32 H 0.111 0.889 33 H 0.111 0.889 34 H 0.267 0.733 35 H 0.152 0.848 36 H 0.137 0.863 37 H 0.081 0.919 38 H 0.146 0.854 39 H 0.183 0.817 40 H 0.176 0.824 41 H 0.181 0.819 42 H 0.189 0.811 43 H 0.168 0.832 Dipole moment (debyes) X Y Z Total from point charges -8.986 -27.222 -1.424 28.702 hybrid contribution 0.738 0.022 -0.326 0.807 sum -8.247 -27.200 -1.750 28.477 Atomic orbital electron populations 1.22515 0.71419 1.07249 1.05138 1.46357 1.10655 1.00903 1.60336 1.70175 1.11939 1.11991 1.06803 1.22237 0.87892 0.93818 1.08782 1.17235 0.85998 0.82506 0.76713 1.90692 1.14220 1.85379 1.50485 1.42857 1.11347 1.02537 1.70575 1.17324 0.96553 0.85232 1.04497 1.20961 0.95182 0.95266 0.97448 1.21103 1.02678 0.93796 1.07139 1.19970 0.93359 0.85767 0.95005 1.83941 1.39171 1.27259 1.62960 1.21822 1.00284 0.96957 1.29584 0.88239 1.26526 1.03190 0.93711 0.98511 1.70188 1.41495 1.01805 1.42169 0.84561 0.75193 0.79278 0.77415 1.17657 1.19321 1.19398 1.20300 0.94591 0.98778 1.06385 1.20758 1.00857 0.90481 0.97049 1.19298 0.95236 0.90181 1.00437 1.22065 0.92003 1.01891 0.97115 1.21924 1.02324 0.91340 0.94227 1.21761 0.93524 0.99588 0.97500 1.21225 0.94496 0.96925 0.95326 1.20033 0.91781 0.95137 1.09893 1.19265 0.89024 0.83962 0.77360 1.90852 1.68938 1.30815 1.49415 0.85514 0.88908 0.88908 0.73285 0.84777 0.86261 0.91859 0.85409 0.81744 0.82368 0.81926 0.81135 0.83177 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.08 0.77 10.13 127.77 1.29 2.06 16 2 N -0.36 -6.60 3.62 -488.10 -1.77 -8.36 16 3 N -0.18 -3.48 9.89 -44.73 -0.44 -3.92 16 4 C 0.05 1.17 7.04 44.08 0.31 1.48 16 5 C 0.59 15.23 7.64 86.71 0.66 15.90 16 6 O -0.53 -16.50 11.12 -4.06 -0.05 -16.54 16 7 N -0.63 -14.91 5.32 -306.17 -1.63 -16.54 16 8 C 0.06 1.78 6.30 38.20 0.24 2.02 16 9 C -0.07 -2.54 8.69 22.38 0.19 -2.35 16 10 C -0.23 -10.04 9.16 22.37 0.20 -9.83 16 11 C 0.11 5.32 6.65 22.59 0.15 5.47 16 12 O -0.23 -13.37 9.75 -22.86 -0.22 -13.60 16 13 C -0.41 -23.69 9.48 67.92 0.64 -23.05 16 14 H 0.10 5.34 5.19 -2.91 -0.02 5.32 16 15 C -0.02 -1.23 5.49 84.83 0.47 -0.76 16 16 N -0.92 -55.73 13.67 21.61 0.30 -55.44 16 17 Si 1.02 42.80 29.55 68.60 2.03 44.82 16 18 H -0.25 -9.94 7.11 99.48 0.71 -9.23 16 19 H -0.27 -10.82 7.11 99.48 0.71 -10.11 16 20 H -0.27 -10.89 7.11 99.48 0.71 -10.18 16 21 C -0.18 -7.15 9.98 22.37 0.22 -6.92 16 22 C -0.07 -2.17 9.96 22.38 0.22 -1.95 16 23 C -0.05 -1.07 5.90 -19.95 -0.12 -1.19 16 24 C -0.11 -2.29 9.36 22.38 0.21 -2.08 16 25 C -0.08 -1.13 10.01 22.34 0.22 -0.90 16 26 C -0.10 -1.24 10.01 22.33 0.22 -1.02 16 27 C -0.06 -0.99 9.71 22.40 0.22 -0.78 16 28 C -0.16 -3.45 5.90 -20.00 -0.12 -3.57 16 29 C 0.51 11.29 7.68 86.50 0.66 11.96 16 30 O -0.52 -13.22 16.62 -4.49 -0.07 -13.29 16 31 H 0.13 0.68 8.02 -2.39 -0.02 0.66 16 32 H 0.09 0.84 8.14 -2.39 -0.02 0.82 16 33 H 0.09 0.84 8.14 -2.39 -0.02 0.82 16 34 H 0.43 7.35 8.19 -92.71 -0.76 6.59 16 35 H 0.13 4.78 6.22 -2.91 -0.02 4.76 16 36 H 0.12 5.43 5.63 -2.91 -0.02 5.42 16 37 H 0.27 15.11 8.31 -92.71 -0.77 14.34 16 38 H 0.13 4.85 8.06 -2.91 -0.02 4.82 16 39 H 0.17 3.45 8.06 -2.91 -0.02 3.42 16 40 H 0.16 3.76 5.22 -2.91 -0.02 3.74 16 41 H 0.16 1.37 8.06 -2.91 -0.02 1.35 16 42 H 0.17 0.79 8.06 -2.91 -0.02 0.76 16 43 H 0.15 2.10 7.87 -2.91 -0.02 2.08 16 Total: -1.00 -77.40 373.14 4.41 -73.00 By element: Atomic # 1 Polarization: 25.03 SS G_CDS: 0.35 Total: 25.38 kcal Atomic # 6 Polarization: -21.42 SS G_CDS: 5.92 Total: -15.51 kcal Atomic # 7 Polarization: -80.72 SS G_CDS: -3.54 Total: -84.26 kcal Atomic # 8 Polarization: -43.09 SS G_CDS: -0.34 Total: -43.43 kcal Atomic # 14 Polarization: 42.80 SS G_CDS: 2.03 Total: 44.82 kcal Total: -77.40 4.41 -73.00 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000032480741.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 75.005 kcal (2) G-P(sol) polarization free energy of solvation -77.404 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -2.399 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.407 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.996 kcal (6) G-S(sol) free energy of system = (1) + (5) 2.009 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 2.42 seconds