Wall clock time and date at job start Tue Mar 31 2020 06:48:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 C 1.53005 * 109.47170 * 2 1 4 4 C 1.52995 * 109.47053 * 240.00321 * 2 1 3 5 5 N 1.46499 * 109.47036 * 120.00071 * 2 1 3 6 6 C 1.46494 * 119.99969 * 8.34920 * 5 2 1 7 7 C 1.50700 * 109.47211 * 266.16920 * 6 5 2 8 8 C 1.38230 * 120.00071 * 96.77775 * 7 6 5 9 9 C 1.38232 * 120.00209 * 179.97438 * 8 7 6 10 10 C 1.38237 * 119.99890 * 359.97438 * 9 8 7 11 11 C 1.38227 * 119.99961 * 0.27580 * 10 9 8 12 12 C 1.38237 * 119.99855 * 276.75753 * 7 6 5 13 13 C 1.34780 * 119.99715 * 188.35078 * 5 2 1 14 14 O 1.21284 * 119.99887 * 185.59614 * 13 5 2 15 15 C 1.50702 * 120.00076 * 5.58647 * 13 5 2 16 16 O 1.45197 * 109.46935 * 186.57453 * 15 13 5 17 17 C 1.34227 * 117.00297 * 180.02562 * 16 15 13 18 18 O 1.20837 * 119.99683 * 0.02562 * 17 16 15 19 19 C 1.50693 * 120.00637 * 180.02562 * 17 16 15 20 20 S 1.81005 * 109.47454 * 179.97438 * 19 17 16 21 21 C 1.76195 * 100.00124 * 180.02562 * 20 19 17 22 22 H 1.08006 * 119.99932 * 0.02562 * 21 20 19 23 23 C 1.38797 * 120.00067 * 180.02562 * 21 20 19 24 24 N 1.31626 * 120.00292 * 359.97438 * 23 21 20 25 25 Si 1.86806 * 120.00054 * 179.97438 * 23 21 20 26 26 H 1.48504 * 109.46844 * 89.99790 * 25 23 21 27 27 H 1.48494 * 109.47240 * 210.00030 * 25 23 21 28 28 H 1.48504 * 109.47231 * 330.00029 * 25 23 21 29 29 H 1.08997 * 109.47178 * 305.84717 * 1 2 3 30 30 H 1.09003 * 109.46875 * 65.84768 * 1 2 3 31 31 H 1.08995 * 109.46685 * 185.84830 * 1 2 3 32 32 H 1.08991 * 109.47459 * 202.87097 * 3 2 1 33 33 H 1.09006 * 109.47031 * 322.87917 * 3 2 1 34 34 H 1.09001 * 109.46908 * 82.87100 * 3 2 1 35 35 H 1.09000 * 109.47595 * 307.51564 * 4 2 1 36 36 H 1.08999 * 109.47477 * 67.51627 * 4 2 1 37 37 H 1.09010 * 109.47361 * 187.51366 * 4 2 1 38 38 H 1.09005 * 109.46840 * 146.17061 * 6 5 2 39 39 H 1.08996 * 109.47161 * 26.17211 * 6 5 2 40 40 H 1.08006 * 120.00052 * 359.97438 * 8 7 6 41 41 H 1.08003 * 120.00319 * 180.02562 * 9 8 7 42 42 H 1.08005 * 119.99691 * 180.02562 * 10 9 8 43 43 H 1.07999 * 119.99964 * 179.72968 * 11 10 9 44 44 H 1.08000 * 120.00237 * 359.97438 * 12 7 6 45 45 H 1.08992 * 109.47103 * 306.58059 * 15 13 5 46 46 H 1.08997 * 109.46730 * 66.57963 * 15 13 5 47 47 H 1.09001 * 109.47222 * 300.00513 * 19 17 16 48 48 H 1.09001 * 109.46895 * 60.00392 * 19 17 16 49 49 H 0.96996 * 120.00319 * 179.97438 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 6 2.0400 -0.7212 -1.2492 5 7 2.0184 -0.6906 1.1962 6 6 1.0791 -1.4047 2.0644 7 6 0.6345 -0.4941 3.1799 8 6 -0.5571 0.1983 3.0736 9 6 -0.9651 1.0331 4.0971 10 6 -0.1817 1.1751 5.2271 11 6 1.0125 0.4868 5.3312 12 6 1.4183 -0.3516 4.3097 13 6 3.3318 -0.6690 1.4977 14 8 3.7510 -1.3232 2.4290 15 6 4.2795 0.1680 0.6777 16 8 5.6445 -0.0956 1.0969 17 6 6.6176 0.5754 0.4609 18 8 6.3381 1.3575 -0.4168 19 6 8.0588 0.3534 0.8414 20 16 9.1222 1.3942 -0.1893 21 6 10.7016 0.9457 0.4500 22 1 10.7756 0.2198 1.2463 23 6 11.8507 1.5252 -0.0698 24 7 11.7607 2.4095 -1.0406 25 14 13.5252 1.0502 0.6085 26 1 14.0600 -0.1044 -0.1572 27 1 14.4550 2.2012 0.4825 28 1 13.3918 0.6760 2.0394 29 1 -0.3633 0.6018 0.8330 30 1 -0.3633 0.4205 -0.9377 31 1 -0.3632 -1.0223 0.1047 32 1 3.0538 1.4695 -0.3994 33 1 1.3886 2.0583 -0.6202 34 1 2.0409 1.8276 1.0197 35 1 1.5711 -1.7027 -1.3191 36 1 1.7906 -0.1356 -2.1341 37 1 3.1218 -0.8390 -1.1847 38 1 1.5691 -2.2826 2.4855 39 1 0.2118 -1.7166 1.4826 40 1 -1.1695 0.0870 2.1909 41 1 -1.8964 1.5738 4.0142 42 1 -0.5007 1.8271 6.0269 43 1 1.6267 0.6011 6.2121 44 1 2.3490 -0.8931 4.3931 45 1 4.1680 -0.0846 -0.3766 46 1 4.0518 1.2237 0.8245 47 1 8.2018 0.6133 1.8902 48 1 8.3178 -0.6942 0.6880 49 1 12.5637 2.8148 -1.4035 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000032810045.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:48:41 Heat of formation + Delta-G solvation = -71.336743 kcal Electronic energy + Delta-G solvation = -30732.906856 eV Core-core repulsion = 26559.600038 eV Total energy + Delta-G solvation = -4173.306818 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 365.149 amu Computer time = 2.11 seconds Orbital eigenvalues (eV) -41.19976 -39.96166 -39.07578 -37.52867 -36.08687 -33.76998 -32.47938 -31.69906 -31.09387 -30.43528 -29.22816 -27.82030 -26.91548 -26.01761 -25.51774 -22.82696 -22.04057 -21.74259 -20.93407 -19.03721 -17.95390 -17.53994 -17.23241 -16.99159 -16.77180 -16.23161 -15.79684 -15.44991 -15.08033 -15.04390 -14.83721 -14.78027 -14.40712 -14.14823 -13.89916 -13.71078 -13.44499 -13.21001 -13.03958 -12.89874 -12.75783 -12.68216 -12.62893 -12.35245 -12.08064 -11.86512 -11.81186 -11.63381 -11.32935 -11.25363 -11.09317 -11.06048 -10.93533 -10.81636 -10.47982 -10.16288 -9.99365 -9.88094 -9.18356 -9.13240 -9.10779 -8.96552 -8.36456 -6.60003 -6.26841 -3.99354 0.97233 1.13619 2.19704 2.33263 2.60838 2.88948 3.21685 3.25860 3.30206 3.51460 3.59641 4.05992 4.15803 4.25841 4.32592 4.46625 4.54663 4.60027 4.72638 4.78272 4.82567 4.90885 4.96673 5.08595 5.09220 5.14970 5.16162 5.20504 5.24047 5.32781 5.37380 5.38152 5.40438 5.49361 5.52364 5.59746 5.71939 5.78869 5.79696 5.80442 5.87128 6.11008 6.16104 6.18111 6.26673 6.33481 6.56990 6.72596 7.01008 7.56672 7.89159 8.10696 8.31483 9.18938 10.80667 Molecular weight = 365.15amu Principal moments of inertia in cm(-1) A = 0.015837 B = 0.001987 C = 0.001864 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1767.559261 B =14088.771132 C =15018.797786 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.164 4.164 2 C 0.158 3.842 3 C -0.185 4.185 4 C -0.172 4.172 5 N -0.600 5.600 6 C 0.150 3.850 7 C -0.106 4.106 8 C -0.113 4.113 9 C -0.126 4.126 10 C -0.117 4.117 11 C -0.122 4.122 12 C -0.097 4.097 13 C 0.524 3.476 14 O -0.511 6.511 15 C 0.031 3.969 16 O -0.340 6.340 17 C 0.481 3.519 18 O -0.489 6.489 19 C -0.127 4.127 20 S -0.058 6.058 21 C -0.535 4.535 22 H 0.077 0.923 23 C 0.074 3.926 24 N -0.868 5.868 25 Si 0.922 3.078 26 H -0.276 1.276 27 H -0.282 1.282 28 H -0.271 1.271 29 H 0.075 0.925 30 H 0.074 0.926 31 H 0.067 0.933 32 H 0.078 0.922 33 H 0.075 0.925 34 H 0.066 0.934 35 H 0.065 0.935 36 H 0.076 0.924 37 H 0.066 0.934 38 H 0.093 0.907 39 H 0.094 0.906 40 H 0.126 0.874 41 H 0.120 0.880 42 H 0.120 0.880 43 H 0.122 0.878 44 H 0.131 0.869 45 H 0.105 0.895 46 H 0.110 0.890 47 H 0.105 0.895 48 H 0.105 0.895 49 H 0.269 0.731 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -30.109 -5.256 5.443 31.045 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.221 4.221 2 C 0.074 3.926 3 C -0.243 4.243 4 C -0.229 4.229 5 N -0.336 5.336 6 C 0.029 3.971 7 C -0.107 4.107 8 C -0.132 4.132 9 C -0.144 4.144 10 C -0.136 4.136 11 C -0.140 4.140 12 C -0.115 4.115 13 C 0.311 3.689 14 O -0.385 6.385 15 C -0.046 4.046 16 O -0.257 6.257 17 C 0.322 3.678 18 O -0.375 6.375 19 C -0.275 4.275 20 S 0.169 5.831 21 C -0.683 4.683 22 H 0.095 0.905 23 C -0.135 4.135 24 N -0.503 5.503 25 Si 0.748 3.252 26 H -0.202 1.202 27 H -0.207 1.207 28 H -0.196 1.196 29 H 0.094 0.906 30 H 0.093 0.907 31 H 0.086 0.914 32 H 0.097 0.903 33 H 0.094 0.906 34 H 0.085 0.915 35 H 0.084 0.916 36 H 0.094 0.906 37 H 0.084 0.916 38 H 0.111 0.889 39 H 0.112 0.888 40 H 0.143 0.857 41 H 0.138 0.862 42 H 0.138 0.862 43 H 0.140 0.860 44 H 0.149 0.851 45 H 0.123 0.877 46 H 0.128 0.872 47 H 0.123 0.877 48 H 0.123 0.877 49 H 0.079 0.921 Dipole moment (debyes) X Y Z Total from point charges -30.153 -4.534 4.722 30.856 hybrid contribution 1.244 -0.924 1.293 2.018 sum -28.909 -5.457 6.015 30.028 Atomic orbital electron populations 1.22457 0.92982 1.02912 1.03748 1.20576 0.95301 0.92211 0.84498 1.22813 1.03228 0.94824 1.03401 1.22489 1.02182 1.01268 0.96987 1.48102 1.05906 1.54081 1.25462 1.20441 0.93345 0.93753 0.89595 1.20208 0.95248 0.99329 0.95934 1.21181 0.96321 0.96877 0.98797 1.21119 0.99913 0.99233 0.94139 1.21196 0.94954 0.99414 0.98006 1.21229 0.96623 0.97006 0.99122 1.21339 0.99486 0.97771 0.92949 1.20094 0.82295 0.81787 0.84706 1.90715 1.76397 1.41728 1.29644 1.23667 0.80326 1.01022 0.99546 1.86585 1.14647 1.63830 1.60654 1.23432 0.87856 0.77334 0.79143 1.90662 1.83556 1.33712 1.29540 1.23305 0.89711 1.07503 1.06985 1.85358 0.98529 1.52863 1.46364 1.22849 0.91161 1.29909 1.24407 0.90527 1.25000 0.99318 0.94464 0.94733 1.70005 1.29784 1.26090 1.24414 0.86119 0.81590 0.78197 0.79336 1.20184 1.20720 1.19555 0.90637 0.90713 0.91404 0.90293 0.90561 0.91461 0.91635 0.90555 0.91570 0.88920 0.88760 0.85662 0.86173 0.86220 0.86027 0.85125 0.87737 0.87222 0.87705 0.87723 0.92085 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -0.77 6.94 37.16 0.26 -0.52 16 2 C 0.16 1.13 1.02 -131.82 -0.13 0.99 16 3 C -0.19 -1.44 7.14 37.16 0.27 -1.17 16 4 C -0.17 -1.19 8.38 37.16 0.31 -0.88 16 5 N -0.60 -5.63 2.39 -160.18 -0.38 -6.02 16 6 C 0.15 1.24 5.00 -5.20 -0.03 1.22 16 7 C -0.11 -0.94 5.41 -104.63 -0.57 -1.51 16 8 C -0.11 -0.83 8.36 -39.59 -0.33 -1.16 16 9 C -0.13 -0.93 10.05 -39.58 -0.40 -1.32 16 10 C -0.12 -0.95 10.05 -39.59 -0.40 -1.34 16 11 C -0.12 -1.14 10.05 -39.58 -0.40 -1.53 16 12 C -0.10 -1.02 9.60 -39.58 -0.38 -1.40 16 13 C 0.52 6.86 7.21 -10.98 -0.08 6.78 16 14 O -0.51 -8.35 14.91 -14.02 -0.21 -8.56 16 15 C 0.03 0.43 3.61 36.01 0.13 0.56 16 16 O -0.34 -5.95 9.76 -45.87 -0.45 -6.40 16 17 C 0.48 9.42 7.98 36.00 0.29 9.70 16 18 O -0.49 -10.41 15.61 -18.76 -0.29 -10.71 16 19 C -0.13 -2.67 6.27 36.00 0.23 -2.44 16 20 S -0.06 -1.53 20.58 -107.50 -2.21 -3.75 16 21 C -0.54 -15.11 9.50 30.94 0.29 -14.82 16 22 H 0.08 2.06 7.80 -52.48 -0.41 1.65 16 23 C 0.07 2.10 5.49 -17.43 -0.10 2.00 16 24 N -0.87 -25.77 13.22 55.49 0.73 -25.04 16 25 Si 0.92 21.31 29.55 -169.99 -5.02 16.29 16 26 H -0.28 -6.26 7.11 56.52 0.40 -5.86 16 27 H -0.28 -6.40 7.11 56.52 0.40 -6.00 16 28 H -0.27 -6.11 7.11 56.52 0.40 -5.71 16 29 H 0.07 0.37 4.80 -51.93 -0.25 0.12 16 30 H 0.07 0.27 8.14 -51.93 -0.42 -0.15 16 31 H 0.07 0.27 6.19 -51.93 -0.32 -0.06 16 32 H 0.08 0.72 4.80 -51.93 -0.25 0.47 16 33 H 0.08 0.46 7.94 -51.93 -0.41 0.05 16 34 H 0.07 0.59 7.94 -51.93 -0.41 0.18 16 35 H 0.06 0.41 8.13 -51.93 -0.42 -0.01 16 36 H 0.08 0.44 8.13 -51.93 -0.42 0.01 16 37 H 0.07 0.57 5.03 -51.92 -0.26 0.31 16 38 H 0.09 0.89 7.45 -51.93 -0.39 0.50 16 39 H 0.09 0.53 5.46 -51.93 -0.28 0.25 16 40 H 0.13 0.64 5.90 -52.48 -0.31 0.33 16 41 H 0.12 0.63 8.06 -52.48 -0.42 0.21 16 42 H 0.12 0.73 8.06 -52.48 -0.42 0.31 16 43 H 0.12 0.98 8.06 -52.49 -0.42 0.56 16 44 H 0.13 1.57 6.95 -52.49 -0.36 1.21 16 45 H 0.11 1.28 4.50 -51.93 -0.23 1.05 16 46 H 0.11 1.40 5.66 -51.93 -0.29 1.11 16 47 H 0.10 2.07 8.14 -51.92 -0.42 1.65 16 48 H 0.10 2.05 8.14 -51.91 -0.42 1.63 16 49 H 0.27 7.43 8.31 -40.82 -0.34 7.09 16 LS Contribution 403.01 15.07 6.07 6.07 Total: -1.00 -34.57 403.01 -9.50 -44.07 By element: Atomic # 1 Polarization: 7.58 SS G_CDS: -6.70 Total: 0.88 kcal Atomic # 6 Polarization: -5.81 SS G_CDS: -1.03 Total: -6.84 kcal Atomic # 7 Polarization: -31.40 SS G_CDS: 0.35 Total: -31.05 kcal Atomic # 8 Polarization: -24.71 SS G_CDS: -0.95 Total: -25.66 kcal Atomic # 14 Polarization: 21.31 SS G_CDS: -5.02 Total: 16.29 kcal Atomic # 16 Polarization: -1.53 SS G_CDS: -2.21 Total: -3.75 kcal Total LS contribution 6.07 Total: 6.07 kcal Total: -34.57 -9.50 -44.07 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000032810045.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -27.271 kcal (2) G-P(sol) polarization free energy of solvation -34.565 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -61.837 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.500 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.066 kcal (6) G-S(sol) free energy of system = (1) + (5) -71.337 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 2.11 seconds