Wall clock time and date at job start Tue Mar 31 2020 06:48:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 C 1.53005 * 109.47170 * 2 1 4 4 C 1.52995 * 109.47053 * 240.00321 * 2 1 3 5 5 N 1.46499 * 109.47036 * 120.00071 * 2 1 3 6 6 C 1.46494 * 119.99969 * 8.34920 * 5 2 1 7 7 C 1.50700 * 109.47211 * 266.16920 * 6 5 2 8 8 C 1.38230 * 120.00071 * 96.77775 * 7 6 5 9 9 C 1.38232 * 120.00209 * 179.97438 * 8 7 6 10 10 C 1.38237 * 119.99890 * 359.97438 * 9 8 7 11 11 C 1.38227 * 119.99961 * 0.27580 * 10 9 8 12 12 C 1.38237 * 119.99855 * 276.75753 * 7 6 5 13 13 C 1.34780 * 119.99715 * 188.35078 * 5 2 1 14 14 O 1.21284 * 119.99887 * 185.59614 * 13 5 2 15 15 C 1.50702 * 120.00076 * 5.58647 * 13 5 2 16 16 O 1.45197 * 109.46935 * 186.57453 * 15 13 5 17 17 C 1.34227 * 117.00297 * 180.02562 * 16 15 13 18 18 O 1.20837 * 119.99683 * 0.02562 * 17 16 15 19 19 C 1.50693 * 120.00637 * 180.02562 * 17 16 15 20 20 S 1.81005 * 109.47454 * 179.97438 * 19 17 16 21 21 C 1.76195 * 100.00124 * 180.02562 * 20 19 17 22 22 H 1.08006 * 119.99932 * 0.02562 * 21 20 19 23 23 C 1.38797 * 120.00067 * 180.02562 * 21 20 19 24 24 N 1.31626 * 120.00292 * 359.97438 * 23 21 20 25 25 Si 1.86806 * 120.00054 * 179.97438 * 23 21 20 26 26 H 1.48504 * 109.46844 * 89.99790 * 25 23 21 27 27 H 1.48494 * 109.47240 * 210.00030 * 25 23 21 28 28 H 1.48504 * 109.47231 * 330.00029 * 25 23 21 29 29 H 1.08997 * 109.47178 * 305.84717 * 1 2 3 30 30 H 1.09003 * 109.46875 * 65.84768 * 1 2 3 31 31 H 1.08995 * 109.46685 * 185.84830 * 1 2 3 32 32 H 1.08991 * 109.47459 * 202.87097 * 3 2 1 33 33 H 1.09006 * 109.47031 * 322.87917 * 3 2 1 34 34 H 1.09001 * 109.46908 * 82.87100 * 3 2 1 35 35 H 1.09000 * 109.47595 * 307.51564 * 4 2 1 36 36 H 1.08999 * 109.47477 * 67.51627 * 4 2 1 37 37 H 1.09010 * 109.47361 * 187.51366 * 4 2 1 38 38 H 1.09005 * 109.46840 * 146.17061 * 6 5 2 39 39 H 1.08996 * 109.47161 * 26.17211 * 6 5 2 40 40 H 1.08006 * 120.00052 * 359.97438 * 8 7 6 41 41 H 1.08003 * 120.00319 * 180.02562 * 9 8 7 42 42 H 1.08005 * 119.99691 * 180.02562 * 10 9 8 43 43 H 1.07999 * 119.99964 * 179.72968 * 11 10 9 44 44 H 1.08000 * 120.00237 * 359.97438 * 12 7 6 45 45 H 1.08992 * 109.47103 * 306.58059 * 15 13 5 46 46 H 1.08997 * 109.46730 * 66.57963 * 15 13 5 47 47 H 1.09001 * 109.47222 * 300.00513 * 19 17 16 48 48 H 1.09001 * 109.46895 * 60.00392 * 19 17 16 49 49 H 0.96996 * 120.00319 * 179.97438 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 6 2.0400 -0.7212 -1.2492 5 7 2.0184 -0.6906 1.1962 6 6 1.0791 -1.4047 2.0644 7 6 0.6345 -0.4941 3.1799 8 6 -0.5571 0.1983 3.0736 9 6 -0.9651 1.0331 4.0971 10 6 -0.1817 1.1751 5.2271 11 6 1.0125 0.4868 5.3312 12 6 1.4183 -0.3516 4.3097 13 6 3.3318 -0.6690 1.4977 14 8 3.7510 -1.3232 2.4290 15 6 4.2795 0.1680 0.6777 16 8 5.6445 -0.0956 1.0969 17 6 6.6176 0.5754 0.4609 18 8 6.3381 1.3575 -0.4168 19 6 8.0588 0.3534 0.8414 20 16 9.1222 1.3942 -0.1893 21 6 10.7016 0.9457 0.4500 22 1 10.7756 0.2198 1.2463 23 6 11.8507 1.5252 -0.0698 24 7 11.7607 2.4095 -1.0406 25 14 13.5252 1.0502 0.6085 26 1 14.0600 -0.1044 -0.1572 27 1 14.4550 2.2012 0.4825 28 1 13.3918 0.6760 2.0394 29 1 -0.3633 0.6018 0.8330 30 1 -0.3633 0.4205 -0.9377 31 1 -0.3632 -1.0223 0.1047 32 1 3.0538 1.4695 -0.3994 33 1 1.3886 2.0583 -0.6202 34 1 2.0409 1.8276 1.0197 35 1 1.5711 -1.7027 -1.3191 36 1 1.7906 -0.1356 -2.1341 37 1 3.1218 -0.8390 -1.1847 38 1 1.5691 -2.2826 2.4855 39 1 0.2118 -1.7166 1.4826 40 1 -1.1695 0.0870 2.1909 41 1 -1.8964 1.5738 4.0142 42 1 -0.5007 1.8271 6.0269 43 1 1.6267 0.6011 6.2121 44 1 2.3490 -0.8931 4.3931 45 1 4.1680 -0.0846 -0.3766 46 1 4.0518 1.2237 0.8245 47 1 8.2018 0.6133 1.8902 48 1 8.3178 -0.6942 0.6880 49 1 12.5637 2.8148 -1.4035 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000032810045.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:48:39 Heat of formation + Delta-G solvation = -89.515058 kcal Electronic energy + Delta-G solvation = -30733.695127 eV Core-core repulsion = 26559.600038 eV Total energy + Delta-G solvation = -4174.095089 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 365.149 amu Computer time = 1.14 seconds Orbital eigenvalues (eV) -42.18490 -41.27248 -39.83596 -38.40957 -37.55708 -34.62365 -34.47464 -32.49483 -31.82147 -31.67651 -30.35926 -28.38540 -27.83340 -27.55045 -26.72168 -23.46069 -23.06622 -22.39752 -22.24882 -20.14549 -19.63235 -18.94968 -18.12598 -17.98609 -17.89020 -17.32094 -16.90971 -16.77468 -16.44203 -16.01929 -15.93629 -15.81213 -15.59252 -15.31136 -14.76111 -14.59007 -14.57141 -14.24066 -14.02649 -13.97469 -13.69671 -13.59861 -13.51540 -13.21791 -13.18409 -12.90934 -12.83581 -12.70618 -12.68461 -12.43361 -12.30319 -11.94370 -11.88799 -11.82066 -11.75380 -11.68204 -11.50770 -11.16988 -11.08899 -10.41851 -9.90452 -9.82048 -9.67091 -8.74725 -8.38761 -6.18261 0.30827 0.48693 0.83869 1.01206 1.30921 1.37238 1.42358 1.51495 1.61697 2.11634 2.22672 2.90981 2.96197 3.13158 3.26312 3.61015 3.73212 3.76254 3.79137 3.88114 3.91824 3.98482 4.05596 4.12489 4.14634 4.24426 4.28728 4.40589 4.53499 4.58455 4.62695 4.65304 4.72818 4.76978 4.79273 4.89852 4.98064 5.06801 5.07621 5.14802 5.18143 5.23864 5.30838 5.40373 5.51340 5.55533 5.62183 5.66292 6.10292 6.15923 6.17170 6.55442 6.93114 7.03132 8.70416 Molecular weight = 365.15amu Principal moments of inertia in cm(-1) A = 0.015837 B = 0.001987 C = 0.001864 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1767.559261 B =14088.771132 C =15018.797786 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.161 4.161 2 C 0.153 3.847 3 C -0.185 4.185 4 C -0.171 4.171 5 N -0.586 5.586 6 C 0.149 3.851 7 C -0.113 4.113 8 C -0.108 4.108 9 C -0.126 4.126 10 C -0.123 4.123 11 C -0.139 4.139 12 C -0.123 4.123 13 C 0.522 3.478 14 O -0.553 6.553 15 C 0.026 3.974 16 O -0.345 6.345 17 C 0.491 3.509 18 O -0.509 6.509 19 C -0.110 4.110 20 S -0.124 6.124 21 C -0.551 4.551 22 H 0.084 0.916 23 C 0.018 3.982 24 N -0.908 5.908 25 Si 0.999 3.001 26 H -0.267 1.267 27 H -0.275 1.275 28 H -0.261 1.261 29 H 0.077 0.923 30 H 0.094 0.906 31 H 0.081 0.919 32 H 0.061 0.939 33 H 0.098 0.902 34 H 0.054 0.946 35 H 0.075 0.925 36 H 0.093 0.907 37 H 0.043 0.957 38 H 0.073 0.927 39 H 0.130 0.870 40 H 0.156 0.844 41 H 0.149 0.851 42 H 0.139 0.861 43 H 0.122 0.878 44 H 0.102 0.898 45 H 0.121 0.879 46 H 0.118 0.882 47 H 0.118 0.882 48 H 0.120 0.880 49 H 0.273 0.727 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -32.539 -5.529 5.286 33.426 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.217 4.217 2 C 0.070 3.930 3 C -0.242 4.242 4 C -0.229 4.229 5 N -0.320 5.320 6 C 0.028 3.972 7 C -0.114 4.114 8 C -0.126 4.126 9 C -0.144 4.144 10 C -0.141 4.141 11 C -0.157 4.157 12 C -0.142 4.142 13 C 0.309 3.691 14 O -0.431 6.431 15 C -0.050 4.050 16 O -0.261 6.261 17 C 0.333 3.667 18 O -0.397 6.397 19 C -0.259 4.259 20 S 0.103 5.897 21 C -0.699 4.699 22 H 0.102 0.898 23 C -0.188 4.188 24 N -0.544 5.544 25 Si 0.820 3.180 26 H -0.192 1.192 27 H -0.200 1.200 28 H -0.185 1.185 29 H 0.096 0.904 30 H 0.113 0.887 31 H 0.100 0.900 32 H 0.080 0.920 33 H 0.117 0.883 34 H 0.073 0.927 35 H 0.094 0.906 36 H 0.111 0.889 37 H 0.062 0.938 38 H 0.092 0.908 39 H 0.148 0.852 40 H 0.173 0.827 41 H 0.166 0.834 42 H 0.156 0.844 43 H 0.141 0.859 44 H 0.120 0.880 45 H 0.138 0.862 46 H 0.136 0.864 47 H 0.136 0.864 48 H 0.138 0.862 49 H 0.082 0.918 Dipole moment (debyes) X Y Z Total from point charges -32.641 -4.809 4.554 33.306 hybrid contribution 1.804 -0.836 1.349 2.403 sum -30.836 -5.645 5.903 31.900 Atomic orbital electron populations 1.22472 0.90283 1.04034 1.04952 1.20856 0.97346 0.91442 0.83386 1.22797 1.02834 0.95691 1.02926 1.22495 1.00690 1.02197 0.97480 1.48179 1.04639 1.53196 1.25944 1.20601 0.93834 0.92910 0.89854 1.20267 0.95893 0.99874 0.95407 1.21487 0.95542 0.95765 0.99772 1.21517 1.00601 0.98816 0.93463 1.21480 0.94324 0.99209 0.99082 1.21363 0.97692 0.97531 0.99121 1.21282 0.99277 0.98935 0.94673 1.20062 0.83520 0.81410 0.84062 1.90702 1.77401 1.43620 1.31351 1.24075 0.78289 1.01883 1.00704 1.86533 1.16139 1.63168 1.60279 1.23015 0.87830 0.77073 0.78781 1.90650 1.83872 1.34694 1.30497 1.23101 0.89666 1.06874 1.06225 1.85392 1.00300 1.55258 1.48800 1.23193 0.91718 1.30224 1.24722 0.89838 1.26089 1.03696 0.94139 0.94841 1.70144 1.31141 1.27287 1.25808 0.84950 0.75944 0.78114 0.78967 1.19201 1.20045 1.18475 0.90440 0.88739 0.90047 0.92033 0.88293 0.92715 0.90595 0.88865 0.93811 0.90837 0.85226 0.82701 0.83374 0.84351 0.85947 0.87953 0.86178 0.86435 0.86355 0.86168 0.91762 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -0.86 6.94 71.98 0.50 -0.36 16 2 C 0.15 1.85 1.02 3.61 0.00 1.85 16 3 C -0.18 -2.59 7.14 71.98 0.51 -2.08 16 4 C -0.17 -2.03 8.38 71.98 0.60 -1.43 16 5 N -0.59 -10.55 2.39 -779.08 -1.86 -12.41 16 6 C 0.15 2.31 5.00 85.63 0.43 2.74 16 7 C -0.11 -1.92 5.41 -19.87 -0.11 -2.03 16 8 C -0.11 -1.27 8.36 22.27 0.19 -1.08 16 9 C -0.13 -1.49 10.05 22.27 0.22 -1.27 16 10 C -0.12 -1.80 10.05 22.27 0.22 -1.58 16 11 C -0.14 -2.67 10.05 22.27 0.22 -2.45 16 12 C -0.12 -2.72 9.60 22.27 0.21 -2.51 16 13 C 0.52 14.02 7.21 87.66 0.63 14.66 16 14 O -0.55 -19.08 14.91 15.67 0.23 -18.85 16 15 C 0.03 0.74 3.61 71.24 0.26 0.99 16 16 O -0.34 -12.29 9.76 -45.06 -0.44 -12.73 16 17 C 0.49 19.52 7.98 71.23 0.57 20.08 16 18 O -0.51 -22.14 15.61 21.93 0.34 -21.80 16 19 C -0.11 -4.67 6.27 71.23 0.45 -4.22 16 20 S -0.12 -6.80 20.58 -56.49 -1.16 -7.96 16 21 C -0.55 -31.38 9.50 67.95 0.65 -30.73 16 22 H 0.08 4.48 7.80 -2.91 -0.02 4.45 16 23 C 0.02 1.00 5.49 84.86 0.47 1.46 16 24 N -0.91 -54.72 13.22 21.65 0.29 -54.43 16 25 Si 1.00 43.54 29.55 68.60 2.03 45.56 16 26 H -0.27 -11.17 7.11 99.48 0.71 -10.46 16 27 H -0.28 -11.62 7.11 99.48 0.71 -10.91 16 28 H -0.26 -10.83 7.11 99.48 0.71 -10.12 16 29 H 0.08 0.42 4.80 -2.39 -0.01 0.41 16 30 H 0.09 0.22 8.14 -2.39 -0.02 0.20 16 31 H 0.08 0.25 6.19 -2.39 -0.01 0.23 16 32 H 0.06 1.08 4.80 -2.39 -0.01 1.07 16 33 H 0.10 0.93 7.94 -2.38 -0.02 0.91 16 34 H 0.05 0.91 7.94 -2.39 -0.02 0.89 16 35 H 0.08 0.75 8.13 -2.39 -0.02 0.74 16 36 H 0.09 0.81 8.13 -2.39 -0.02 0.79 16 37 H 0.04 0.73 5.03 -2.38 -0.01 0.71 16 38 H 0.07 1.45 7.45 -2.38 -0.02 1.43 16 39 H 0.13 1.05 5.46 -2.39 -0.01 1.04 16 40 H 0.16 0.86 5.90 -2.91 -0.02 0.84 16 41 H 0.15 0.92 8.06 -2.91 -0.02 0.90 16 42 H 0.14 1.43 8.06 -2.91 -0.02 1.41 16 43 H 0.12 2.15 8.06 -2.91 -0.02 2.13 16 44 H 0.10 2.79 6.95 -2.91 -0.02 2.77 16 45 H 0.12 2.98 4.50 -2.39 -0.01 2.97 16 46 H 0.12 3.08 5.66 -2.39 -0.01 3.07 16 47 H 0.12 4.68 8.14 -2.39 -0.02 4.66 16 48 H 0.12 4.70 8.14 -2.40 -0.02 4.68 16 49 H 0.27 15.25 8.31 -92.71 -0.77 14.48 16 Total: -1.00 -77.71 403.01 6.43 -71.28 By element: Atomic # 1 Polarization: 18.31 SS G_CDS: 0.98 Total: 19.29 kcal Atomic # 6 Polarization: -13.98 SS G_CDS: 6.03 Total: -7.95 kcal Atomic # 7 Polarization: -65.27 SS G_CDS: -1.58 Total: -66.85 kcal Atomic # 8 Polarization: -53.51 SS G_CDS: 0.14 Total: -53.38 kcal Atomic # 14 Polarization: 43.54 SS G_CDS: 2.03 Total: 45.56 kcal Atomic # 16 Polarization: -6.80 SS G_CDS: -1.16 Total: -7.96 kcal Total: -77.71 6.43 -71.28 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000032810045.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -18.235 kcal (2) G-P(sol) polarization free energy of solvation -77.713 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -95.948 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.433 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.280 kcal (6) G-S(sol) free energy of system = (1) + (5) -89.515 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.14 seconds