Wall clock time and date at job start Tue Mar 31 2020 05:28:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50697 * 1 3 3 C 1.38137 * 119.97136 * 2 1 4 4 C 1.38844 * 119.94155 * 180.27562 * 3 2 1 5 5 N 1.39962 * 120.05855 * 179.74472 * 4 3 2 6 6 C 1.46505 * 120.00096 * 112.07097 * 5 4 3 7 7 C 1.50703 * 109.46966 * 270.00316 * 6 5 4 8 8 H 1.07995 * 119.99751 * 359.97438 * 7 6 5 9 9 C 1.37873 * 119.99776 * 180.02562 * 7 6 5 10 10 N 1.31510 * 120.00504 * 359.97438 * 9 7 6 11 11 Si 1.86806 * 119.99628 * 179.97438 * 9 7 6 12 12 H 1.48501 * 109.47349 * 59.99685 * 11 9 7 13 13 H 1.48502 * 109.47070 * 179.97438 * 11 9 7 14 14 H 1.48496 * 109.47288 * 299.99544 * 11 9 7 15 15 C 1.34779 * 120.00251 * 292.06967 * 5 4 3 16 16 O 1.21285 * 119.99471 * 4.96590 * 15 5 4 17 17 C 1.50702 * 120.00004 * 184.97133 * 15 5 4 18 18 N 1.46904 * 109.46850 * 173.47505 * 17 15 5 19 19 C 1.46844 * 111.00046 * 169.00278 * 18 17 15 20 20 C 1.53039 * 109.52412 * 185.83659 * 19 18 17 21 21 C 1.53123 * 109.27326 * 300.81542 * 20 19 18 22 22 C 1.53112 * 109.16223 * 57.65966 * 21 20 19 23 23 H 1.09000 * 109.53838 * 62.29590 * 22 21 20 24 24 C 1.52999 * 109.50648 * 182.40157 * 22 21 20 25 25 C 1.46854 * 110.99474 * 293.20610 * 18 17 15 26 26 C 1.38890 * 119.88296 * 359.46609 * 4 3 2 27 27 C 1.38087 * 119.94375 * 0.25706 * 26 4 3 28 28 C 1.38360 * 119.97166 * 179.71997 * 2 1 3 29 29 Cl 1.73598 * 119.94172 * 359.97438 * 28 2 1 30 30 H 1.09000 * 109.47197 * 270.28262 * 1 2 3 31 31 H 1.09002 * 109.46757 * 30.28070 * 1 2 3 32 32 H 1.08997 * 109.47218 * 150.27472 * 1 2 3 33 33 H 1.07996 * 120.02759 * 359.97438 * 3 2 1 34 34 H 1.09000 * 109.46924 * 29.99850 * 6 5 4 35 35 H 1.08996 * 109.47527 * 149.99928 * 6 5 4 36 36 H 0.96998 * 120.00782 * 180.02562 * 10 9 7 37 37 H 1.08999 * 109.46784 * 293.46306 * 17 15 5 38 38 H 1.08990 * 109.47675 * 53.46816 * 17 15 5 39 39 H 1.09001 * 109.45863 * 305.84907 * 19 18 17 40 40 H 1.08999 * 109.46462 * 65.81344 * 19 18 17 41 41 H 1.08993 * 109.50074 * 180.87739 * 20 19 18 42 42 H 1.08998 * 109.53335 * 60.77419 * 20 19 18 43 43 H 1.08993 * 109.52280 * 297.74501 * 21 20 19 44 44 H 1.09001 * 109.57096 * 177.58916 * 21 20 19 45 45 H 1.08994 * 109.47172 * 179.79766 * 24 22 21 46 46 H 1.08993 * 109.47022 * 299.80173 * 24 22 21 47 47 H 1.09001 * 109.46969 * 59.79638 * 24 22 21 48 48 H 1.09002 * 109.46317 * 294.17671 * 25 18 17 49 49 H 1.08999 * 109.45996 * 54.15013 * 25 18 17 50 50 H 1.08002 * 120.03056 * 180.23230 * 26 4 3 51 51 H 1.07999 * 119.97149 * 180.02562 * 27 26 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1971 1.1966 0.0000 4 6 3.5855 1.1959 -0.0058 5 7 4.2871 2.4070 -0.0112 6 6 5.0718 2.8042 1.1605 7 6 4.2037 3.6016 2.0996 8 1 3.1710 3.7935 1.8484 9 6 4.7282 4.0868 3.2787 10 7 5.9859 3.8534 3.5842 11 14 3.6523 5.0757 4.4423 12 1 2.5000 4.2460 4.8768 13 1 4.4476 5.4783 5.6301 14 1 3.1541 6.2887 3.7455 15 6 4.2410 3.2077 -1.0943 16 8 3.5211 2.9237 -2.0281 17 6 5.0841 4.4558 -1.1451 18 7 4.9765 5.0655 -2.4773 19 6 5.5669 6.4100 -2.4900 20 6 5.3086 7.0692 -3.8468 21 6 5.9273 6.2093 -4.9525 22 6 5.3310 4.8006 -4.8867 23 1 4.2572 4.8505 -5.0674 24 6 5.9874 3.9178 -5.9500 25 6 5.5886 4.2072 -3.4997 26 6 4.2769 -0.0086 -0.0003 27 6 3.5823 -1.2021 0.0054 28 6 2.1982 -1.1986 0.0059 29 17 1.3279 -2.7006 0.0139 30 1 -0.3633 0.0051 1.0276 31 1 -0.3633 0.8875 -0.5182 32 1 -0.3633 -0.8924 -0.5095 33 1 1.6571 2.1319 -0.0004 34 1 5.4376 1.9137 1.6717 35 1 5.9176 3.4134 0.8419 36 1 6.3548 4.1945 4.4140 37 1 4.7330 5.1623 -0.3930 38 1 6.1246 4.1999 -0.9456 39 1 5.1153 7.0123 -1.7018 40 1 6.6411 6.3366 -2.3205 41 1 5.7604 8.0610 -3.8613 42 1 4.2346 7.1559 -4.0113 43 1 7.0066 6.1550 -4.8107 44 1 5.7094 6.6520 -5.9244 45 1 5.5651 2.9142 -5.9003 46 1 5.8037 4.3409 -6.9375 47 1 7.0613 3.8694 -5.7696 48 1 6.6627 4.1441 -3.3255 49 1 5.1527 3.2096 -3.4448 50 1 5.3569 -0.0120 -0.0010 51 1 4.1194 -2.1390 0.0101 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000032855962.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:28:12 Heat of formation + Delta-G solvation = -36.851851 kcal Electronic energy + Delta-G solvation = -31375.345825 eV Core-core repulsion = 27299.209340 eV Total energy + Delta-G solvation = -4076.136486 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 364.166 amu Computer time = 1.28 seconds Orbital eigenvalues (eV) -41.65297 -40.32888 -39.31133 -37.53110 -36.66416 -35.22314 -34.66738 -33.62016 -32.85155 -31.35908 -29.19862 -28.45708 -27.88257 -27.46952 -25.00929 -24.64830 -23.60716 -22.72697 -22.27320 -20.58703 -20.11120 -18.67907 -18.30261 -17.81285 -17.44614 -17.03234 -16.58199 -16.45648 -16.34023 -15.52327 -15.36835 -15.25645 -15.09677 -14.98852 -14.83740 -14.37206 -14.22811 -13.96385 -13.83873 -13.56575 -13.45982 -13.43662 -13.33792 -13.29113 -13.11236 -12.80236 -12.76430 -12.68239 -12.53383 -12.40703 -12.34948 -12.10847 -11.92897 -11.84423 -11.67132 -11.55437 -11.29491 -11.22706 -10.75603 -10.59841 -10.07965 -9.82007 -9.28333 -9.23728 -8.24062 -6.38382 0.06599 0.27061 1.11341 1.40786 1.41900 1.48867 1.63834 2.02105 2.38438 2.55462 2.94505 3.06998 3.68338 3.76638 3.78510 3.81948 3.92641 4.03093 4.17505 4.18548 4.24994 4.26867 4.38730 4.40116 4.51008 4.53551 4.63545 4.64868 4.70983 4.73027 4.75640 4.82217 4.85997 4.88066 4.94352 4.99511 5.03002 5.09607 5.12624 5.15228 5.24595 5.27638 5.29121 5.38177 5.43064 5.53389 5.56088 5.66400 5.88958 5.99062 6.06930 6.17666 6.42215 6.72301 7.24616 7.35543 8.81423 Molecular weight = 364.17amu Principal moments of inertia in cm(-1) A = 0.006342 B = 0.003854 C = 0.002639 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 4413.622394 B = 7262.884888 C =10608.362965 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.113 4.113 2 C -0.070 4.070 3 C -0.112 4.112 4 C 0.153 3.847 5 N -0.566 5.566 6 C 0.256 3.744 7 C -0.548 4.548 8 H 0.050 0.950 9 C 0.029 3.971 10 N -0.916 5.916 11 Si 0.952 3.048 12 H -0.276 1.276 13 H -0.279 1.279 14 H -0.269 1.269 15 C 0.522 3.478 16 O -0.557 6.557 17 C 0.055 3.945 18 N -0.535 5.535 19 C 0.052 3.948 20 C -0.111 4.111 21 C -0.110 4.110 22 C -0.084 4.084 23 H 0.061 0.939 24 C -0.140 4.140 25 C 0.063 3.937 26 C -0.130 4.130 27 C -0.090 4.090 28 C -0.052 4.052 29 Cl -0.056 7.056 30 H 0.084 0.916 31 H 0.072 0.928 32 H 0.085 0.915 33 H 0.113 0.887 34 H 0.022 0.978 35 H 0.039 0.961 36 H 0.269 0.731 37 H 0.105 0.895 38 H 0.064 0.936 39 H 0.074 0.926 40 H 0.038 0.962 41 H 0.089 0.911 42 H 0.062 0.938 43 H 0.065 0.935 44 H 0.080 0.920 45 H 0.045 0.955 46 H 0.072 0.928 47 H 0.059 0.941 48 H 0.029 0.971 49 H 0.057 0.943 50 H 0.138 0.862 51 H 0.162 0.838 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.329 -2.421 -12.408 12.711 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.170 4.170 2 C -0.072 4.072 3 C -0.132 4.132 4 C 0.062 3.938 5 N -0.295 5.295 6 C 0.137 3.863 7 C -0.586 4.586 8 H 0.068 0.932 9 C -0.172 4.172 10 N -0.555 5.555 11 Si 0.777 3.223 12 H -0.201 1.201 13 H -0.204 1.204 14 H -0.194 1.194 15 C 0.312 3.688 16 O -0.435 6.435 17 C -0.076 4.076 18 N -0.260 5.260 19 C -0.075 4.075 20 C -0.148 4.148 21 C -0.148 4.148 22 C -0.103 4.103 23 H 0.080 0.920 24 C -0.198 4.198 25 C -0.065 4.065 26 C -0.150 4.150 27 C -0.109 4.109 28 C -0.079 4.079 29 Cl -0.027 7.027 30 H 0.103 0.897 31 H 0.091 0.909 32 H 0.104 0.896 33 H 0.131 0.869 34 H 0.041 0.959 35 H 0.057 0.943 36 H 0.078 0.922 37 H 0.123 0.877 38 H 0.081 0.919 39 H 0.093 0.907 40 H 0.056 0.944 41 H 0.107 0.893 42 H 0.080 0.920 43 H 0.083 0.917 44 H 0.099 0.901 45 H 0.065 0.935 46 H 0.091 0.909 47 H 0.078 0.922 48 H 0.047 0.953 49 H 0.075 0.925 50 H 0.156 0.844 51 H 0.180 0.820 Dipole moment (debyes) X Y Z Total from point charges -2.104 -2.578 -12.863 13.286 hybrid contribution 0.443 0.311 1.510 1.604 sum -1.661 -2.267 -11.352 11.695 Atomic orbital electron populations 1.20887 0.88448 1.04000 1.03629 1.19839 0.98041 0.90439 0.98867 1.21068 0.93270 0.97755 1.01066 1.17960 0.91143 0.86287 0.98394 1.45926 1.48854 1.17978 1.16703 1.19219 0.90479 0.95399 0.81236 1.21543 0.97500 1.34655 1.04916 0.93193 1.25547 0.96082 0.96774 0.98825 1.69975 1.14083 1.46096 1.25314 0.85696 0.78844 0.79251 0.78479 1.20136 1.20411 1.19438 1.20822 0.82556 0.84482 0.80983 1.90602 1.41541 1.73825 1.37575 1.21786 0.98233 0.94558 0.92991 1.61572 1.58319 1.03385 1.02699 1.22223 0.97134 0.88488 0.99682 1.21567 1.01578 0.98903 0.92780 1.21637 0.99864 0.93981 0.99303 1.21106 1.00354 0.95937 0.92930 0.92031 1.21745 1.00552 0.99011 0.98468 1.22183 0.95575 0.96584 0.92142 1.21281 1.00852 0.90848 1.01983 1.21071 0.91874 0.98845 0.99106 1.20801 0.92530 0.86867 1.07662 1.98325 1.76505 1.30947 1.96967 0.89729 0.90888 0.89641 0.86894 0.95944 0.94315 0.92168 0.87730 0.91850 0.90745 0.94422 0.89260 0.91954 0.91668 0.90109 0.93536 0.90870 0.92213 0.95290 0.92492 0.84439 0.82045 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -2.86 9.61 71.24 0.68 -2.17 16 2 C -0.07 -2.26 5.88 -19.86 -0.12 -2.37 16 3 C -0.11 -4.31 9.01 22.39 0.20 -4.10 16 4 C 0.15 6.19 4.83 38.14 0.18 6.38 16 5 N -0.57 -24.36 2.51 -635.26 -1.59 -25.95 16 6 C 0.26 12.10 5.00 85.63 0.43 12.52 16 7 C -0.55 -28.26 9.39 25.60 0.24 -28.02 16 8 H 0.05 2.65 7.81 -2.91 -0.02 2.63 16 9 C 0.03 1.49 5.46 84.65 0.46 1.95 16 10 N -0.92 -49.27 13.29 21.44 0.28 -48.98 16 11 Si 0.95 41.39 29.54 68.60 2.03 43.42 16 12 H -0.28 -11.98 7.11 99.48 0.71 -11.27 16 13 H -0.28 -11.79 7.11 99.48 0.71 -11.08 16 14 H -0.27 -11.43 7.11 99.48 0.71 -10.72 16 15 C 0.52 22.04 7.08 87.66 0.62 22.66 16 16 O -0.56 -25.43 14.35 -3.05 -0.04 -25.47 16 17 C 0.05 2.04 4.07 85.56 0.35 2.39 16 18 N -0.53 -17.58 4.34 -900.90 -3.91 -21.49 16 19 C 0.05 1.37 5.46 86.33 0.47 1.84 16 20 C -0.11 -2.32 6.09 30.65 0.19 -2.13 16 21 C -0.11 -2.15 5.29 30.67 0.16 -1.99 16 22 C -0.08 -2.06 2.88 -10.74 -0.03 -2.09 16 23 H 0.06 1.72 8.14 -2.39 -0.02 1.70 16 24 C -0.14 -2.80 9.20 71.98 0.66 -2.14 16 25 C 0.06 1.92 4.40 86.33 0.38 2.30 16 26 C -0.13 -4.50 9.68 22.39 0.22 -4.28 16 27 C -0.09 -2.63 9.82 22.27 0.22 -2.41 16 28 C -0.05 -1.53 6.32 22.34 0.14 -1.39 16 29 Cl -0.06 -1.35 27.28 -2.72 -0.07 -1.43 16 30 H 0.08 1.96 8.14 -2.39 -0.02 1.94 16 31 H 0.07 1.79 8.09 -2.39 -0.02 1.77 16 32 H 0.08 1.89 6.90 -2.39 -0.02 1.87 16 33 H 0.11 4.61 8.06 -2.91 -0.02 4.58 16 34 H 0.02 1.13 7.85 -2.39 -0.02 1.11 16 35 H 0.04 1.85 6.26 -2.39 -0.01 1.83 16 36 H 0.27 13.77 8.31 -92.71 -0.77 13.00 16 37 H 0.10 4.09 7.97 -2.39 -0.02 4.07 16 38 H 0.06 2.29 7.20 -2.39 -0.02 2.27 16 39 H 0.07 1.97 8.00 -2.39 -0.02 1.95 16 40 H 0.04 0.95 8.14 -2.39 -0.02 0.93 16 41 H 0.09 1.46 8.14 -2.39 -0.02 1.44 16 42 H 0.06 1.43 8.14 -2.39 -0.02 1.41 16 43 H 0.06 1.20 8.14 -2.39 -0.02 1.18 16 44 H 0.08 1.29 8.14 -2.39 -0.02 1.27 16 45 H 0.05 1.01 8.14 -2.39 -0.02 0.99 16 46 H 0.07 1.19 8.14 -2.39 -0.02 1.17 16 47 H 0.06 1.10 8.14 -2.39 -0.02 1.08 16 48 H 0.03 0.84 8.14 -2.39 -0.02 0.82 16 49 H 0.06 2.06 6.10 -2.39 -0.01 2.05 16 50 H 0.14 4.43 8.06 -2.91 -0.02 4.41 16 51 H 0.16 3.65 8.06 -2.91 -0.02 3.63 16 Total: -1.00 -60.00 420.30 3.06 -56.94 By element: Atomic # 1 Polarization: 25.12 SS G_CDS: 0.90 Total: 26.02 kcal Atomic # 6 Polarization: -8.52 SS G_CDS: 5.46 Total: -3.06 kcal Atomic # 7 Polarization: -91.21 SS G_CDS: -5.22 Total: -96.42 kcal Atomic # 8 Polarization: -25.43 SS G_CDS: -0.04 Total: -25.47 kcal Atomic # 14 Polarization: 41.39 SS G_CDS: 2.03 Total: 43.42 kcal Atomic # 17 Polarization: -1.35 SS G_CDS: -0.07 Total: -1.43 kcal Total: -60.00 3.06 -56.94 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000032855962.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 20.091 kcal (2) G-P(sol) polarization free energy of solvation -60.000 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -39.909 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.057 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -56.943 kcal (6) G-S(sol) free energy of system = (1) + (5) -36.852 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.28 seconds