Wall clock time and date at job start Tue Mar 31 2020 05:28:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50705 * 1 3 3 C 1.38125 * 119.97028 * 2 1 4 4 C 1.38845 * 119.94185 * 180.27572 * 3 2 1 5 5 N 1.39966 * 120.05846 * 179.74773 * 4 3 2 6 6 C 1.46502 * 119.99804 * 112.07576 * 5 4 3 7 7 C 1.50700 * 109.46991 * 269.99952 * 6 5 4 8 8 H 1.07994 * 120.00151 * 359.97438 * 7 6 5 9 9 C 1.37879 * 120.00020 * 180.02562 * 7 6 5 10 10 N 1.31517 * 119.99733 * 359.97438 * 9 7 6 11 11 Si 1.86798 * 120.00300 * 179.97438 * 9 7 6 12 12 H 1.48507 * 109.46953 * 0.02562 * 11 9 7 13 13 H 1.48500 * 109.47376 * 119.99497 * 11 9 7 14 14 H 1.48496 * 109.47336 * 239.99815 * 11 9 7 15 15 C 1.34775 * 120.00178 * 292.07320 * 5 4 3 16 16 O 1.21289 * 119.99578 * 5.05197 * 15 5 4 17 17 C 1.50698 * 119.99951 * 185.04900 * 15 5 4 18 18 N 1.46901 * 109.47098 * 186.54025 * 17 15 5 19 19 C 1.46841 * 111.00369 * 190.97802 * 18 17 15 20 20 C 1.53035 * 109.52688 * 174.16127 * 19 18 17 21 21 C 1.53120 * 109.31290 * 59.15603 * 20 19 18 22 22 C 1.53123 * 109.15950 * 302.41089 * 21 20 19 23 23 H 1.09009 * 109.49991 * 297.63321 * 22 21 20 24 24 C 1.53003 * 109.50333 * 177.55470 * 22 21 20 25 25 C 1.46854 * 110.99986 * 66.76292 * 18 17 15 26 26 C 1.38883 * 119.88091 * 359.47019 * 4 3 2 27 27 C 1.38091 * 119.94804 * 0.25642 * 26 4 3 28 28 C 1.38360 * 119.97022 * 179.72614 * 2 1 3 29 29 Cl 1.73612 * 119.94192 * 359.97438 * 28 2 1 30 30 H 1.09003 * 109.47296 * 270.27174 * 1 2 3 31 31 H 1.08996 * 109.47168 * 30.27320 * 1 2 3 32 32 H 1.09002 * 109.47114 * 150.27921 * 1 2 3 33 33 H 1.07998 * 120.03283 * 0.02562 * 3 2 1 34 34 H 1.08997 * 109.47332 * 29.99697 * 6 5 4 35 35 H 1.09003 * 109.47053 * 149.99964 * 6 5 4 36 36 H 0.97008 * 119.99995 * 180.02562 * 10 9 7 37 37 H 1.08999 * 109.47408 * 66.54397 * 17 15 5 38 38 H 1.09001 * 109.47414 * 306.53719 * 17 15 5 39 39 H 1.09002 * 109.46308 * 294.17546 * 19 18 17 40 40 H 1.09003 * 109.46536 * 54.13864 * 19 18 17 41 41 H 1.08999 * 109.50765 * 179.11727 * 20 19 18 42 42 H 1.09004 * 109.50517 * 299.19667 * 20 19 18 43 43 H 1.08999 * 109.56136 * 182.48299 * 21 20 19 44 44 H 1.09002 * 109.49002 * 62.28910 * 21 20 19 45 45 H 1.09000 * 109.47160 * 300.07256 * 24 22 21 46 46 H 1.09005 * 109.46378 * 180.02562 * 24 22 21 47 47 H 1.08998 * 109.47009 * 60.07704 * 24 22 21 48 48 H 1.09000 * 109.46105 * 65.82850 * 25 18 17 49 49 H 1.08993 * 109.45411 * 305.85162 * 25 18 17 50 50 H 1.08004 * 120.02803 * 180.27298 * 26 4 3 51 51 H 1.07996 * 119.97322 * 179.97438 * 27 26 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1971 1.1966 0.0000 4 6 3.5855 1.1959 -0.0058 5 7 4.2871 2.4070 -0.0111 6 6 5.0718 2.8040 1.1606 7 6 4.2038 3.6013 2.0997 8 1 3.1712 3.7934 1.8487 9 6 4.7284 4.0864 3.2789 10 7 5.9861 3.8529 3.5843 11 14 3.6527 5.0753 4.4427 12 1 2.2869 5.1959 3.8724 13 1 3.5809 4.3863 5.7563 14 1 4.2350 6.4291 4.6251 15 6 4.2409 3.2078 -1.0942 16 8 3.5197 2.9247 -2.0273 17 6 5.0853 4.4549 -1.1456 18 7 4.7426 5.2291 -2.3462 19 6 5.7129 6.3080 -2.5714 20 6 5.4101 6.9985 -3.9032 21 6 3.9879 7.5648 -3.8680 22 6 3.0015 6.4288 -3.5830 23 1 3.0463 5.6970 -4.3897 24 6 1.5837 6.9958 -3.4857 25 6 3.3741 5.7548 -2.2605 26 6 4.2768 -0.0086 -0.0004 27 6 3.5823 -1.2021 0.0053 28 6 2.1982 -1.1986 0.0057 29 17 1.3279 -2.7008 0.0136 30 1 -0.3634 0.0049 1.0277 31 1 -0.3633 0.8875 -0.5180 32 1 -0.3633 -0.8925 -0.5095 33 1 1.6571 2.1319 0.0004 34 1 5.4376 1.9135 1.6717 35 1 5.9176 3.4134 0.8419 36 1 6.3551 4.1939 4.4142 37 1 6.1392 4.1791 -1.1799 38 1 4.8963 5.0586 -0.2580 39 1 5.6429 7.0343 -1.7617 40 1 6.7197 5.8912 -2.5991 41 1 6.1208 7.8094 -4.0626 42 1 5.4941 6.2760 -4.7151 43 1 3.7521 8.0190 -4.8304 44 1 3.9150 8.3163 -3.0818 45 1 1.5395 7.7274 -2.6789 46 1 0.8821 6.1867 -3.2823 47 1 1.3194 7.4768 -4.4274 48 1 3.3151 6.4837 -1.4522 49 1 2.6824 4.9361 -2.0626 50 1 5.3569 -0.0119 -0.0005 51 1 4.1194 -2.1390 0.0090 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000032855963.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:28:17 Heat of formation + Delta-G solvation = -25.771420 kcal Electronic energy + Delta-G solvation = -31512.067155 eV Core-core repulsion = 27436.411153 eV Total energy + Delta-G solvation = -4075.656002 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 364.166 amu Computer time = 1.01 seconds Orbital eigenvalues (eV) -40.16581 -39.08567 -37.99165 -36.28296 -35.06821 -34.03367 -32.86296 -32.29080 -31.79590 -29.93518 -27.51557 -26.98114 -26.66486 -26.44823 -23.47696 -23.09016 -22.30971 -21.63109 -20.98885 -19.51329 -18.58595 -16.85289 -16.78079 -16.39007 -15.89406 -15.63306 -15.35121 -15.09026 -14.51998 -14.37807 -14.31469 -13.98375 -13.88745 -13.74350 -13.52351 -12.96272 -12.76595 -12.59296 -12.58351 -12.42864 -12.25053 -12.23403 -12.06489 -11.83327 -11.72307 -11.52363 -11.33034 -11.20803 -11.17227 -11.03851 -10.92858 -10.87887 -10.55193 -10.54771 -10.30269 -10.23760 -10.15158 -9.88055 -9.17131 -8.67738 -8.61572 -8.46896 -7.99922 -7.71183 -6.29384 -4.37019 1.41790 1.59500 2.33491 3.14576 3.20565 3.24298 3.29068 3.52626 3.90637 4.20913 4.27628 4.82371 4.93196 4.96531 4.98133 5.02573 5.04834 5.17943 5.33085 5.46335 5.48869 5.56034 5.57921 5.65439 5.67371 5.70619 5.73800 5.75522 5.82230 5.84185 5.88048 5.88957 5.99741 6.01227 6.05343 6.15564 6.20977 6.22380 6.23094 6.33162 6.41949 6.52738 6.54779 6.68139 6.78018 6.94337 7.04887 7.22535 7.36313 7.55450 7.66711 7.90946 8.09241 8.66742 8.89490 9.31218 10.77486 Molecular weight = 364.17amu Principal moments of inertia in cm(-1) A = 0.006848 B = 0.003691 C = 0.002812 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 4087.859430 B = 7583.314157 C = 9953.689134 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.115 4.115 2 C -0.070 4.070 3 C -0.092 4.092 4 C 0.189 3.811 5 N -0.567 5.567 6 C 0.239 3.761 7 C -0.539 4.539 8 H 0.062 0.938 9 C 0.068 3.932 10 N -0.889 5.889 11 Si 0.895 3.105 12 H -0.272 1.272 13 H -0.281 1.281 14 H -0.282 1.282 15 C 0.525 3.475 16 O -0.537 6.537 17 C 0.042 3.958 18 N -0.523 5.523 19 C 0.056 3.944 20 C -0.114 4.114 21 C -0.116 4.116 22 C -0.086 4.086 23 H 0.078 0.922 24 C -0.145 4.145 25 C 0.060 3.940 26 C -0.120 4.120 27 C -0.098 4.098 28 C -0.049 4.049 29 Cl -0.083 7.083 30 H 0.073 0.927 31 H 0.068 0.932 32 H 0.070 0.930 33 H 0.128 0.872 34 H 0.040 0.960 35 H 0.043 0.957 36 H 0.266 0.734 37 H 0.101 0.899 38 H 0.081 0.919 39 H 0.033 0.967 40 H 0.073 0.927 41 H 0.063 0.937 42 H 0.070 0.930 43 H 0.059 0.941 44 H 0.057 0.943 45 H 0.051 0.949 46 H 0.056 0.944 47 H 0.053 0.947 48 H 0.028 0.972 49 H 0.087 0.913 50 H 0.132 0.868 51 H 0.131 0.869 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.870 -0.356 -10.091 10.813 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.171 4.171 2 C -0.071 4.071 3 C -0.112 4.112 4 C 0.097 3.903 5 N -0.296 5.296 6 C 0.121 3.879 7 C -0.577 4.577 8 H 0.080 0.920 9 C -0.136 4.136 10 N -0.527 5.527 11 Si 0.722 3.278 12 H -0.196 1.196 13 H -0.207 1.207 14 H -0.207 1.207 15 C 0.314 3.686 16 O -0.414 6.414 17 C -0.088 4.088 18 N -0.247 5.247 19 C -0.072 4.072 20 C -0.152 4.152 21 C -0.153 4.153 22 C -0.105 4.105 23 H 0.096 0.904 24 C -0.203 4.203 25 C -0.067 4.067 26 C -0.139 4.139 27 C -0.118 4.118 28 C -0.076 4.076 29 Cl -0.055 7.055 30 H 0.091 0.909 31 H 0.087 0.913 32 H 0.089 0.911 33 H 0.146 0.854 34 H 0.058 0.942 35 H 0.061 0.939 36 H 0.076 0.924 37 H 0.119 0.881 38 H 0.098 0.902 39 H 0.052 0.948 40 H 0.092 0.908 41 H 0.082 0.918 42 H 0.088 0.912 43 H 0.078 0.922 44 H 0.076 0.924 45 H 0.071 0.929 46 H 0.075 0.925 47 H 0.072 0.928 48 H 0.046 0.954 49 H 0.105 0.895 50 H 0.149 0.851 51 H 0.149 0.851 Dipole moment (debyes) X Y Z Total from point charges -4.123 -0.871 -10.832 11.623 hybrid contribution -0.389 0.977 1.783 2.070 sum -4.512 0.106 -9.049 10.112 Atomic orbital electron populations 1.20824 0.90562 1.03089 1.02671 1.19544 0.96453 0.90992 1.00109 1.21064 0.93392 0.97216 0.99541 1.17596 0.90483 0.86061 0.96146 1.46013 1.49069 1.17317 1.17192 1.19584 0.90733 0.96670 0.80948 1.21451 0.97816 1.34287 1.04180 0.92027 1.24909 0.95072 0.95993 0.97601 1.69921 1.12873 1.45212 1.24678 0.86477 0.80694 0.79768 0.80829 1.19611 1.20674 1.20750 1.20437 0.82551 0.84344 0.81253 1.90631 1.40685 1.73235 1.36883 1.21930 0.99916 0.93838 0.93131 1.61567 1.02450 1.23542 1.37157 1.22082 0.95917 0.92408 0.96822 1.21555 0.96480 0.99423 0.97744 1.21657 0.94953 0.97576 1.01161 1.21121 0.94120 0.96908 0.98364 0.90363 1.21782 0.96372 1.00847 1.01292 1.22203 0.90279 0.98464 0.95800 1.21146 1.00384 0.90857 1.01556 1.20755 0.91686 0.98462 1.00867 1.20651 0.92154 0.85960 1.08801 1.98317 1.77074 1.32907 1.97159 0.90851 0.91256 0.91081 0.85366 0.94229 0.93913 0.92430 0.88147 0.90152 0.94846 0.90809 0.91792 0.91160 0.92177 0.92418 0.92948 0.92515 0.92810 0.95400 0.89503 0.85055 0.85073 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.50 9.61 36.01 0.35 -1.15 16 2 C -0.07 -1.12 5.88 -104.62 -0.62 -1.74 16 3 C -0.09 -1.71 9.01 -39.40 -0.35 -2.06 16 4 C 0.19 3.67 4.83 -83.68 -0.40 3.27 16 5 N -0.57 -11.59 2.51 -114.73 -0.29 -11.88 16 6 C 0.24 5.40 4.83 -5.19 -0.03 5.37 16 7 C -0.54 -13.47 9.24 -34.44 -0.32 -13.79 16 8 H 0.06 1.58 7.81 -52.49 -0.41 1.17 16 9 C 0.07 1.73 5.46 -17.82 -0.10 1.63 16 10 N -0.89 -23.62 13.29 55.43 0.74 -22.88 16 11 Si 0.90 20.09 29.54 -169.99 -5.02 15.07 16 12 H -0.27 -6.09 7.11 56.52 0.40 -5.69 16 13 H -0.28 -6.32 7.11 56.52 0.40 -5.92 16 14 H -0.28 -6.26 7.11 56.52 0.40 -5.86 16 15 C 0.53 10.52 7.08 -10.99 -0.08 10.45 16 16 O -0.54 -11.67 14.34 5.55 0.08 -11.59 16 17 C 0.04 0.75 3.88 -4.98 -0.02 0.73 16 18 N -0.52 -8.42 4.34 -236.12 -1.02 -9.45 16 19 C 0.06 0.74 5.46 -3.84 -0.02 0.72 16 20 C -0.11 -1.29 6.09 -26.65 -0.16 -1.45 16 21 C -0.12 -1.30 5.29 -26.61 -0.14 -1.44 16 22 C -0.09 -1.12 2.88 -90.54 -0.26 -1.38 16 23 H 0.08 1.11 8.14 -51.92 -0.42 0.68 16 24 C -0.15 -1.65 9.20 37.16 0.34 -1.30 16 25 C 0.06 0.95 4.40 -3.83 -0.02 0.94 16 26 C -0.12 -2.05 9.68 -39.40 -0.38 -2.43 16 27 C -0.10 -1.50 9.82 -39.57 -0.39 -1.89 16 28 C -0.05 -0.76 6.32 -39.48 -0.25 -1.00 16 29 Cl -0.08 -1.10 27.28 -51.86 -1.41 -2.51 16 30 H 0.07 0.90 8.14 -51.93 -0.42 0.47 16 31 H 0.07 0.85 8.09 -51.93 -0.42 0.43 16 32 H 0.07 0.85 6.90 -51.93 -0.36 0.49 16 33 H 0.13 2.42 8.06 -52.49 -0.42 2.00 16 34 H 0.04 0.95 7.85 -51.93 -0.41 0.54 16 35 H 0.04 0.97 6.56 -51.93 -0.34 0.63 16 36 H 0.27 6.73 8.31 -40.82 -0.34 6.40 16 37 H 0.10 1.65 7.71 -51.93 -0.40 1.25 16 38 H 0.08 1.53 7.59 -51.93 -0.39 1.14 16 39 H 0.03 0.45 8.14 -51.93 -0.42 0.03 16 40 H 0.07 0.92 8.00 -51.93 -0.42 0.50 16 41 H 0.06 0.61 8.14 -51.93 -0.42 0.18 16 42 H 0.07 0.83 8.14 -51.93 -0.42 0.40 16 43 H 0.06 0.59 8.14 -51.93 -0.42 0.17 16 44 H 0.06 0.65 8.14 -51.93 -0.42 0.22 16 45 H 0.05 0.58 8.14 -51.93 -0.42 0.15 16 46 H 0.06 0.66 8.14 -51.93 -0.42 0.24 16 47 H 0.05 0.53 8.14 -51.93 -0.42 0.10 16 48 H 0.03 0.45 8.14 -51.93 -0.42 0.02 16 49 H 0.09 1.58 6.10 -51.93 -0.32 1.27 16 50 H 0.13 2.08 8.06 -52.48 -0.42 1.66 16 51 H 0.13 1.65 8.06 -52.49 -0.42 1.23 16 LS Contribution 420.24 15.07 6.33 6.33 Total: -1.00 -27.57 420.24 -11.96 -39.53 By element: Atomic # 1 Polarization: 12.44 SS G_CDS: -8.52 Total: 3.93 kcal Atomic # 6 Polarization: -3.69 SS G_CDS: -2.85 Total: -6.54 kcal Atomic # 7 Polarization: -43.63 SS G_CDS: -0.58 Total: -44.21 kcal Atomic # 8 Polarization: -11.67 SS G_CDS: 0.08 Total: -11.59 kcal Atomic # 14 Polarization: 20.09 SS G_CDS: -5.02 Total: 15.07 kcal Atomic # 17 Polarization: -1.10 SS G_CDS: -1.41 Total: -2.51 kcal Total LS contribution 6.33 Total: 6.33 kcal Total: -27.57 -11.96 -39.53 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000032855963.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 13.756 kcal (2) G-P(sol) polarization free energy of solvation -27.566 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -13.810 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.962 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.528 kcal (6) G-S(sol) free energy of system = (1) + (5) -25.771 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.01 seconds