Wall clock time and date at job start Tue Mar 31 2020 05:28:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50705 * 1 3 3 C 1.38125 * 119.97028 * 2 1 4 4 C 1.38845 * 119.94185 * 180.27572 * 3 2 1 5 5 N 1.39966 * 120.05846 * 179.74773 * 4 3 2 6 6 C 1.46502 * 119.99804 * 112.07576 * 5 4 3 7 7 C 1.50700 * 109.46991 * 269.99952 * 6 5 4 8 8 H 1.07994 * 120.00151 * 359.97438 * 7 6 5 9 9 C 1.37879 * 120.00020 * 180.02562 * 7 6 5 10 10 N 1.31517 * 119.99733 * 359.97438 * 9 7 6 11 11 Si 1.86798 * 120.00300 * 179.97438 * 9 7 6 12 12 H 1.48507 * 109.46953 * 0.02562 * 11 9 7 13 13 H 1.48500 * 109.47376 * 119.99497 * 11 9 7 14 14 H 1.48496 * 109.47336 * 239.99815 * 11 9 7 15 15 C 1.34775 * 120.00178 * 292.07320 * 5 4 3 16 16 O 1.21289 * 119.99578 * 5.05197 * 15 5 4 17 17 C 1.50698 * 119.99951 * 185.04900 * 15 5 4 18 18 N 1.46901 * 109.47098 * 186.54025 * 17 15 5 19 19 C 1.46841 * 111.00369 * 190.97802 * 18 17 15 20 20 C 1.53035 * 109.52688 * 174.16127 * 19 18 17 21 21 C 1.53120 * 109.31290 * 59.15603 * 20 19 18 22 22 C 1.53123 * 109.15950 * 302.41089 * 21 20 19 23 23 H 1.09009 * 109.49991 * 297.63321 * 22 21 20 24 24 C 1.53003 * 109.50333 * 177.55470 * 22 21 20 25 25 C 1.46854 * 110.99986 * 66.76292 * 18 17 15 26 26 C 1.38883 * 119.88091 * 359.47019 * 4 3 2 27 27 C 1.38091 * 119.94804 * 0.25642 * 26 4 3 28 28 C 1.38360 * 119.97022 * 179.72614 * 2 1 3 29 29 Cl 1.73612 * 119.94192 * 359.97438 * 28 2 1 30 30 H 1.09003 * 109.47296 * 270.27174 * 1 2 3 31 31 H 1.08996 * 109.47168 * 30.27320 * 1 2 3 32 32 H 1.09002 * 109.47114 * 150.27921 * 1 2 3 33 33 H 1.07998 * 120.03283 * 0.02562 * 3 2 1 34 34 H 1.08997 * 109.47332 * 29.99697 * 6 5 4 35 35 H 1.09003 * 109.47053 * 149.99964 * 6 5 4 36 36 H 0.97008 * 119.99995 * 180.02562 * 10 9 7 37 37 H 1.08999 * 109.47408 * 66.54397 * 17 15 5 38 38 H 1.09001 * 109.47414 * 306.53719 * 17 15 5 39 39 H 1.09002 * 109.46308 * 294.17546 * 19 18 17 40 40 H 1.09003 * 109.46536 * 54.13864 * 19 18 17 41 41 H 1.08999 * 109.50765 * 179.11727 * 20 19 18 42 42 H 1.09004 * 109.50517 * 299.19667 * 20 19 18 43 43 H 1.08999 * 109.56136 * 182.48299 * 21 20 19 44 44 H 1.09002 * 109.49002 * 62.28910 * 21 20 19 45 45 H 1.09000 * 109.47160 * 300.07256 * 24 22 21 46 46 H 1.09005 * 109.46378 * 180.02562 * 24 22 21 47 47 H 1.08998 * 109.47009 * 60.07704 * 24 22 21 48 48 H 1.09000 * 109.46105 * 65.82850 * 25 18 17 49 49 H 1.08993 * 109.45411 * 305.85162 * 25 18 17 50 50 H 1.08004 * 120.02803 * 180.27298 * 26 4 3 51 51 H 1.07996 * 119.97322 * 179.97438 * 27 26 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1971 1.1966 0.0000 4 6 3.5855 1.1959 -0.0058 5 7 4.2871 2.4070 -0.0111 6 6 5.0718 2.8040 1.1606 7 6 4.2038 3.6013 2.0997 8 1 3.1712 3.7934 1.8487 9 6 4.7284 4.0864 3.2789 10 7 5.9861 3.8529 3.5843 11 14 3.6527 5.0753 4.4427 12 1 2.2869 5.1959 3.8724 13 1 3.5809 4.3863 5.7563 14 1 4.2350 6.4291 4.6251 15 6 4.2409 3.2078 -1.0942 16 8 3.5197 2.9247 -2.0273 17 6 5.0853 4.4549 -1.1456 18 7 4.7426 5.2291 -2.3462 19 6 5.7129 6.3080 -2.5714 20 6 5.4101 6.9985 -3.9032 21 6 3.9879 7.5648 -3.8680 22 6 3.0015 6.4288 -3.5830 23 1 3.0463 5.6970 -4.3897 24 6 1.5837 6.9958 -3.4857 25 6 3.3741 5.7548 -2.2605 26 6 4.2768 -0.0086 -0.0004 27 6 3.5823 -1.2021 0.0053 28 6 2.1982 -1.1986 0.0057 29 17 1.3279 -2.7008 0.0136 30 1 -0.3634 0.0049 1.0277 31 1 -0.3633 0.8875 -0.5180 32 1 -0.3633 -0.8925 -0.5095 33 1 1.6571 2.1319 0.0004 34 1 5.4376 1.9135 1.6717 35 1 5.9176 3.4134 0.8419 36 1 6.3551 4.1939 4.4142 37 1 6.1392 4.1791 -1.1799 38 1 4.8963 5.0586 -0.2580 39 1 5.6429 7.0343 -1.7617 40 1 6.7197 5.8912 -2.5991 41 1 6.1208 7.8094 -4.0626 42 1 5.4941 6.2760 -4.7151 43 1 3.7521 8.0190 -4.8304 44 1 3.9150 8.3163 -3.0818 45 1 1.5395 7.7274 -2.6789 46 1 0.8821 6.1867 -3.2823 47 1 1.3194 7.4768 -4.4274 48 1 3.3151 6.4837 -1.4522 49 1 2.6824 4.9361 -2.0626 50 1 5.3569 -0.0119 -0.0005 51 1 4.1194 -2.1390 0.0090 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000032855963.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:28:16 Heat of formation + Delta-G solvation = -37.655103 kcal Electronic energy + Delta-G solvation = -31512.582471 eV Core-core repulsion = 27436.411153 eV Total energy + Delta-G solvation = -4076.171317 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 364.166 amu Computer time = 1.20 seconds Orbital eigenvalues (eV) -41.64897 -40.32195 -39.30833 -37.52872 -36.66647 -35.22247 -34.68201 -33.62013 -32.84442 -31.36170 -29.21717 -28.44807 -27.89184 -27.48105 -25.02430 -24.65376 -23.57849 -22.75614 -22.26388 -20.58250 -20.11094 -18.69911 -18.30056 -17.80481 -17.45154 -17.07054 -16.54486 -16.46345 -16.22087 -15.71709 -15.39276 -15.16168 -15.07131 -15.01182 -14.84712 -14.40703 -14.22664 -13.98175 -13.83415 -13.57405 -13.45592 -13.42816 -13.34136 -13.30676 -13.12740 -12.82219 -12.77987 -12.66512 -12.55054 -12.42115 -12.36749 -12.14179 -11.92753 -11.82864 -11.66796 -11.55845 -11.28845 -11.22980 -10.76404 -10.60468 -10.08675 -9.82117 -9.32566 -9.20839 -8.26464 -6.40426 0.06875 0.27237 1.11447 1.34633 1.38570 1.47646 1.63842 2.03281 2.35573 2.55675 2.94372 3.04593 3.68109 3.77382 3.78383 3.82282 3.92570 4.03930 4.17213 4.18729 4.25656 4.31926 4.39460 4.44700 4.46183 4.51401 4.63517 4.65322 4.69855 4.72291 4.75203 4.82390 4.85250 4.88141 4.93902 4.99215 5.02772 5.09853 5.12038 5.15019 5.23771 5.27490 5.27836 5.36986 5.42934 5.52935 5.55950 5.64940 5.88494 5.97636 6.06404 6.16148 6.42134 6.70856 7.24115 7.34312 8.79276 Molecular weight = 364.17amu Principal moments of inertia in cm(-1) A = 0.006848 B = 0.003691 C = 0.002812 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 4087.859430 B = 7583.314157 C = 9953.689134 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.113 4.113 2 C -0.071 4.071 3 C -0.112 4.112 4 C 0.153 3.847 5 N -0.566 5.566 6 C 0.256 3.744 7 C -0.545 4.545 8 H 0.047 0.953 9 C 0.028 3.972 10 N -0.914 5.914 11 Si 0.950 3.050 12 H -0.274 1.274 13 H -0.277 1.277 14 H -0.274 1.274 15 C 0.522 3.478 16 O -0.557 6.557 17 C 0.050 3.950 18 N -0.530 5.530 19 C 0.051 3.949 20 C -0.109 4.109 21 C -0.112 4.112 22 C -0.083 4.083 23 H 0.065 0.935 24 C -0.141 4.141 25 C 0.063 3.937 26 C -0.129 4.129 27 C -0.090 4.090 28 C -0.052 4.052 29 Cl -0.057 7.057 30 H 0.084 0.916 31 H 0.072 0.928 32 H 0.085 0.915 33 H 0.111 0.889 34 H 0.024 0.976 35 H 0.040 0.960 36 H 0.269 0.731 37 H 0.112 0.888 38 H 0.062 0.938 39 H 0.031 0.969 40 H 0.083 0.917 41 H 0.090 0.910 42 H 0.066 0.934 43 H 0.082 0.918 44 H 0.060 0.940 45 H 0.054 0.946 46 H 0.045 0.955 47 H 0.075 0.925 48 H 0.021 0.979 49 H 0.054 0.946 50 H 0.139 0.861 51 H 0.162 0.838 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.283 -0.314 -10.752 11.578 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.169 4.169 2 C -0.072 4.072 3 C -0.132 4.132 4 C 0.062 3.938 5 N -0.295 5.295 6 C 0.136 3.864 7 C -0.584 4.584 8 H 0.065 0.935 9 C -0.173 4.173 10 N -0.553 5.553 11 Si 0.775 3.225 12 H -0.199 1.199 13 H -0.203 1.203 14 H -0.199 1.199 15 C 0.311 3.689 16 O -0.436 6.436 17 C -0.080 4.080 18 N -0.255 5.255 19 C -0.077 4.077 20 C -0.147 4.147 21 C -0.149 4.149 22 C -0.102 4.102 23 H 0.084 0.916 24 C -0.199 4.199 25 C -0.065 4.065 26 C -0.149 4.149 27 C -0.109 4.109 28 C -0.079 4.079 29 Cl -0.028 7.028 30 H 0.103 0.897 31 H 0.091 0.909 32 H 0.104 0.896 33 H 0.129 0.871 34 H 0.042 0.958 35 H 0.058 0.942 36 H 0.079 0.921 37 H 0.130 0.870 38 H 0.080 0.920 39 H 0.050 0.950 40 H 0.101 0.899 41 H 0.108 0.892 42 H 0.085 0.915 43 H 0.101 0.899 44 H 0.079 0.921 45 H 0.074 0.926 46 H 0.064 0.936 47 H 0.094 0.906 48 H 0.039 0.961 49 H 0.073 0.927 50 H 0.157 0.843 51 H 0.180 0.820 Dipole moment (debyes) X Y Z Total from point charges -4.542 -0.836 -11.500 12.393 hybrid contribution -0.313 0.838 1.970 2.163 sum -4.855 0.002 -9.531 10.696 Atomic orbital electron populations 1.20886 0.88456 1.03983 1.03617 1.19830 0.98027 0.90441 0.98916 1.21039 0.93266 0.97679 1.01226 1.17962 0.91129 0.86327 0.98356 1.45918 1.48918 1.18067 1.16587 1.19222 0.90471 0.95451 0.81227 1.21578 0.97374 1.34528 1.04892 0.93474 1.25538 0.96093 0.96819 0.98837 1.69990 1.13970 1.46100 1.25262 0.85628 0.79061 0.78808 0.78981 1.19874 1.20287 1.19925 1.20839 0.82416 0.84777 0.80826 1.90602 1.41585 1.73870 1.37519 1.21835 1.00025 0.92851 0.93327 1.61641 1.03228 1.24767 1.35845 1.22251 0.95603 0.91684 0.98114 1.21562 0.97232 0.99892 0.96019 1.21650 0.94173 0.96692 1.02422 1.21100 0.95810 0.97279 0.95967 0.91608 1.21759 0.95007 1.00569 1.02574 1.22148 0.89665 0.97214 0.97441 1.21301 1.00945 0.90820 1.01834 1.21080 0.91868 0.98878 0.99054 1.20803 0.92542 0.86856 1.07667 1.98326 1.76505 1.30956 1.96970 0.89740 0.90923 0.89634 0.87053 0.95787 0.94165 0.92149 0.86994 0.91981 0.95024 0.89906 0.89177 0.91526 0.89936 0.92129 0.92642 0.93619 0.90620 0.96111 0.92748 0.84300 0.82017 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -2.84 9.61 71.24 0.68 -2.15 16 2 C -0.07 -2.26 5.88 -19.86 -0.12 -2.38 16 3 C -0.11 -4.32 9.01 22.39 0.20 -4.12 16 4 C 0.15 6.20 4.83 38.14 0.18 6.38 16 5 N -0.57 -24.34 2.51 -635.28 -1.59 -25.94 16 6 C 0.26 12.05 4.83 85.63 0.41 12.46 16 7 C -0.55 -28.18 9.24 25.60 0.24 -27.94 16 8 H 0.05 2.53 7.81 -2.91 -0.02 2.51 16 9 C 0.03 1.46 5.46 84.65 0.46 1.92 16 10 N -0.91 -49.13 13.29 21.45 0.28 -48.84 16 11 Si 0.95 41.53 29.54 68.60 2.03 43.56 16 12 H -0.27 -11.99 7.11 99.48 0.71 -11.28 16 13 H -0.28 -11.92 7.11 99.48 0.71 -11.22 16 14 H -0.27 -11.59 7.11 99.48 0.71 -10.88 16 15 C 0.52 22.01 7.08 87.66 0.62 22.63 16 16 O -0.56 -25.47 14.34 -3.06 -0.04 -25.51 16 17 C 0.05 1.86 3.88 85.56 0.33 2.19 16 18 N -0.53 -17.51 4.34 -900.94 -3.91 -21.42 16 19 C 0.05 1.32 5.46 86.33 0.47 1.79 16 20 C -0.11 -2.26 6.09 30.65 0.19 -2.07 16 21 C -0.11 -2.29 5.29 30.68 0.16 -2.13 16 22 C -0.08 -2.13 2.88 -10.74 -0.03 -2.16 16 23 H 0.07 1.86 8.14 -2.38 -0.02 1.84 16 24 C -0.14 -3.11 9.20 71.98 0.66 -2.45 16 25 C 0.06 2.08 4.40 86.32 0.38 2.46 16 26 C -0.13 -4.48 9.68 22.39 0.22 -4.27 16 27 C -0.09 -2.63 9.82 22.27 0.22 -2.41 16 28 C -0.05 -1.53 6.32 22.34 0.14 -1.39 16 29 Cl -0.06 -1.36 27.28 -2.72 -0.07 -1.43 16 30 H 0.08 1.95 8.14 -2.39 -0.02 1.93 16 31 H 0.07 1.77 8.09 -2.39 -0.02 1.75 16 32 H 0.08 1.88 6.90 -2.39 -0.02 1.87 16 33 H 0.11 4.53 8.06 -2.91 -0.02 4.51 16 34 H 0.02 1.20 7.85 -2.39 -0.02 1.18 16 35 H 0.04 1.90 6.56 -2.39 -0.02 1.89 16 36 H 0.27 13.68 8.31 -92.70 -0.77 12.91 16 37 H 0.11 3.80 7.71 -2.39 -0.02 3.78 16 38 H 0.06 2.51 7.59 -2.39 -0.02 2.49 16 39 H 0.03 0.84 8.14 -2.39 -0.02 0.82 16 40 H 0.08 1.98 8.00 -2.39 -0.02 1.96 16 41 H 0.09 1.43 8.14 -2.39 -0.02 1.41 16 42 H 0.07 1.45 8.14 -2.38 -0.02 1.43 16 43 H 0.08 1.36 8.14 -2.39 -0.02 1.34 16 44 H 0.06 1.23 8.14 -2.39 -0.02 1.21 16 45 H 0.05 1.18 8.14 -2.39 -0.02 1.16 16 46 H 0.04 1.09 8.14 -2.38 -0.02 1.07 16 47 H 0.07 1.33 8.14 -2.39 -0.02 1.31 16 48 H 0.02 0.69 8.14 -2.39 -0.02 0.67 16 49 H 0.05 2.12 6.10 -2.39 -0.01 2.11 16 50 H 0.14 4.47 8.06 -2.91 -0.02 4.44 16 51 H 0.16 3.66 8.06 -2.91 -0.02 3.64 16 Total: -1.00 -60.39 420.24 3.02 -57.37 By element: Atomic # 1 Polarization: 24.94 SS G_CDS: 0.90 Total: 25.84 kcal Atomic # 6 Polarization: -9.06 SS G_CDS: 5.43 Total: -3.63 kcal Atomic # 7 Polarization: -90.98 SS G_CDS: -5.22 Total: -96.20 kcal Atomic # 8 Polarization: -25.47 SS G_CDS: -0.04 Total: -25.51 kcal Atomic # 14 Polarization: 41.53 SS G_CDS: 2.03 Total: 43.56 kcal Atomic # 17 Polarization: -1.36 SS G_CDS: -0.07 Total: -1.43 kcal Total: -60.39 3.02 -57.37 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000032855963.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 19.716 kcal (2) G-P(sol) polarization free energy of solvation -60.393 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -40.678 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.023 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -57.371 kcal (6) G-S(sol) free energy of system = (1) + (5) -37.655 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.21 seconds