Wall clock time and date at job start Tue Mar 31 2020 07:15:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31620 * 1 3 3 Si 1.86798 * 119.99606 * 2 1 4 4 H 1.48506 * 109.47333 * 185.00106 * 3 2 1 5 5 H 1.48503 * 109.47219 * 304.99902 * 3 2 1 6 6 H 1.48502 * 109.47442 * 65.00166 * 3 2 1 7 7 C 1.38810 * 120.00188 * 179.97438 * 2 1 3 8 8 H 1.08006 * 119.99608 * 174.88030 * 7 2 1 9 9 N 1.36931 * 120.00384 * 354.88471 * 7 2 1 10 10 C 1.46501 * 120.00407 * 184.92168 * 9 7 2 11 11 C 1.50701 * 109.46813 * 54.54097 * 10 9 7 12 12 N 1.30740 * 126.36433 * 250.30287 * 11 10 9 13 13 N 1.28417 * 110.64672 * 179.81810 * 12 11 10 14 14 N 1.28946 * 110.20372 * 0.45549 * 13 12 11 15 15 N 1.35065 * 126.36536 * 70.61410 * 11 10 9 16 16 C 1.40274 * 127.38720 * 0.03395 * 15 11 10 17 17 C 1.38821 * 120.06165 * 311.59615 * 16 15 11 18 18 C 1.38120 * 119.93151 * 179.77079 * 17 16 15 19 19 C 1.38280 * 120.06704 * 0.47966 * 18 17 16 20 20 C 1.38268 * 120.12798 * 359.79309 * 19 18 17 21 21 C 1.38133 * 120.06475 * 359.95436 * 20 19 18 22 22 C 1.52993 * 109.47293 * 174.53936 * 10 9 7 23 23 C 1.52998 * 109.47252 * 60.00114 * 22 10 9 24 24 C 1.53007 * 109.47048 * 59.99842 * 23 22 10 25 25 C 1.53002 * 109.46787 * 60.00048 * 24 23 22 26 26 C 1.53001 * 109.47185 * 300.00168 * 25 24 23 27 27 C 1.52997 * 109.47045 * 60.00233 * 26 25 24 28 28 C 1.52993 * 109.47008 * 299.99984 * 26 25 24 29 29 C 1.52997 * 109.47189 * 294.54447 * 10 9 7 30 30 C 1.52999 * 109.47102 * 300.00446 * 24 23 22 31 31 H 0.96999 * 120.00267 * 359.97438 * 1 2 3 32 32 H 0.97006 * 119.99735 * 4.91956 * 9 7 2 33 33 H 1.08000 * 120.03465 * 359.97438 * 17 16 15 34 34 H 1.08003 * 119.97036 * 180.22900 * 18 17 16 35 35 H 1.08001 * 119.93751 * 179.77023 * 19 18 17 36 36 H 1.07998 * 119.97268 * 179.97438 * 20 19 18 37 37 H 1.07999 * 120.02890 * 180.02562 * 21 20 19 38 38 H 1.09007 * 109.47337 * 300.00444 * 22 10 9 39 39 H 1.08998 * 109.47891 * 179.97438 * 23 22 10 40 40 H 1.09000 * 109.47263 * 299.99935 * 23 22 10 41 41 H 1.08995 * 109.46870 * 180.02562 * 24 23 22 42 42 H 1.08998 * 109.47019 * 179.97438 * 25 24 23 43 43 H 1.09003 * 109.46656 * 60.00237 * 25 24 23 44 44 H 1.08998 * 109.46678 * 180.02562 * 26 25 24 45 45 H 1.09007 * 109.46882 * 179.97438 * 27 26 25 46 46 H 1.08997 * 109.47696 * 59.99862 * 27 26 25 47 47 H 1.09005 * 109.47371 * 179.97438 * 28 26 25 48 48 H 1.09005 * 109.47681 * 300.00350 * 28 26 25 49 49 H 1.08997 * 109.47032 * 59.99355 * 29 10 9 50 50 H 1.08995 * 109.47456 * 179.97438 * 30 24 23 51 51 H 1.09000 * 109.46773 * 299.99640 * 30 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2501 1.6178 0.0000 4 1 3.7055 1.3492 -0.1221 5 1 1.8021 2.4480 -1.1469 6 1 1.9852 2.3424 1.2689 7 6 2.0103 -1.2021 0.0005 8 1 3.0871 -1.2039 -0.0829 9 7 1.3298 -2.3856 0.1068 10 6 2.0668 -3.6471 0.2160 11 6 3.0350 -3.5651 1.3679 12 7 4.3380 -3.4999 1.2822 13 7 4.8660 -3.4364 2.4510 14 7 3.9484 -3.4659 3.3564 15 7 2.7183 -3.5511 2.6808 16 6 1.4370 -3.6098 3.2486 17 6 0.4296 -2.7780 2.7792 18 6 -0.8324 -2.8413 3.3370 19 6 -1.0902 -3.7252 4.3687 20 6 -0.0873 -4.5510 4.8421 21 6 1.1753 -4.4957 4.2846 22 6 1.0827 -4.7933 0.4576 23 6 0.0996 -4.8766 -0.7118 24 6 0.8704 -5.1309 -2.0089 25 6 1.6400 -6.4484 -1.8948 26 6 2.6230 -6.3651 -0.7253 27 6 1.8522 -6.1108 0.5717 28 6 3.6071 -5.2188 -0.9669 29 6 2.8375 -3.9014 -1.0810 30 6 1.8545 -3.9847 -2.2504 31 1 -0.4850 0.8400 0.0004 32 1 0.3598 -2.3888 0.1098 33 1 0.6315 -2.0843 1.9764 34 1 -1.6175 -2.1971 2.9698 35 1 -2.0768 -3.7704 4.8058 36 1 -0.2913 -5.2400 5.6482 37 1 1.9582 -5.1413 4.6546 38 1 0.5335 -4.6121 1.3816 39 1 -0.6012 -5.6935 -0.5400 40 1 -0.4487 -3.9381 -0.7931 41 1 0.1701 -5.1898 -2.8420 42 1 2.1887 -6.6298 -2.8189 43 1 0.9388 -7.2650 -1.7227 44 1 3.1716 -7.3035 -0.6443 45 1 2.5526 -6.0519 1.4049 46 1 1.1511 -6.9274 0.7438 47 1 4.3072 -5.1592 -0.1335 48 1 4.1562 -5.3999 -1.8909 49 1 3.5386 -3.0847 -1.2530 50 1 2.4039 -4.1660 -3.1742 51 1 1.3062 -3.0461 -2.3317 RHF calculation, no. of doubly occupied orbitals= 68 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000035170790.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:15:35 Heat of formation + Delta-G solvation = 155.202657 kcal Electronic energy + Delta-G solvation = -36834.345198 eV Core-core repulsion = 32735.836510 eV Total energy + Delta-G solvation = -4098.508687 eV No. of doubly occupied orbitals = 68 Molecular weight (most abundant/longest-lived isotopes) = 365.191 amu Computer time = 3.27 seconds Orbital eigenvalues (eV) -42.79549 -41.00136 -39.11394 -35.57199 -34.41484 -32.86303 -32.32749 -32.15464 -30.86449 -30.72356 -29.69562 -29.41612 -25.76227 -25.53761 -24.38289 -23.41962 -22.96044 -21.85782 -21.70314 -20.95248 -20.73000 -20.02788 -18.07283 -17.41897 -17.05205 -16.18167 -16.01212 -15.18535 -15.02597 -14.71249 -14.56810 -14.20694 -14.15725 -13.96000 -13.72579 -13.39513 -13.30616 -13.14759 -12.94943 -12.70723 -12.59504 -12.32824 -12.19828 -11.99583 -11.88912 -11.53225 -11.43595 -11.27139 -11.08049 -11.02279 -10.92593 -10.68142 -10.57009 -10.46053 -10.41969 -10.26535 -10.21285 -10.00779 -9.61591 -9.48453 -9.26562 -9.25970 -9.06580 -8.83854 -8.46483 -7.35273 -6.08428 -3.41104 0.96294 1.47891 1.83055 2.39730 2.93139 3.29562 3.38306 3.42292 3.79566 4.35240 4.41444 4.72059 4.81245 4.89937 4.92812 5.02574 5.15610 5.21357 5.27201 5.36629 5.38142 5.41189 5.45635 5.56326 5.57453 5.61847 5.64569 5.67821 5.69007 5.75176 5.82683 5.92421 5.97185 6.01859 6.05583 6.11226 6.18086 6.19907 6.22901 6.27309 6.32348 6.37916 6.41405 6.42202 6.52460 6.60402 6.62951 6.68577 6.80401 6.83385 6.91519 6.99965 7.06333 7.24385 7.56472 8.07173 9.07709 9.22782 9.63022 10.02549 11.11349 Molecular weight = 365.19amu Principal moments of inertia in cm(-1) A = 0.007272 B = 0.006666 C = 0.005091 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3849.306317 B = 4199.417931 C = 5498.834625 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.921 5.921 2 C 0.006 3.994 3 Si 0.901 3.099 4 H -0.277 1.277 5 H -0.288 1.288 6 H -0.289 1.289 7 C -0.260 4.260 8 H 0.077 0.923 9 N -0.696 5.696 10 C 0.284 3.716 11 C 0.294 3.706 12 N -0.338 5.338 13 N -0.051 5.051 14 N -0.108 5.108 15 N -0.326 5.326 16 C 0.127 3.873 17 C -0.103 4.103 18 C -0.105 4.105 19 C -0.112 4.112 20 C -0.120 4.120 21 C -0.105 4.105 22 C -0.092 4.092 23 C -0.101 4.101 24 C -0.084 4.084 25 C -0.104 4.104 26 C -0.085 4.085 27 C -0.104 4.104 28 C -0.117 4.117 29 C -0.073 4.073 30 C -0.100 4.100 31 H 0.260 0.740 32 H 0.394 0.606 33 H 0.186 0.814 34 H 0.136 0.864 35 H 0.125 0.875 36 H 0.128 0.872 37 H 0.125 0.875 38 H 0.077 0.923 39 H 0.058 0.942 40 H 0.075 0.925 41 H 0.066 0.934 42 H 0.059 0.941 43 H 0.055 0.945 44 H 0.063 0.937 45 H 0.048 0.952 46 H 0.063 0.937 47 H 0.074 0.926 48 H 0.059 0.941 49 H 0.083 0.917 50 H 0.054 0.946 51 H 0.082 0.918 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.318 -13.214 1.658 14.001 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.566 5.566 2 C -0.192 4.192 3 Si 0.732 3.268 4 H -0.202 1.202 5 H -0.214 1.214 6 H -0.216 1.216 7 C -0.390 4.390 8 H 0.095 0.905 9 N -0.339 5.339 10 C 0.188 3.812 11 C 0.015 3.985 12 N -0.190 5.190 13 N -0.046 5.046 14 N -0.093 5.093 15 N -0.116 5.116 16 C 0.036 3.964 17 C -0.123 4.123 18 C -0.124 4.124 19 C -0.130 4.130 20 C -0.139 4.139 21 C -0.125 4.125 22 C -0.112 4.112 23 C -0.138 4.138 24 C -0.103 4.103 25 C -0.142 4.142 26 C -0.104 4.104 27 C -0.142 4.142 28 C -0.155 4.155 29 C -0.094 4.094 30 C -0.137 4.137 31 H 0.070 0.930 32 H 0.232 0.768 33 H 0.203 0.797 34 H 0.153 0.847 35 H 0.143 0.857 36 H 0.145 0.855 37 H 0.143 0.857 38 H 0.095 0.905 39 H 0.077 0.923 40 H 0.093 0.907 41 H 0.084 0.916 42 H 0.078 0.922 43 H 0.074 0.926 44 H 0.081 0.919 45 H 0.067 0.933 46 H 0.082 0.918 47 H 0.092 0.908 48 H 0.078 0.922 49 H 0.101 0.899 50 H 0.073 0.927 51 H 0.100 0.900 Dipole moment (debyes) X Y Z Total from point charges -2.856 -12.930 2.177 13.419 hybrid contribution -0.591 1.092 0.152 1.251 sum -3.447 -11.838 2.329 12.548 Atomic orbital electron populations 1.69644 1.04939 1.26340 1.55721 1.24710 0.95488 0.97696 1.01283 0.86202 0.79465 0.83790 0.77386 1.20194 1.21426 1.21614 1.19271 0.91982 0.83335 1.44383 0.90469 1.42782 1.05750 0.99897 1.85455 1.18282 0.87663 0.88171 0.87134 1.27455 0.93681 0.91050 0.86324 1.74386 1.05245 1.23458 1.15880 1.77884 1.22236 1.10043 0.94416 1.82493 0.85175 1.23346 1.18261 1.48778 1.06335 1.50928 1.05591 1.17470 0.81155 0.99650 0.98106 1.22535 0.91736 0.97228 1.00800 1.21193 0.96672 0.98593 0.95920 1.21333 0.99212 0.95773 0.96706 1.20921 0.92291 1.00218 1.00443 1.20992 0.97794 0.97868 0.95868 1.21389 0.96224 0.93748 0.99826 1.21470 0.96706 1.02006 0.93636 1.21044 0.96968 0.95062 0.97204 1.21530 0.97694 0.97134 0.97828 1.21053 0.96268 0.98416 0.94630 1.21498 0.98536 0.96831 0.97323 1.21722 0.97489 0.94097 1.02179 1.21233 0.96888 0.97270 0.93998 1.21444 0.96748 0.98924 0.96590 0.93032 0.76778 0.79697 0.84656 0.85678 0.85457 0.85657 0.90496 0.92281 0.90688 0.91586 0.92242 0.92637 0.91888 0.93299 0.91823 0.90774 0.92211 0.89896 0.92750 0.89962 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -23.78 13.07 55.49 0.73 -23.06 16 2 C 0.01 0.16 5.50 -17.43 -0.10 0.06 16 3 Si 0.90 21.40 29.56 -169.99 -5.02 16.37 16 4 H -0.28 -6.69 7.11 56.52 0.40 -6.29 16 5 H -0.29 -6.83 7.11 56.52 0.40 -6.43 16 6 H -0.29 -7.01 7.11 56.52 0.40 -6.61 16 7 C -0.26 -6.36 8.32 -15.06 -0.13 -6.49 16 8 H 0.08 2.03 7.33 -52.48 -0.38 1.64 16 9 N -0.70 -14.52 1.81 -48.31 -0.09 -14.61 16 10 C 0.28 5.15 0.08 -132.98 -0.01 5.14 16 11 C 0.29 5.88 4.05 -155.19 -0.63 5.25 16 12 N -0.34 -7.23 9.74 32.75 0.32 -6.91 16 13 N -0.05 -1.11 13.39 60.35 0.81 -0.30 16 14 N -0.11 -2.26 13.87 60.35 0.84 -1.43 16 15 N -0.33 -6.42 3.71 -7.97 -0.03 -6.45 16 16 C 0.13 2.23 4.64 -83.57 -0.39 1.84 16 17 C -0.10 -1.82 7.30 -39.41 -0.29 -2.11 16 18 C -0.10 -1.53 10.04 -39.61 -0.40 -1.92 16 19 C -0.11 -1.32 10.04 -39.55 -0.40 -1.72 16 20 C -0.12 -1.42 10.04 -39.61 -0.40 -1.82 16 21 C -0.10 -1.52 9.94 -39.41 -0.39 -1.91 16 22 C -0.09 -1.43 1.99 -90.62 -0.18 -1.61 16 23 C -0.10 -1.42 5.02 -26.73 -0.13 -1.55 16 24 C -0.08 -1.13 3.20 -90.62 -0.29 -1.42 16 25 C -0.10 -1.26 5.19 -26.73 -0.14 -1.39 16 26 C -0.09 -1.14 3.19 -90.62 -0.29 -1.43 16 27 C -0.10 -1.47 4.97 -26.73 -0.13 -1.61 16 28 C -0.12 -1.81 4.93 -26.73 -0.13 -1.94 16 29 C -0.07 -1.27 1.85 -90.62 -0.17 -1.44 16 30 C -0.10 -1.57 5.04 -26.73 -0.13 -1.70 16 31 H 0.26 6.64 8.31 -40.82 -0.34 6.30 16 32 H 0.39 8.45 5.62 -40.82 -0.23 8.22 16 33 H 0.19 3.93 4.52 -52.49 -0.24 3.70 16 34 H 0.14 1.85 8.06 -52.48 -0.42 1.43 16 35 H 0.13 1.11 8.06 -52.49 -0.42 0.69 16 36 H 0.13 1.12 8.06 -52.49 -0.42 0.70 16 37 H 0.13 1.72 8.06 -52.49 -0.42 1.30 16 38 H 0.08 1.24 4.71 -51.93 -0.24 0.99 16 39 H 0.06 0.73 8.14 -51.93 -0.42 0.30 16 40 H 0.07 1.17 6.76 -51.93 -0.35 0.82 16 41 H 0.07 0.82 8.14 -51.93 -0.42 0.39 16 42 H 0.06 0.67 8.14 -51.93 -0.42 0.25 16 43 H 0.05 0.60 8.14 -51.93 -0.42 0.18 16 44 H 0.06 0.78 8.14 -51.93 -0.42 0.35 16 45 H 0.05 0.77 7.22 -51.93 -0.37 0.40 16 46 H 0.06 0.79 8.14 -51.93 -0.42 0.37 16 47 H 0.07 1.29 5.89 -51.93 -0.31 0.98 16 48 H 0.06 0.85 8.14 -51.93 -0.42 0.43 16 49 H 0.08 1.67 7.47 -51.93 -0.39 1.29 16 50 H 0.05 0.78 8.14 -51.93 -0.42 0.36 16 51 H 0.08 1.50 7.60 -51.93 -0.39 1.11 16 LS Contribution 374.58 15.07 5.64 5.64 Total: -1.00 -26.99 374.58 -8.64 -35.63 By element: Atomic # 1 Polarization: 19.99 SS G_CDS: -7.12 Total: 12.87 kcal Atomic # 6 Polarization: -13.05 SS G_CDS: -4.72 Total: -17.77 kcal Atomic # 7 Polarization: -55.32 SS G_CDS: 2.57 Total: -52.75 kcal Atomic # 14 Polarization: 21.40 SS G_CDS: -5.02 Total: 16.37 kcal Total LS contribution 5.64 Total: 5.64 kcal Total: -26.99 -8.64 -35.63 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000035170790.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 190.835 kcal (2) G-P(sol) polarization free energy of solvation -26.987 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 163.848 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.645 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.632 kcal (6) G-S(sol) free energy of system = (1) + (5) 155.203 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 3.27 seconds