Wall clock time and date at job start Tue Mar 31 2020 07:15:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31620 * 1 3 3 Si 1.86798 * 119.99606 * 2 1 4 4 H 1.48506 * 109.47333 * 185.00106 * 3 2 1 5 5 H 1.48503 * 109.47219 * 304.99902 * 3 2 1 6 6 H 1.48502 * 109.47442 * 65.00166 * 3 2 1 7 7 C 1.38810 * 120.00188 * 179.97438 * 2 1 3 8 8 H 1.08006 * 119.99608 * 174.88030 * 7 2 1 9 9 N 1.36931 * 120.00384 * 354.88471 * 7 2 1 10 10 C 1.46501 * 120.00407 * 184.92168 * 9 7 2 11 11 C 1.50701 * 109.46813 * 54.54097 * 10 9 7 12 12 N 1.30740 * 126.36433 * 250.30287 * 11 10 9 13 13 N 1.28417 * 110.64672 * 179.81810 * 12 11 10 14 14 N 1.28946 * 110.20372 * 0.45549 * 13 12 11 15 15 N 1.35065 * 126.36536 * 70.61410 * 11 10 9 16 16 C 1.40274 * 127.38720 * 0.03395 * 15 11 10 17 17 C 1.38821 * 120.06165 * 311.59615 * 16 15 11 18 18 C 1.38120 * 119.93151 * 179.77079 * 17 16 15 19 19 C 1.38280 * 120.06704 * 0.47966 * 18 17 16 20 20 C 1.38268 * 120.12798 * 359.79309 * 19 18 17 21 21 C 1.38133 * 120.06475 * 359.95436 * 20 19 18 22 22 C 1.52993 * 109.47293 * 174.53936 * 10 9 7 23 23 C 1.52998 * 109.47252 * 60.00114 * 22 10 9 24 24 C 1.53007 * 109.47048 * 59.99842 * 23 22 10 25 25 C 1.53002 * 109.46787 * 60.00048 * 24 23 22 26 26 C 1.53001 * 109.47185 * 300.00168 * 25 24 23 27 27 C 1.52997 * 109.47045 * 60.00233 * 26 25 24 28 28 C 1.52993 * 109.47008 * 299.99984 * 26 25 24 29 29 C 1.52997 * 109.47189 * 294.54447 * 10 9 7 30 30 C 1.52999 * 109.47102 * 300.00446 * 24 23 22 31 31 H 0.96999 * 120.00267 * 359.97438 * 1 2 3 32 32 H 0.97006 * 119.99735 * 4.91956 * 9 7 2 33 33 H 1.08000 * 120.03465 * 359.97438 * 17 16 15 34 34 H 1.08003 * 119.97036 * 180.22900 * 18 17 16 35 35 H 1.08001 * 119.93751 * 179.77023 * 19 18 17 36 36 H 1.07998 * 119.97268 * 179.97438 * 20 19 18 37 37 H 1.07999 * 120.02890 * 180.02562 * 21 20 19 38 38 H 1.09007 * 109.47337 * 300.00444 * 22 10 9 39 39 H 1.08998 * 109.47891 * 179.97438 * 23 22 10 40 40 H 1.09000 * 109.47263 * 299.99935 * 23 22 10 41 41 H 1.08995 * 109.46870 * 180.02562 * 24 23 22 42 42 H 1.08998 * 109.47019 * 179.97438 * 25 24 23 43 43 H 1.09003 * 109.46656 * 60.00237 * 25 24 23 44 44 H 1.08998 * 109.46678 * 180.02562 * 26 25 24 45 45 H 1.09007 * 109.46882 * 179.97438 * 27 26 25 46 46 H 1.08997 * 109.47696 * 59.99862 * 27 26 25 47 47 H 1.09005 * 109.47371 * 179.97438 * 28 26 25 48 48 H 1.09005 * 109.47681 * 300.00350 * 28 26 25 49 49 H 1.08997 * 109.47032 * 59.99355 * 29 10 9 50 50 H 1.08995 * 109.47456 * 179.97438 * 30 24 23 51 51 H 1.09000 * 109.46773 * 299.99640 * 30 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2501 1.6178 0.0000 4 1 3.7055 1.3492 -0.1221 5 1 1.8021 2.4480 -1.1469 6 1 1.9852 2.3424 1.2689 7 6 2.0103 -1.2021 0.0005 8 1 3.0871 -1.2039 -0.0829 9 7 1.3298 -2.3856 0.1068 10 6 2.0668 -3.6471 0.2160 11 6 3.0350 -3.5651 1.3679 12 7 4.3380 -3.4999 1.2822 13 7 4.8660 -3.4364 2.4510 14 7 3.9484 -3.4659 3.3564 15 7 2.7183 -3.5511 2.6808 16 6 1.4370 -3.6098 3.2486 17 6 0.4296 -2.7780 2.7792 18 6 -0.8324 -2.8413 3.3370 19 6 -1.0902 -3.7252 4.3687 20 6 -0.0873 -4.5510 4.8421 21 6 1.1753 -4.4957 4.2846 22 6 1.0827 -4.7933 0.4576 23 6 0.0996 -4.8766 -0.7118 24 6 0.8704 -5.1309 -2.0089 25 6 1.6400 -6.4484 -1.8948 26 6 2.6230 -6.3651 -0.7253 27 6 1.8522 -6.1108 0.5717 28 6 3.6071 -5.2188 -0.9669 29 6 2.8375 -3.9014 -1.0810 30 6 1.8545 -3.9847 -2.2504 31 1 -0.4850 0.8400 0.0004 32 1 0.3598 -2.3888 0.1098 33 1 0.6315 -2.0843 1.9764 34 1 -1.6175 -2.1971 2.9698 35 1 -2.0768 -3.7704 4.8058 36 1 -0.2913 -5.2400 5.6482 37 1 1.9582 -5.1413 4.6546 38 1 0.5335 -4.6121 1.3816 39 1 -0.6012 -5.6935 -0.5400 40 1 -0.4487 -3.9381 -0.7931 41 1 0.1701 -5.1898 -2.8420 42 1 2.1887 -6.6298 -2.8189 43 1 0.9388 -7.2650 -1.7227 44 1 3.1716 -7.3035 -0.6443 45 1 2.5526 -6.0519 1.4049 46 1 1.1511 -6.9274 0.7438 47 1 4.3072 -5.1592 -0.1335 48 1 4.1562 -5.3999 -1.8909 49 1 3.5386 -3.0847 -1.2530 50 1 2.4039 -4.1660 -3.1742 51 1 1.3062 -3.0461 -2.3317 RHF calculation, no. of doubly occupied orbitals= 68 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000035170790.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:15:32 Heat of formation + Delta-G solvation = 142.181715 kcal Electronic energy + Delta-G solvation = -36834.909828 eV Core-core repulsion = 32735.836510 eV Total energy + Delta-G solvation = -4099.073318 eV No. of doubly occupied orbitals = 68 Molecular weight (most abundant/longest-lived isotopes) = 365.191 amu Computer time = 2.81 seconds Orbital eigenvalues (eV) -44.33700 -42.29692 -40.29158 -37.07350 -35.87633 -34.41089 -33.64842 -33.49397 -32.32813 -31.94739 -31.03806 -30.85455 -27.23197 -26.73887 -25.93299 -25.04441 -24.23916 -23.11279 -22.98891 -22.24004 -21.93034 -21.39147 -19.40269 -19.22333 -18.39345 -17.68669 -17.15956 -16.85651 -16.30141 -15.98324 -15.92804 -15.79690 -15.43496 -15.31378 -15.09885 -14.72844 -14.57571 -14.34810 -14.20718 -14.02539 -13.99402 -13.58330 -13.54880 -13.30772 -13.18751 -13.14587 -13.00317 -12.65105 -12.47892 -12.44854 -12.34054 -12.16840 -12.13053 -11.88652 -11.75559 -11.71718 -11.63424 -11.60053 -11.13120 -11.05404 -10.57360 -10.50205 -10.48552 -9.97642 -9.69593 -9.14204 -8.07987 -5.36021 -0.38118 0.35676 0.42329 0.95002 1.30333 1.32667 1.37997 1.44965 2.42272 2.66475 2.93365 3.35018 3.40733 3.59921 3.66957 3.71315 3.90834 3.94715 4.04019 4.13483 4.15639 4.21712 4.33345 4.35560 4.37913 4.40609 4.42120 4.45997 4.50084 4.51823 4.54523 4.64926 4.71940 4.80944 4.86806 4.91278 4.98608 5.08279 5.11120 5.16151 5.20223 5.20941 5.27179 5.33160 5.35350 5.41466 5.43051 5.47460 5.52676 5.58612 5.62053 5.66610 5.70394 5.78271 6.00011 6.14022 7.25137 7.45082 7.81443 8.16438 9.11613 Molecular weight = 365.19amu Principal moments of inertia in cm(-1) A = 0.007272 B = 0.006666 C = 0.005091 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3849.306317 B = 4199.417931 C = 5498.834625 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.934 5.934 2 C -0.032 4.032 3 Si 0.939 3.061 4 H -0.289 1.289 5 H -0.283 1.283 6 H -0.294 1.294 7 C -0.244 4.244 8 H 0.051 0.949 9 N -0.692 5.692 10 C 0.285 3.715 11 C 0.287 3.713 12 N -0.357 5.357 13 N -0.070 5.070 14 N -0.119 5.119 15 N -0.319 5.319 16 C 0.095 3.905 17 C -0.126 4.126 18 C -0.110 4.110 19 C -0.090 4.090 20 C -0.102 4.102 21 C -0.106 4.106 22 C -0.087 4.087 23 C -0.098 4.098 24 C -0.081 4.081 25 C -0.096 4.096 26 C -0.082 4.082 27 C -0.100 4.100 28 C -0.113 4.113 29 C -0.073 4.073 30 C -0.095 4.095 31 H 0.257 0.743 32 H 0.391 0.609 33 H 0.147 0.853 34 H 0.139 0.861 35 H 0.168 0.832 36 H 0.171 0.829 37 H 0.131 0.869 38 H 0.072 0.928 39 H 0.090 0.910 40 H 0.052 0.948 41 H 0.085 0.915 42 H 0.073 0.927 43 H 0.083 0.917 44 H 0.083 0.917 45 H 0.026 0.974 46 H 0.093 0.907 47 H 0.050 0.950 48 H 0.072 0.928 49 H 0.039 0.961 50 H 0.067 0.933 51 H 0.048 0.952 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.909 -16.712 2.436 18.247 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.581 5.581 2 C -0.228 4.228 3 Si 0.769 3.231 4 H -0.215 1.215 5 H -0.209 1.209 6 H -0.222 1.222 7 C -0.376 4.376 8 H 0.069 0.931 9 N -0.334 5.334 10 C 0.189 3.811 11 C 0.009 3.991 12 N -0.209 5.209 13 N -0.064 5.064 14 N -0.104 5.104 15 N -0.109 5.109 16 C 0.005 3.995 17 C -0.146 4.146 18 C -0.129 4.129 19 C -0.108 4.108 20 C -0.120 4.120 21 C -0.126 4.126 22 C -0.107 4.107 23 C -0.135 4.135 24 C -0.099 4.099 25 C -0.134 4.134 26 C -0.101 4.101 27 C -0.137 4.137 28 C -0.151 4.151 29 C -0.094 4.094 30 C -0.133 4.133 31 H 0.066 0.934 32 H 0.229 0.771 33 H 0.164 0.836 34 H 0.157 0.843 35 H 0.186 0.814 36 H 0.189 0.811 37 H 0.149 0.851 38 H 0.090 0.910 39 H 0.108 0.892 40 H 0.071 0.929 41 H 0.104 0.896 42 H 0.091 0.909 43 H 0.102 0.898 44 H 0.101 0.899 45 H 0.045 0.955 46 H 0.112 0.888 47 H 0.068 0.932 48 H 0.090 0.910 49 H 0.058 0.942 50 H 0.085 0.915 51 H 0.067 0.933 Dipole moment (debyes) X Y Z Total from point charges -5.443 -16.444 2.959 17.572 hybrid contribution 0.203 2.186 0.019 2.195 sum -5.240 -14.258 2.978 15.480 Atomic orbital electron populations 1.69694 1.05096 1.26154 1.57188 1.25048 0.96097 0.99060 1.02619 0.85629 0.78019 0.82326 0.77084 1.21472 1.20918 1.22170 1.19104 0.90840 0.85006 1.42644 0.93069 1.42635 1.05460 0.99932 1.85351 1.18544 0.87974 0.88014 0.86562 1.27639 0.93473 0.90942 0.87086 1.74329 1.06357 1.24113 1.16111 1.77836 1.22856 1.11073 0.94651 1.82368 0.85843 1.23632 1.18551 1.48912 1.06840 1.49759 1.05423 1.17792 0.79956 1.01705 1.00066 1.22221 0.93511 0.97713 1.01180 1.21321 0.95308 0.99506 0.96733 1.21761 1.01023 0.93449 0.94596 1.21413 0.90568 0.99838 1.00213 1.21207 0.99411 0.97153 0.94825 1.21379 0.95805 0.93125 1.00363 1.21476 0.96664 1.02081 0.93313 1.21054 0.96634 0.94727 0.97464 1.21507 0.97618 0.96662 0.97578 1.21081 0.96131 0.97882 0.94970 1.21500 0.98542 0.96691 0.97015 1.21668 0.97640 0.93981 1.01843 1.21183 0.96687 0.97136 0.94409 1.21382 0.96793 0.98822 0.96306 0.93395 0.77053 0.83620 0.84332 0.81443 0.81126 0.85127 0.90989 0.89181 0.92929 0.89641 0.90854 0.89836 0.89852 0.95550 0.88844 0.93176 0.90968 0.94216 0.91458 0.93323 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -50.07 13.07 21.65 0.28 -49.79 16 2 C -0.03 -1.73 5.50 84.86 0.47 -1.27 16 3 Si 0.94 45.90 29.56 68.60 2.03 47.93 16 4 H -0.29 -14.53 7.11 99.48 0.71 -13.82 16 5 H -0.28 -13.50 7.11 99.48 0.71 -12.80 16 6 H -0.29 -14.53 7.11 99.48 0.71 -13.82 16 7 C -0.24 -12.78 8.32 84.03 0.70 -12.08 16 8 H 0.05 2.92 7.33 -2.91 -0.02 2.90 16 9 N -0.69 -30.53 1.81 -306.76 -0.55 -31.09 16 10 C 0.28 10.73 0.08 2.85 0.00 10.73 16 11 C 0.29 12.08 4.05 138.05 0.56 12.64 16 12 N -0.36 -16.23 9.74 -50.29 -0.49 -16.72 16 13 N -0.07 -3.18 13.39 37.02 0.50 -2.68 16 14 N -0.12 -5.20 13.87 37.02 0.51 -4.68 16 15 N -0.32 -13.04 3.71 -179.12 -0.66 -13.70 16 16 C 0.10 3.33 4.64 38.07 0.18 3.51 16 17 C -0.13 -4.52 7.30 22.38 0.16 -4.36 16 18 C -0.11 -3.03 10.04 22.25 0.22 -2.81 16 19 C -0.09 -1.75 10.04 22.29 0.22 -1.53 16 20 C -0.10 -1.96 10.04 22.25 0.22 -1.73 16 21 C -0.11 -2.85 9.94 22.38 0.22 -2.63 16 22 C -0.09 -2.62 1.99 -10.80 -0.02 -2.64 16 23 C -0.10 -2.56 5.02 30.60 0.15 -2.41 16 24 C -0.08 -1.96 3.20 -10.79 -0.03 -1.99 16 25 C -0.10 -1.91 5.19 30.60 0.16 -1.75 16 26 C -0.08 -1.98 3.19 -10.80 -0.03 -2.02 16 27 C -0.10 -2.60 4.97 30.59 0.15 -2.45 16 28 C -0.11 -3.49 4.93 30.59 0.15 -3.34 16 29 C -0.07 -2.65 1.85 -10.79 -0.02 -2.67 16 30 C -0.10 -3.02 5.04 30.59 0.15 -2.86 16 31 H 0.26 13.53 8.31 -92.71 -0.77 12.76 16 32 H 0.39 17.70 5.62 -92.70 -0.52 17.18 16 33 H 0.15 6.53 4.52 -2.91 -0.01 6.52 16 34 H 0.14 3.66 8.06 -2.91 -0.02 3.63 16 35 H 0.17 1.93 8.06 -2.91 -0.02 1.90 16 36 H 0.17 1.89 8.06 -2.91 -0.02 1.87 16 37 H 0.13 3.35 8.06 -2.91 -0.02 3.33 16 38 H 0.07 2.26 4.71 -2.38 -0.01 2.25 16 39 H 0.09 1.83 8.14 -2.39 -0.02 1.81 16 40 H 0.05 1.62 6.76 -2.39 -0.02 1.61 16 41 H 0.09 1.81 8.14 -2.39 -0.02 1.79 16 42 H 0.07 1.31 8.14 -2.39 -0.02 1.29 16 43 H 0.08 1.29 8.14 -2.39 -0.02 1.27 16 44 H 0.08 1.74 8.14 -2.39 -0.02 1.72 16 45 H 0.03 0.80 7.22 -2.38 -0.02 0.79 16 46 H 0.09 1.91 8.14 -2.39 -0.02 1.89 16 47 H 0.05 1.80 5.89 -2.38 -0.01 1.78 16 48 H 0.07 2.01 8.14 -2.38 -0.02 1.99 16 49 H 0.04 1.74 7.47 -2.39 -0.02 1.72 16 50 H 0.07 1.91 8.14 -2.39 -0.02 1.89 16 51 H 0.05 1.85 7.60 -2.39 -0.02 1.83 16 Total: -1.00 -64.78 374.58 5.68 -59.10 By element: Atomic # 1 Polarization: 32.83 SS G_CDS: 0.45 Total: 33.28 kcal Atomic # 6 Polarization: -25.26 SS G_CDS: 3.62 Total: -21.65 kcal Atomic # 7 Polarization: -118.25 SS G_CDS: -0.42 Total: -118.66 kcal Atomic # 14 Polarization: 45.90 SS G_CDS: 2.03 Total: 47.93 kcal Total: -64.78 5.68 -59.10 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000035170790.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 201.285 kcal (2) G-P(sol) polarization free energy of solvation -64.780 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 136.504 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.677 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -59.103 kcal (6) G-S(sol) free energy of system = (1) + (5) 142.182 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 2.81 seconds