Wall clock time and date at job start Tue Mar 31 2020 06:42:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42898 * 1 3 3 C 1.35949 * 117.00340 * 2 1 4 4 C 1.38084 * 119.99748 * 359.97438 * 3 2 1 5 5 C 1.39980 * 119.83559 * 180.02562 * 4 3 2 6 6 C 1.46961 * 120.07644 * 180.02562 * 5 4 3 7 7 C 1.35051 * 119.99706 * 226.91930 * 6 5 4 8 8 C 1.46215 * 119.99968 * 9.78616 * 7 6 5 9 9 O 1.21737 * 119.99924 * 29.18258 * 8 7 6 10 10 N 1.34780 * 119.99802 * 209.17566 * 8 7 6 11 11 C 1.46530 * 124.96286 * 185.98265 * 10 8 7 12 12 C 1.53749 * 105.18988 * 179.89440 * 11 10 8 13 13 C 1.51217 * 104.56430 * 0.35299 * 12 11 10 14 14 C 1.38171 * 130.98172 * 179.79633 * 13 12 11 15 15 C 1.38236 * 120.15332 * 179.97438 * 14 13 12 16 16 C 1.38301 * 119.82781 * 359.97363 * 15 14 13 17 17 C 1.37827 * 120.23302 * 0.02562 * 16 15 14 18 18 C 1.38587 * 108.54846 * 359.77398 * 13 12 11 19 19 C 1.40030 * 119.84452 * 359.97438 * 5 4 3 20 20 C 1.37639 * 120.00074 * 0.02723 * 19 5 4 21 21 C 1.39057 * 120.16392 * 359.97438 * 20 19 5 22 22 O 1.35612 * 119.92559 * 180.02562 * 21 20 19 23 23 C 1.34763 * 116.99805 * 354.74172 * 22 21 20 24 24 H 1.07999 * 120.00185 * 5.05426 * 23 22 21 25 25 C 1.38704 * 119.99839 * 185.05237 * 23 22 21 26 26 N 1.31515 * 120.00216 * 359.97438 * 25 23 22 27 27 Si 1.86799 * 119.99690 * 180.02562 * 25 23 22 28 28 H 1.48500 * 109.47328 * 60.00291 * 27 25 23 29 29 H 1.48507 * 109.47249 * 179.97438 * 27 25 23 30 30 H 1.48500 * 109.47260 * 299.99743 * 27 25 23 31 31 H 1.09000 * 109.46707 * 299.99638 * 1 2 3 32 32 H 1.08996 * 109.47295 * 59.99577 * 1 2 3 33 33 H 1.09003 * 109.47067 * 180.02562 * 1 2 3 34 34 H 1.07999 * 120.07898 * 359.97438 * 4 3 2 35 35 H 1.07999 * 120.00505 * 46.91664 * 6 5 4 36 36 H 1.08001 * 119.99915 * 189.78842 * 7 6 5 37 37 H 1.09001 * 110.29934 * 298.95090 * 11 10 8 38 38 H 1.08994 * 110.30466 * 61.09654 * 11 10 8 39 39 H 1.09002 * 110.61219 * 241.48691 * 12 11 10 40 40 H 1.09006 * 110.22734 * 119.02403 * 12 11 10 41 41 H 1.08004 * 119.92471 * 359.97438 * 14 13 12 42 42 H 1.07995 * 120.08328 * 180.02562 * 15 14 13 43 43 H 1.08004 * 119.87997 * 179.97438 * 16 15 14 44 44 H 1.07998 * 119.86498 * 179.97438 * 17 16 15 45 45 H 1.08005 * 120.00101 * 180.30169 * 19 5 4 46 46 H 1.08001 * 119.92327 * 179.97438 * 20 19 5 47 47 H 0.97004 * 120.00311 * 179.97438 * 26 25 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0462 1.2113 0.0000 4 6 1.2942 2.3694 -0.0005 5 6 1.9333 3.6147 -0.0011 6 6 1.1381 4.8506 -0.0011 7 6 1.4443 5.8505 -0.8557 8 6 2.4207 5.6283 -1.9211 9 8 2.5637 4.5154 -2.3932 10 7 3.1622 6.6557 -2.3806 11 6 4.0780 6.5857 -3.5224 12 6 4.6753 7.9969 -3.6468 13 6 4.0364 8.7808 -2.5225 14 6 4.1895 10.0983 -2.1353 15 6 3.4820 10.5912 -1.0548 16 6 2.6189 9.7621 -0.3616 17 6 2.4628 8.4472 -0.7441 18 6 3.1746 7.9416 -1.8343 19 6 3.3321 3.6802 -0.0005 20 6 4.0752 2.5217 0.0000 21 6 3.4406 1.2844 0.0005 22 8 4.1775 0.1460 0.0015 23 6 5.5138 0.2822 -0.1081 24 1 5.9580 1.2666 -0.1093 25 6 6.3186 -0.8419 -0.2192 26 7 5.7778 -2.0407 -0.2172 27 14 8.1709 -0.6532 -0.3704 28 1 8.6966 0.0472 0.8289 29 1 8.7985 -1.9951 -0.4740 30 1 8.4903 0.1383 -1.5856 31 1 -0.3633 0.5138 0.8900 32 1 -0.3634 0.5139 -0.8899 33 1 -0.3633 -1.0277 0.0005 34 1 0.2156 2.3143 -0.0014 35 1 0.3089 4.9593 0.6823 36 1 0.9679 6.8142 -0.7522 37 1 4.8645 5.8554 -3.3320 38 1 3.5322 6.3270 -4.4297 39 1 4.4205 8.4379 -4.6105 40 1 5.7572 7.9609 -3.5182 41 1 4.8636 10.7445 -2.6779 42 1 3.6022 11.6212 -0.7534 43 1 2.0660 10.1462 0.4829 44 1 1.7876 7.8049 -0.1983 45 1 3.8278 4.6398 0.0040 46 1 5.1540 2.5736 0.0000 47 1 6.3407 -2.8269 -0.2953 RHF calculation, no. of doubly occupied orbitals= 67 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000035386607.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:42:56 Heat of formation + Delta-G solvation = 7.107880 kcal Electronic energy + Delta-G solvation = -32117.803797 eV Core-core repulsion = 27812.454641 eV Total energy + Delta-G solvation = -4305.349156 eV No. of doubly occupied orbitals = 67 Molecular weight (most abundant/longest-lived isotopes) = 365.146 amu Computer time = 5.86 seconds Orbital eigenvalues (eV) -41.24965 -39.62802 -38.75996 -37.50678 -36.65815 -35.86842 -33.53437 -32.59792 -32.02394 -29.83932 -29.56312 -29.33471 -28.52330 -26.52865 -25.45360 -24.52428 -23.35239 -22.41975 -21.58002 -21.43416 -20.59177 -19.28962 -18.03103 -17.83410 -16.83842 -16.48364 -16.46180 -16.10171 -15.80682 -15.29893 -15.10253 -14.64779 -14.63574 -14.43675 -14.30527 -14.06734 -13.79679 -13.43834 -13.39897 -13.21977 -13.02329 -12.86606 -12.76937 -12.39021 -12.19331 -12.00318 -11.74516 -11.70594 -11.47473 -11.40490 -11.13332 -10.96248 -10.90497 -10.62792 -10.53173 -10.38917 -10.33743 -9.76240 -9.44373 -9.30566 -9.02958 -8.75245 -7.91039 -7.80031 -6.79037 -6.45509 -3.98753 0.95533 1.13619 1.37705 2.25458 2.45947 2.76246 3.13044 3.14439 3.17362 3.25982 3.65520 3.95675 4.05696 4.21183 4.30511 4.53056 4.66650 4.73054 4.88709 4.90356 4.99821 5.06305 5.16715 5.20617 5.23178 5.29028 5.46175 5.51268 5.53218 5.60379 5.62860 5.68325 5.69921 5.72712 5.77702 5.88312 5.97209 6.10932 6.17998 6.22594 6.28868 6.33545 6.37996 6.50512 6.63648 6.74493 6.94975 7.07415 7.22973 7.33990 7.44492 7.62370 7.95311 8.16917 8.21313 8.98258 9.69487 10.71299 Molecular weight = 365.15amu Principal moments of inertia in cm(-1) A = 0.009906 B = 0.002804 C = 0.002344 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2825.864502 B = 9984.441517 C =11940.338781 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.032 3.968 2 O -0.303 6.303 3 C 0.052 3.948 4 C -0.137 4.137 5 C -0.151 4.151 6 C 0.024 3.976 7 C -0.267 4.267 8 C 0.559 3.441 9 O -0.488 6.488 10 N -0.557 5.557 11 C 0.105 3.895 12 C -0.085 4.085 13 C -0.144 4.144 14 C -0.073 4.073 15 C -0.153 4.153 16 C -0.086 4.086 17 C -0.166 4.166 18 C 0.162 3.838 19 C -0.051 4.051 20 C -0.215 4.215 21 C 0.148 3.852 22 O -0.155 6.155 23 C -0.390 4.390 24 H 0.093 0.907 25 C 0.041 3.959 26 N -0.852 5.852 27 Si 0.941 3.059 28 H -0.269 1.269 29 H -0.277 1.277 30 H -0.269 1.269 31 H 0.045 0.955 32 H 0.045 0.955 33 H 0.090 0.910 34 H 0.120 0.880 35 H 0.128 0.872 36 H 0.142 0.858 37 H 0.085 0.915 38 H 0.081 0.919 39 H 0.089 0.911 40 H 0.090 0.910 41 H 0.123 0.877 42 H 0.124 0.876 43 H 0.127 0.873 44 H 0.142 0.858 45 H 0.099 0.901 46 H 0.133 0.867 47 H 0.272 0.728 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.122 23.144 -2.126 24.308 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.064 4.064 2 O -0.217 6.217 3 C 0.007 3.993 4 C -0.156 4.156 5 C -0.152 4.152 6 C 0.004 3.996 7 C -0.287 4.287 8 C 0.351 3.649 9 O -0.361 6.361 10 N -0.281 5.281 11 C -0.016 4.016 12 C -0.123 4.123 13 C -0.147 4.147 14 C -0.092 4.092 15 C -0.172 4.172 16 C -0.105 4.105 17 C -0.186 4.186 18 C 0.065 3.935 19 C -0.069 4.069 20 C -0.234 4.234 21 C 0.092 3.908 22 O -0.058 6.058 23 C -0.466 4.466 24 H 0.110 0.890 25 C -0.165 4.165 26 N -0.486 5.486 27 Si 0.766 3.234 28 H -0.194 1.194 29 H -0.202 1.202 30 H -0.194 1.194 31 H 0.064 0.936 32 H 0.064 0.936 33 H 0.109 0.891 34 H 0.137 0.863 35 H 0.146 0.854 36 H 0.159 0.841 37 H 0.103 0.897 38 H 0.099 0.901 39 H 0.107 0.893 40 H 0.108 0.892 41 H 0.141 0.859 42 H 0.142 0.858 43 H 0.145 0.855 44 H 0.159 0.841 45 H 0.117 0.883 46 H 0.150 0.850 47 H 0.082 0.918 Dipole moment (debyes) X Y Z Total from point charges -6.972 21.572 -2.422 22.800 hybrid contribution 0.699 0.458 -0.131 0.846 sum -6.273 22.030 -2.553 23.048 Atomic orbital electron populations 1.22879 0.80479 1.02867 1.00209 1.86230 1.19327 1.26352 1.89839 1.17977 0.89364 0.84430 1.07542 1.20639 0.98156 0.90745 1.06064 1.18072 0.92724 0.91486 1.12921 1.22307 0.93678 0.90646 0.92935 1.23040 1.04762 1.01085 0.99830 1.18389 0.80197 0.82869 0.83422 1.90981 1.65806 1.21429 1.57874 1.46063 1.42258 1.08819 1.30962 1.22016 0.93060 0.97695 0.88875 1.21124 1.00862 0.92750 0.97528 1.20054 1.00911 0.94399 0.99386 1.20378 0.98910 0.93219 0.96677 1.20981 0.99032 1.00035 0.97125 1.20895 0.97727 0.92792 0.99069 1.21222 1.02939 0.96745 0.97718 1.18401 0.96053 0.84661 0.94379 1.20596 0.92043 0.96727 0.97569 1.20722 1.00369 0.90822 1.11515 1.18783 0.88272 0.87590 0.96109 1.83994 1.19442 1.25535 1.76780 1.21372 0.78519 0.94814 1.51922 0.88996 1.25329 1.00548 0.94193 0.96399 1.70039 1.36393 0.97684 1.44467 0.85777 0.80339 0.78026 0.79287 1.19393 1.20174 1.19393 0.93649 0.93594 0.89117 0.86251 0.85409 0.84113 0.89682 0.90118 0.89267 0.89192 0.85915 0.85806 0.85519 0.84080 0.88291 0.84965 0.91829 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.50 9.81 101.05 0.99 1.49 16 2 O -0.30 -6.91 10.28 -34.19 -0.35 -7.26 16 3 C 0.05 1.20 6.70 -39.12 -0.26 0.94 16 4 C -0.14 -2.65 8.77 -38.99 -0.34 -2.99 16 5 C -0.15 -2.80 4.36 -105.04 -0.46 -3.26 16 6 C 0.02 0.33 9.76 -37.18 -0.36 -0.03 16 7 C -0.27 -3.58 8.04 -37.51 -0.30 -3.88 16 8 C 0.56 9.08 6.07 -13.06 -0.08 9.00 16 9 O -0.49 -9.99 14.40 5.16 0.07 -9.92 16 10 N -0.56 -7.71 3.13 -114.51 -0.36 -8.07 16 11 C 0.11 1.25 7.07 -3.64 -0.03 1.22 16 12 C -0.09 -0.76 6.94 -27.24 -0.19 -0.95 16 13 C -0.14 -1.49 6.23 -104.26 -0.65 -2.14 16 14 C -0.07 -0.63 10.04 -39.61 -0.40 -1.02 16 15 C -0.15 -1.22 10.06 -39.56 -0.40 -1.61 16 16 C -0.09 -0.73 10.02 -39.71 -0.40 -1.13 16 17 C -0.17 -1.71 8.95 -39.20 -0.35 -2.06 16 18 C 0.16 1.94 6.58 -83.60 -0.55 1.39 16 19 C -0.05 -1.03 7.43 -39.13 -0.29 -1.32 16 20 C -0.21 -5.02 9.14 -39.50 -0.36 -5.38 16 21 C 0.15 3.85 6.67 -38.76 -0.26 3.59 16 22 O -0.16 -4.67 9.52 -13.95 -0.13 -4.80 16 23 C -0.39 -11.26 9.48 30.90 0.29 -10.96 16 24 H 0.09 2.44 5.18 -52.49 -0.27 2.17 16 25 C 0.04 1.15 5.49 -17.52 -0.10 1.05 16 26 N -0.85 -25.55 13.67 55.48 0.76 -24.79 16 27 Si 0.94 20.85 29.55 -169.99 -5.02 15.83 16 28 H -0.27 -5.73 7.11 56.52 0.40 -5.33 16 29 H -0.28 -5.96 7.11 56.52 0.40 -5.56 16 30 H -0.27 -5.79 7.11 56.52 0.40 -5.39 16 31 H 0.04 0.62 7.66 -51.93 -0.40 0.22 16 32 H 0.05 0.66 7.66 -51.93 -0.40 0.26 16 33 H 0.09 1.22 8.14 -51.93 -0.42 0.80 16 34 H 0.12 1.91 6.28 -52.49 -0.33 1.58 16 35 H 0.13 1.32 8.06 -52.49 -0.42 0.90 16 36 H 0.14 1.44 5.15 -52.49 -0.27 1.17 16 37 H 0.08 1.07 8.14 -51.93 -0.42 0.65 16 38 H 0.08 0.91 8.14 -51.93 -0.42 0.49 16 39 H 0.09 0.63 8.14 -51.93 -0.42 0.20 16 40 H 0.09 0.69 8.14 -51.93 -0.42 0.27 16 41 H 0.12 0.77 8.06 -52.48 -0.42 0.35 16 42 H 0.12 0.70 8.06 -52.49 -0.42 0.27 16 43 H 0.13 0.76 8.06 -52.48 -0.42 0.34 16 44 H 0.14 1.33 4.39 -52.49 -0.23 1.10 16 45 H 0.10 1.86 7.34 -52.48 -0.39 1.47 16 46 H 0.13 3.05 5.61 -52.49 -0.29 2.76 16 47 H 0.27 7.44 8.31 -40.82 -0.34 7.10 16 LS Contribution 389.98 15.07 5.88 5.88 Total: -1.00 -36.21 389.98 -9.16 -45.37 By element: Atomic # 1 Polarization: 11.34 SS G_CDS: -5.52 Total: 5.83 kcal Atomic # 6 Polarization: -13.57 SS G_CDS: -4.49 Total: -18.06 kcal Atomic # 7 Polarization: -33.26 SS G_CDS: 0.40 Total: -32.86 kcal Atomic # 8 Polarization: -21.57 SS G_CDS: -0.41 Total: -21.98 kcal Atomic # 14 Polarization: 20.85 SS G_CDS: -5.02 Total: 15.83 kcal Total LS contribution 5.88 Total: 5.88 kcal Total: -36.21 -9.16 -45.37 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000035386607.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 52.479 kcal (2) G-P(sol) polarization free energy of solvation -36.213 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 16.266 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.159 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.371 kcal (6) G-S(sol) free energy of system = (1) + (5) 7.108 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 5.86 seconds