Wall clock time and date at job start Tue Mar 31 2020 06:42:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42898 * 1 3 3 C 1.35949 * 117.00340 * 2 1 4 4 C 1.38084 * 119.99748 * 359.97438 * 3 2 1 5 5 C 1.39980 * 119.83559 * 180.02562 * 4 3 2 6 6 C 1.46961 * 120.07644 * 180.02562 * 5 4 3 7 7 C 1.35051 * 119.99706 * 226.91930 * 6 5 4 8 8 C 1.46215 * 119.99968 * 9.78616 * 7 6 5 9 9 O 1.21737 * 119.99924 * 29.18258 * 8 7 6 10 10 N 1.34780 * 119.99802 * 209.17566 * 8 7 6 11 11 C 1.46530 * 124.96286 * 185.98265 * 10 8 7 12 12 C 1.53749 * 105.18988 * 179.89440 * 11 10 8 13 13 C 1.51217 * 104.56430 * 0.35299 * 12 11 10 14 14 C 1.38171 * 130.98172 * 179.79633 * 13 12 11 15 15 C 1.38236 * 120.15332 * 179.97438 * 14 13 12 16 16 C 1.38301 * 119.82781 * 359.97363 * 15 14 13 17 17 C 1.37827 * 120.23302 * 0.02562 * 16 15 14 18 18 C 1.38587 * 108.54846 * 359.77398 * 13 12 11 19 19 C 1.40030 * 119.84452 * 359.97438 * 5 4 3 20 20 C 1.37639 * 120.00074 * 0.02723 * 19 5 4 21 21 C 1.39057 * 120.16392 * 359.97438 * 20 19 5 22 22 O 1.35612 * 119.92559 * 180.02562 * 21 20 19 23 23 C 1.34763 * 116.99805 * 354.74172 * 22 21 20 24 24 H 1.07999 * 120.00185 * 5.05426 * 23 22 21 25 25 C 1.38704 * 119.99839 * 185.05237 * 23 22 21 26 26 N 1.31515 * 120.00216 * 359.97438 * 25 23 22 27 27 Si 1.86799 * 119.99690 * 180.02562 * 25 23 22 28 28 H 1.48500 * 109.47328 * 60.00291 * 27 25 23 29 29 H 1.48507 * 109.47249 * 179.97438 * 27 25 23 30 30 H 1.48500 * 109.47260 * 299.99743 * 27 25 23 31 31 H 1.09000 * 109.46707 * 299.99638 * 1 2 3 32 32 H 1.08996 * 109.47295 * 59.99577 * 1 2 3 33 33 H 1.09003 * 109.47067 * 180.02562 * 1 2 3 34 34 H 1.07999 * 120.07898 * 359.97438 * 4 3 2 35 35 H 1.07999 * 120.00505 * 46.91664 * 6 5 4 36 36 H 1.08001 * 119.99915 * 189.78842 * 7 6 5 37 37 H 1.09001 * 110.29934 * 298.95090 * 11 10 8 38 38 H 1.08994 * 110.30466 * 61.09654 * 11 10 8 39 39 H 1.09002 * 110.61219 * 241.48691 * 12 11 10 40 40 H 1.09006 * 110.22734 * 119.02403 * 12 11 10 41 41 H 1.08004 * 119.92471 * 359.97438 * 14 13 12 42 42 H 1.07995 * 120.08328 * 180.02562 * 15 14 13 43 43 H 1.08004 * 119.87997 * 179.97438 * 16 15 14 44 44 H 1.07998 * 119.86498 * 179.97438 * 17 16 15 45 45 H 1.08005 * 120.00101 * 180.30169 * 19 5 4 46 46 H 1.08001 * 119.92327 * 179.97438 * 20 19 5 47 47 H 0.97004 * 120.00311 * 179.97438 * 26 25 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0462 1.2113 0.0000 4 6 1.2942 2.3694 -0.0005 5 6 1.9333 3.6147 -0.0011 6 6 1.1381 4.8506 -0.0011 7 6 1.4443 5.8505 -0.8557 8 6 2.4207 5.6283 -1.9211 9 8 2.5637 4.5154 -2.3932 10 7 3.1622 6.6557 -2.3806 11 6 4.0780 6.5857 -3.5224 12 6 4.6753 7.9969 -3.6468 13 6 4.0364 8.7808 -2.5225 14 6 4.1895 10.0983 -2.1353 15 6 3.4820 10.5912 -1.0548 16 6 2.6189 9.7621 -0.3616 17 6 2.4628 8.4472 -0.7441 18 6 3.1746 7.9416 -1.8343 19 6 3.3321 3.6802 -0.0005 20 6 4.0752 2.5217 0.0000 21 6 3.4406 1.2844 0.0005 22 8 4.1775 0.1460 0.0015 23 6 5.5138 0.2822 -0.1081 24 1 5.9580 1.2666 -0.1093 25 6 6.3186 -0.8419 -0.2192 26 7 5.7778 -2.0407 -0.2172 27 14 8.1709 -0.6532 -0.3704 28 1 8.6966 0.0472 0.8289 29 1 8.7985 -1.9951 -0.4740 30 1 8.4903 0.1383 -1.5856 31 1 -0.3633 0.5138 0.8900 32 1 -0.3634 0.5139 -0.8899 33 1 -0.3633 -1.0277 0.0005 34 1 0.2156 2.3143 -0.0014 35 1 0.3089 4.9593 0.6823 36 1 0.9679 6.8142 -0.7522 37 1 4.8645 5.8554 -3.3320 38 1 3.5322 6.3270 -4.4297 39 1 4.4205 8.4379 -4.6105 40 1 5.7572 7.9609 -3.5182 41 1 4.8636 10.7445 -2.6779 42 1 3.6022 11.6212 -0.7534 43 1 2.0660 10.1462 0.4829 44 1 1.7876 7.8049 -0.1983 45 1 3.8278 4.6398 0.0040 46 1 5.1540 2.5736 0.0000 47 1 6.3407 -2.8269 -0.2953 RHF calculation, no. of doubly occupied orbitals= 67 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000035386607.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:42:51 Heat of formation + Delta-G solvation = -15.355391 kcal Electronic energy + Delta-G solvation = -32118.777877 eV Core-core repulsion = 27812.454641 eV Total energy + Delta-G solvation = -4306.323236 eV No. of doubly occupied orbitals = 67 Molecular weight (most abundant/longest-lived isotopes) = 365.146 amu Computer time = 1.40 seconds Orbital eigenvalues (eV) -42.20391 -41.28235 -39.92442 -39.29705 -37.97437 -37.04539 -34.82468 -34.25819 -33.36434 -31.22875 -30.63230 -30.31133 -29.87221 -27.91552 -27.40720 -25.74763 -24.12780 -23.63854 -23.28679 -22.42086 -21.71801 -20.44137 -19.93100 -19.32648 -18.27493 -17.86630 -17.41006 -17.16324 -16.98306 -16.70017 -16.58394 -16.36914 -15.76394 -15.64922 -15.53467 -15.27783 -15.25427 -15.10203 -14.94104 -14.29309 -14.15742 -13.90670 -13.66987 -13.63864 -13.54237 -13.16659 -13.10792 -12.92975 -12.86122 -12.77927 -12.60681 -12.37561 -12.21979 -12.04789 -11.94996 -11.61384 -11.43523 -11.24234 -11.07994 -10.87998 -10.47666 -9.70540 -9.50426 -8.74426 -8.56499 -8.49081 -6.14565 -0.18033 0.38332 0.46361 0.54360 0.96005 1.30062 1.42369 1.47547 1.77352 2.10862 2.14631 2.54337 2.77306 2.90219 3.08162 3.35364 3.38607 3.53262 3.70640 3.80921 3.99190 4.05485 4.06528 4.11220 4.27352 4.29679 4.36537 4.42086 4.46090 4.50474 4.54476 4.61660 4.67081 4.67568 4.69112 4.88622 4.90723 4.92297 4.96278 5.04413 5.10316 5.17739 5.26599 5.37969 5.44673 5.53831 5.55942 5.66846 5.68001 5.90508 5.96790 6.05739 6.43477 6.61075 6.93322 6.98195 7.75363 8.73383 Molecular weight = 365.15amu Principal moments of inertia in cm(-1) A = 0.009906 B = 0.002804 C = 0.002344 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2825.864502 B = 9984.441517 C =11940.338781 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.020 3.980 2 O -0.345 6.345 3 C 0.041 3.959 4 C -0.134 4.134 5 C -0.116 4.116 6 C 0.011 3.989 7 C -0.239 4.239 8 C 0.544 3.456 9 O -0.548 6.548 10 N -0.559 5.559 11 C 0.095 3.905 12 C -0.076 4.076 13 C -0.151 4.151 14 C -0.079 4.079 15 C -0.145 4.145 16 C -0.089 4.089 17 C -0.172 4.172 18 C 0.121 3.879 19 C -0.064 4.064 20 C -0.216 4.216 21 C 0.094 3.906 22 O -0.216 6.216 23 C -0.418 4.418 24 H 0.097 0.903 25 C -0.021 4.021 26 N -0.916 5.916 27 Si 1.019 2.981 28 H -0.254 1.254 29 H -0.267 1.267 30 H -0.260 1.260 31 H 0.072 0.928 32 H 0.061 0.939 33 H 0.109 0.891 34 H 0.164 0.836 35 H 0.184 0.816 36 H 0.183 0.817 37 H 0.065 0.935 38 H 0.079 0.921 39 H 0.111 0.889 40 H 0.101 0.899 41 H 0.147 0.853 42 H 0.153 0.847 43 H 0.155 0.845 44 H 0.149 0.851 45 H 0.113 0.887 46 H 0.121 0.879 47 H 0.274 0.726 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.970 28.845 -1.545 30.247 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.074 4.074 2 O -0.260 6.260 3 C -0.004 4.004 4 C -0.153 4.153 5 C -0.117 4.117 6 C -0.008 4.008 7 C -0.259 4.259 8 C 0.338 3.662 9 O -0.426 6.426 10 N -0.282 5.282 11 C -0.026 4.026 12 C -0.113 4.113 13 C -0.154 4.154 14 C -0.097 4.097 15 C -0.164 4.164 16 C -0.107 4.107 17 C -0.192 4.192 18 C 0.026 3.974 19 C -0.083 4.083 20 C -0.235 4.235 21 C 0.043 3.957 22 O -0.122 6.122 23 C -0.494 4.494 24 H 0.115 0.885 25 C -0.219 4.219 26 N -0.553 5.553 27 Si 0.838 3.162 28 H -0.178 1.178 29 H -0.191 1.191 30 H -0.184 1.184 31 H 0.090 0.910 32 H 0.080 0.920 33 H 0.128 0.872 34 H 0.181 0.819 35 H 0.201 0.799 36 H 0.200 0.800 37 H 0.084 0.916 38 H 0.097 0.903 39 H 0.129 0.871 40 H 0.119 0.881 41 H 0.165 0.835 42 H 0.170 0.830 43 H 0.173 0.827 44 H 0.166 0.834 45 H 0.131 0.869 46 H 0.138 0.862 47 H 0.083 0.917 Dipole moment (debyes) X Y Z Total from point charges -8.864 27.405 -1.829 28.861 hybrid contribution 0.913 -0.733 -0.373 1.229 sum -7.951 26.672 -2.202 27.919 Atomic orbital electron populations 1.23284 0.76993 1.04991 1.02130 1.86178 1.23112 1.26785 1.89912 1.18343 0.88884 0.86006 1.07148 1.21129 1.00109 0.89528 1.04542 1.18697 0.92476 0.93580 1.06946 1.22623 0.94875 0.88107 0.95214 1.23440 1.02495 1.02219 0.97713 1.19005 0.80743 0.82580 0.83869 1.90969 1.67867 1.23643 1.60094 1.46037 1.41696 1.09306 1.31132 1.22140 0.92574 0.99433 0.88496 1.21122 1.01218 0.90548 0.98456 1.20320 1.00562 0.95099 0.99397 1.20735 0.99235 0.92673 0.97051 1.21433 0.97565 1.01317 0.96053 1.21277 0.97727 0.91984 0.99700 1.21419 1.02815 0.97785 0.97174 1.18722 0.98450 0.83972 0.96248 1.20753 0.93237 0.96007 0.98258 1.20816 1.00236 0.91422 1.11032 1.19423 0.89852 0.87686 0.98752 1.83963 1.19871 1.27468 1.80902 1.21814 0.79103 0.95538 1.52964 0.88535 1.26644 1.06145 0.93447 0.95680 1.70192 1.38510 0.98692 1.47912 0.84660 0.73120 0.78546 0.79902 1.17820 1.19086 1.18429 0.90964 0.92038 0.87231 0.81913 0.79923 0.80042 0.91640 0.90252 0.87098 0.88056 0.83530 0.82973 0.82707 0.83359 0.86882 0.86178 0.91699 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.62 9.81 113.37 1.11 1.73 16 2 O -0.34 -16.37 10.28 -79.00 -0.81 -17.19 16 3 C 0.04 1.99 6.70 22.57 0.15 2.14 16 4 C -0.13 -5.03 8.77 22.66 0.20 -4.83 16 5 C -0.12 -4.10 4.36 -20.14 -0.09 -4.19 16 6 C 0.01 0.25 9.76 23.82 0.23 0.48 16 7 C -0.24 -5.49 8.04 23.61 0.19 -5.30 16 8 C 0.54 17.07 6.07 86.31 0.52 17.59 16 9 O -0.55 -22.80 14.40 -4.47 -0.06 -22.86 16 10 N -0.56 -14.92 3.13 -634.41 -1.98 -16.90 16 11 C 0.10 2.28 7.07 86.63 0.61 2.89 16 12 C -0.08 -1.23 6.94 30.26 0.21 -1.02 16 13 C -0.15 -2.69 6.23 -19.63 -0.12 -2.82 16 14 C -0.08 -1.03 10.04 22.25 0.22 -0.80 16 15 C -0.14 -1.60 10.06 22.28 0.22 -1.37 16 16 C -0.09 -1.06 10.02 22.19 0.22 -0.84 16 17 C -0.17 -2.87 8.95 22.52 0.20 -2.67 16 18 C 0.12 2.60 6.58 38.31 0.25 2.85 16 19 C -0.06 -2.64 7.43 22.56 0.17 -2.47 16 20 C -0.22 -10.77 9.14 22.32 0.20 -10.56 16 21 C 0.09 5.27 6.67 22.80 0.15 5.43 16 22 O -0.22 -14.25 9.52 -6.57 -0.06 -14.31 16 23 C -0.42 -26.31 9.48 67.93 0.64 -25.67 16 24 H 0.10 5.63 5.18 -2.91 -0.02 5.62 16 25 C -0.02 -1.28 5.49 84.85 0.47 -0.81 16 26 N -0.92 -59.32 13.67 21.62 0.30 -59.02 16 27 Si 1.02 45.32 29.55 68.60 2.03 47.35 16 28 H -0.25 -10.51 7.11 99.48 0.71 -9.80 16 29 H -0.27 -11.21 7.11 99.48 0.71 -10.51 16 30 H -0.26 -10.97 7.11 99.48 0.71 -10.27 16 31 H 0.07 1.79 7.66 -2.39 -0.02 1.77 16 32 H 0.06 1.66 7.66 -2.39 -0.02 1.64 16 33 H 0.11 2.86 8.14 -2.39 -0.02 2.84 16 34 H 0.16 4.57 6.28 -2.91 -0.02 4.55 16 35 H 0.18 2.46 8.06 -2.91 -0.02 2.43 16 36 H 0.18 2.72 5.15 -2.91 -0.01 2.71 16 37 H 0.07 1.77 8.14 -2.39 -0.02 1.75 16 38 H 0.08 1.85 8.14 -2.39 -0.02 1.83 16 39 H 0.11 1.29 8.14 -2.39 -0.02 1.27 16 40 H 0.10 1.39 8.14 -2.38 -0.02 1.37 16 41 H 0.15 1.17 8.06 -2.91 -0.02 1.15 16 42 H 0.15 0.83 8.06 -2.91 -0.02 0.81 16 43 H 0.16 0.97 8.06 -2.91 -0.02 0.94 16 44 H 0.15 2.07 4.39 -2.91 -0.01 2.05 16 45 H 0.11 4.25 7.34 -2.91 -0.02 4.23 16 46 H 0.12 6.08 5.61 -2.91 -0.02 6.07 16 47 H 0.27 16.16 8.31 -92.71 -0.77 15.39 16 Total: -1.00 -91.56 389.98 6.20 -85.36 By element: Atomic # 1 Polarization: 26.80 SS G_CDS: 1.02 Total: 27.83 kcal Atomic # 6 Polarization: -36.03 SS G_CDS: 5.78 Total: -30.25 kcal Atomic # 7 Polarization: -74.24 SS G_CDS: -1.69 Total: -75.93 kcal Atomic # 8 Polarization: -53.42 SS G_CDS: -0.94 Total: -54.36 kcal Atomic # 14 Polarization: 45.32 SS G_CDS: 2.03 Total: 47.35 kcal Total: -91.56 6.20 -85.36 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000035386607.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 70.004 kcal (2) G-P(sol) polarization free energy of solvation -91.563 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -21.558 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.203 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -85.360 kcal (6) G-S(sol) free energy of system = (1) + (5) -15.355 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.41 seconds