Wall clock time and date at job start Tue Mar 31 2020 05:06:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.52998 * 109.46937 * 2 1 4 4 N 1.46497 * 109.47414 * 180.02562 * 3 2 1 5 5 C 1.37802 * 119.69894 * 270.00015 * 4 3 2 6 6 N 1.32578 * 122.46589 * 359.95608 * 5 4 3 7 7 C 1.32028 * 120.50950 * 180.02562 * 6 5 4 8 8 C 1.50697 * 118.59500 * 179.97438 * 7 6 5 9 9 C 1.52998 * 109.47460 * 119.99819 * 8 7 6 10 10 C 1.53004 * 109.47412 * 239.99878 * 8 7 6 11 11 N 1.31746 * 122.81172 * 359.97438 * 7 6 5 12 12 C 1.33420 * 121.11050 * 0.26486 * 11 7 6 13 13 S 1.76201 * 120.99566 * 179.73128 * 12 11 7 14 14 C 1.76202 * 99.99541 * 359.76043 * 13 12 11 15 15 H 1.08002 * 120.00263 * 359.97438 * 14 13 12 16 16 C 1.38873 * 120.00032 * 180.02562 * 14 13 12 17 17 N 1.31497 * 119.99820 * 359.97438 * 16 14 13 18 18 Si 1.86803 * 120.00370 * 179.97438 * 16 14 13 19 19 H 1.48494 * 109.46962 * 89.99556 * 18 16 14 20 20 H 1.48505 * 109.47072 * 209.99736 * 18 16 14 21 21 H 1.48494 * 109.46761 * 329.99516 * 18 16 14 22 22 C 1.40322 * 118.01840 * 359.49866 * 12 11 7 23 23 C 1.46646 * 122.70595 * 180.21324 * 22 12 11 24 24 O 1.21648 * 120.96296 * 0.30125 * 23 22 12 25 25 N 1.35216 * 118.06818 * 180.27873 * 23 22 12 26 26 C 1.46494 * 119.42645 * 179.97438 * 25 23 22 27 27 C 1.34240 * 121.14172 * 0.02562 * 25 23 22 28 28 O 1.21563 * 118.54393 * 179.97438 * 27 25 23 29 29 H 1.09004 * 109.46821 * 180.02562 * 1 2 3 30 30 H 1.09002 * 109.46937 * 299.99445 * 1 2 3 31 31 H 1.08996 * 109.47701 * 59.99906 * 1 2 3 32 32 H 1.09002 * 109.46937 * 240.00554 * 2 1 3 33 33 H 1.08996 * 109.47701 * 120.00094 * 2 1 3 34 34 H 1.08998 * 109.47545 * 60.00318 * 3 2 1 35 35 H 1.09006 * 109.47429 * 300.00222 * 3 2 1 36 36 H 1.09005 * 109.46924 * 359.97438 * 8 7 6 37 37 H 1.08996 * 109.47172 * 59.99805 * 9 8 7 38 38 H 1.08994 * 109.47350 * 180.02562 * 9 8 7 39 39 H 1.08997 * 109.47206 * 300.00153 * 9 8 7 40 40 H 1.08996 * 109.47202 * 300.00178 * 10 8 7 41 41 H 1.09011 * 109.46655 * 59.99789 * 10 8 7 42 42 H 1.08994 * 109.47115 * 179.97438 * 10 8 7 43 43 H 0.97000 * 120.00122 * 180.02562 * 17 16 14 44 44 H 1.09007 * 109.47390 * 0.02562 * 26 25 23 45 45 H 1.09002 * 109.47187 * 119.99887 * 26 25 23 46 46 H 1.08993 * 109.47709 * 240.00142 * 26 25 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 7 3.5049 1.4426 -0.0006 5 6 4.1882 1.4425 1.1961 6 7 3.5696 1.4431 2.3687 7 6 4.2630 1.4435 3.4923 8 6 3.5158 1.4448 4.8010 9 6 3.8884 0.1959 5.6024 10 6 3.8899 2.6943 5.6007 11 7 5.5802 1.4427 3.5183 12 6 6.2920 1.4469 2.3899 13 16 8.0536 1.4530 2.4282 14 6 8.3216 1.4586 4.1698 15 1 7.4793 1.4580 4.8458 16 6 9.6158 1.4649 4.6732 17 7 10.6414 1.4662 3.8501 18 14 9.9000 1.4717 6.5194 19 1 9.9803 0.0734 7.0129 20 1 11.1712 2.1773 6.8220 21 1 8.7744 2.1697 7.1909 22 6 5.5960 1.4412 1.1715 23 6 6.2744 1.4403 -0.1286 24 8 7.4887 1.4392 -0.2009 25 7 5.5110 1.4405 -1.2446 26 6 6.1577 1.4402 -2.5591 27 6 4.1707 1.4418 -1.1689 28 8 3.5305 1.4424 -2.2023 29 1 -0.3633 -1.0277 0.0005 30 1 -0.3633 0.5138 0.8901 31 1 -0.3634 0.5138 -0.8899 32 1 1.8933 -0.5138 -0.8901 33 1 1.8935 -0.5138 0.8899 34 1 1.6767 1.9564 0.8900 35 1 1.6766 1.9564 -0.8900 36 1 2.4431 1.4457 4.6069 37 1 4.9610 0.1953 5.7964 38 1 3.3476 0.1966 6.5487 39 1 3.6219 -0.6943 5.0327 40 1 4.9625 2.6939 5.7948 41 1 3.6244 3.5842 5.0297 42 1 3.3491 2.6955 6.5470 43 1 11.5454 1.4702 4.2017 44 1 7.2403 1.4395 -2.4315 45 1 5.8569 0.5503 -3.1119 46 1 5.8574 2.3302 -3.1120 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000036803160.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:06:16 Heat of formation + Delta-G solvation = -18.593689 kcal Electronic energy + Delta-G solvation = -31636.573570 eV Core-core repulsion = 27459.732181 eV Total energy + Delta-G solvation = -4176.841389 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 364.136 amu Computer time = 2.23 seconds Orbital eigenvalues (eV) -42.10785 -39.95672 -38.87883 -36.91185 -35.24848 -34.85216 -33.51634 -32.97421 -32.54671 -30.48265 -27.95814 -26.92916 -26.37500 -26.01915 -24.55752 -24.48737 -22.83021 -21.54659 -21.43698 -19.09083 -18.59578 -18.17417 -17.63301 -16.88187 -16.47789 -15.93137 -15.38409 -15.24212 -15.07950 -14.68940 -14.64171 -14.40525 -14.36203 -14.16146 -13.88007 -13.39832 -13.08992 -13.02139 -12.58467 -12.37041 -12.18521 -12.14715 -11.91880 -11.82098 -11.69340 -11.35204 -11.32685 -11.31001 -11.11713 -11.05636 -10.97046 -10.75147 -10.71050 -10.53008 -10.31965 -9.95272 -9.92335 -9.61358 -9.33349 -8.72572 -8.62105 -8.53053 -7.23933 -6.72442 -4.42956 0.88335 1.45169 2.00002 2.29722 2.72381 3.04374 3.04991 3.10405 3.17039 3.27351 3.80306 4.13160 4.21578 4.45016 4.68231 4.75152 4.88345 4.91300 5.00292 5.13796 5.19891 5.29724 5.34542 5.36743 5.42287 5.43892 5.52843 5.55513 5.62173 5.67336 5.69311 5.81110 5.84730 5.90222 5.94766 6.00041 6.10529 6.10687 6.14498 6.25980 6.35186 6.48244 6.60145 6.79465 7.32220 7.35907 7.53311 7.69824 8.13803 8.17705 8.66818 8.78608 10.31553 Molecular weight = 364.14amu Principal moments of inertia in cm(-1) A = 0.010359 B = 0.004120 C = 0.003057 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2702.428970 B = 6794.404696 C = 9156.120673 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C -0.137 4.137 3 C 0.123 3.877 4 N -0.524 5.524 5 C 0.458 3.542 6 N -0.593 5.593 7 C 0.386 3.614 8 C -0.022 4.022 9 C -0.140 4.140 10 C -0.140 4.140 11 N -0.524 5.524 12 C 0.162 3.838 13 S 0.293 5.707 14 C -0.571 4.571 15 H 0.115 0.885 16 C 0.080 3.920 17 N -0.857 5.857 18 Si 0.930 3.070 19 H -0.271 1.271 20 H -0.279 1.279 21 H -0.263 1.263 22 C -0.336 4.336 23 C 0.562 3.438 24 O -0.478 6.478 25 N -0.563 5.563 26 C 0.084 3.916 27 C 0.711 3.289 28 O -0.549 6.549 29 H 0.057 0.943 30 H 0.058 0.942 31 H 0.056 0.944 32 H 0.064 0.936 33 H 0.069 0.931 34 H 0.102 0.898 35 H 0.093 0.907 36 H 0.090 0.910 37 H 0.072 0.928 38 H 0.060 0.940 39 H 0.051 0.949 40 H 0.072 0.928 41 H 0.051 0.949 42 H 0.060 0.940 43 H 0.280 0.720 44 H 0.102 0.898 45 H 0.074 0.926 46 H 0.074 0.926 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.419 -0.585 -3.402 14.826 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.175 4.175 3 C 0.002 3.998 4 N -0.250 5.250 5 C 0.215 3.785 6 N -0.322 5.322 7 C 0.111 3.889 8 C -0.042 4.042 9 C -0.198 4.198 10 C -0.198 4.198 11 N -0.245 5.245 12 C -0.090 4.090 13 S 0.551 5.449 14 C -0.719 4.719 15 H 0.132 0.868 16 C -0.132 4.132 17 N -0.488 5.488 18 Si 0.755 3.245 19 H -0.196 1.196 20 H -0.205 1.205 21 H -0.187 1.187 22 C -0.360 4.360 23 C 0.355 3.645 24 O -0.352 6.352 25 N -0.308 5.308 26 C -0.057 4.057 27 C 0.413 3.587 28 O -0.423 6.423 29 H 0.076 0.924 30 H 0.077 0.923 31 H 0.075 0.925 32 H 0.083 0.917 33 H 0.088 0.912 34 H 0.120 0.880 35 H 0.111 0.889 36 H 0.108 0.892 37 H 0.091 0.909 38 H 0.079 0.921 39 H 0.070 0.930 40 H 0.091 0.909 41 H 0.070 0.930 42 H 0.079 0.921 43 H 0.091 0.909 44 H 0.120 0.880 45 H 0.092 0.908 46 H 0.093 0.907 Dipole moment (debyes) X Y Z Total from point charges -13.146 -0.571 -4.128 13.790 hybrid contribution -0.324 -0.036 1.137 1.182 sum -13.469 -0.607 -2.992 13.811 Atomic orbital electron populations 1.21635 0.94557 1.01979 1.02014 1.21819 0.96578 0.96328 1.02793 1.21789 0.74666 0.98675 1.04694 1.44557 1.08766 1.69307 1.02331 1.18186 0.86973 0.86682 0.86634 1.67712 1.39882 1.28415 0.96189 1.22988 0.87438 0.86184 0.92274 1.19905 0.98587 0.97243 0.88479 1.21787 1.03341 0.95786 0.98913 1.21794 1.03357 0.95779 0.98920 1.68808 1.06681 1.20920 1.28125 1.24557 1.04478 0.92154 0.87776 1.84517 0.84368 1.68023 1.08016 1.24122 0.96659 1.56930 0.94195 0.86757 1.25268 0.94575 0.92550 1.00779 1.69912 0.99684 1.43116 1.36128 0.85949 0.78280 0.78968 0.81303 1.19642 1.20455 1.18692 1.19861 0.92542 1.28985 0.94625 1.17988 0.87028 0.76456 0.83070 1.90836 1.11920 1.46771 1.85626 1.46109 1.05495 1.68720 1.10440 1.21831 0.99803 1.03277 0.80812 1.15454 0.81695 0.78024 0.83484 1.90950 1.65423 1.54907 1.30998 0.92423 0.92266 0.92531 0.91727 0.91225 0.88005 0.88880 0.89164 0.90863 0.92108 0.93008 0.90851 0.93002 0.92107 0.90947 0.87953 0.90755 0.90734 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.25 9.91 37.16 0.37 -0.88 16 2 C -0.14 -1.57 6.26 -26.73 -0.17 -1.73 16 3 C 0.12 1.55 5.12 -4.04 -0.02 1.53 16 4 N -0.52 -8.36 2.63 -120.89 -0.32 -8.68 16 5 C 0.46 8.31 7.37 -155.39 -1.15 7.17 16 6 N -0.59 -10.31 9.26 -9.89 -0.09 -10.40 16 7 C 0.39 6.95 6.34 -157.04 -1.00 5.95 16 8 C -0.02 -0.30 3.24 -91.77 -0.30 -0.60 16 9 C -0.14 -1.87 9.08 37.16 0.34 -1.53 16 10 C -0.14 -1.88 9.08 37.16 0.34 -1.54 16 11 N -0.52 -10.99 7.95 -9.24 -0.07 -11.06 16 12 C 0.16 3.62 7.04 -16.08 -0.11 3.50 16 13 S 0.29 7.23 19.10 -107.50 -2.05 5.18 16 14 C -0.57 -14.71 9.29 30.97 0.29 -14.42 16 15 H 0.11 2.91 6.60 -52.49 -0.35 2.56 16 16 C 0.08 2.04 5.49 -17.46 -0.10 1.94 16 17 N -0.86 -22.71 13.22 55.49 0.73 -21.97 16 18 Si 0.93 19.50 29.55 -169.99 -5.02 14.47 16 19 H -0.27 -5.59 7.11 56.52 0.40 -5.19 16 20 H -0.28 -5.74 7.11 56.52 0.40 -5.34 16 21 H -0.26 -5.40 7.11 56.52 0.40 -5.00 16 22 C -0.34 -6.86 5.90 -104.75 -0.62 -7.48 16 23 C 0.56 11.02 7.62 -12.67 -0.10 10.92 16 24 O -0.48 -10.25 13.76 5.23 0.07 -10.18 16 25 N -0.56 -9.44 2.96 -129.76 -0.38 -9.83 16 26 C 0.08 1.11 9.89 59.84 0.59 1.70 16 27 C 0.71 11.82 8.10 -87.67 -0.71 11.11 16 28 O -0.55 -9.32 15.57 5.31 0.08 -9.24 16 29 H 0.06 0.46 8.14 -51.93 -0.42 0.04 16 30 H 0.06 0.48 8.14 -51.93 -0.42 0.05 16 31 H 0.06 0.46 8.14 -51.93 -0.42 0.03 16 32 H 0.06 0.80 8.14 -51.93 -0.42 0.38 16 33 H 0.07 0.88 8.14 -51.93 -0.42 0.46 16 34 H 0.10 1.23 7.46 -51.93 -0.39 0.84 16 35 H 0.09 1.12 7.33 -51.93 -0.38 0.74 16 36 H 0.09 1.12 8.09 -51.93 -0.42 0.70 16 37 H 0.07 1.14 7.99 -51.93 -0.41 0.72 16 38 H 0.06 0.65 8.14 -51.93 -0.42 0.22 16 39 H 0.05 0.69 8.14 -51.93 -0.42 0.26 16 40 H 0.07 1.15 7.99 -51.93 -0.41 0.73 16 41 H 0.05 0.69 8.14 -51.92 -0.42 0.27 16 42 H 0.06 0.65 8.14 -51.93 -0.42 0.23 16 43 H 0.28 6.88 8.31 -40.82 -0.34 6.54 16 44 H 0.10 1.34 6.90 -51.93 -0.36 0.98 16 45 H 0.07 0.87 8.14 -51.93 -0.42 0.45 16 46 H 0.07 0.87 8.14 -51.93 -0.42 0.45 16 LS Contribution 395.28 15.07 5.96 5.96 Total: -1.00 -29.04 395.28 -9.94 -38.98 By element: Atomic # 1 Polarization: 7.64 SS G_CDS: -6.51 Total: 1.13 kcal Atomic # 6 Polarization: 17.98 SS G_CDS: -2.34 Total: 15.64 kcal Atomic # 7 Polarization: -61.81 SS G_CDS: -0.13 Total: -61.95 kcal Atomic # 8 Polarization: -19.57 SS G_CDS: 0.15 Total: -19.42 kcal Atomic # 14 Polarization: 19.50 SS G_CDS: -5.02 Total: 14.47 kcal Atomic # 16 Polarization: 7.23 SS G_CDS: -2.05 Total: 5.18 kcal Total LS contribution 5.96 Total: 5.96 kcal Total: -29.04 -9.94 -38.98 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000036803160.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 20.387 kcal (2) G-P(sol) polarization free energy of solvation -29.036 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -8.649 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.944 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.980 kcal (6) G-S(sol) free energy of system = (1) + (5) -18.594 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 2.24 seconds