Wall clock time and date at job start Tue Mar 31 2020 05:37:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30867 * 1 3 3 Si 1.86807 * 119.99865 * 2 1 4 4 H 1.48498 * 109.47275 * 180.02562 * 3 2 1 5 5 H 1.48499 * 109.46988 * 300.00384 * 3 2 1 6 6 H 1.48500 * 109.46933 * 60.00078 * 3 2 1 7 7 C 1.39902 * 120.00157 * 180.02562 * 2 1 3 8 8 H 1.08003 * 119.99488 * 196.83318 * 7 2 1 9 9 C 1.41152 * 119.99987 * 16.83598 * 7 2 1 10 10 C 1.40874 * 120.16033 * 205.34239 * 9 7 2 11 11 C 1.36377 * 119.82459 * 180.02562 * 10 9 7 12 12 C 1.39481 * 120.16904 * 0.02932 * 11 10 9 13 13 N 1.39239 * 119.83035 * 179.97438 * 12 11 10 14 14 C 1.34775 * 119.99991 * 145.60035 * 13 12 11 15 15 O 1.21281 * 119.99893 * 354.69959 * 14 13 12 16 16 C 1.50695 * 120.00033 * 174.96818 * 14 13 12 17 17 H 1.08997 * 109.50897 * 299.73132 * 16 14 13 18 18 C 1.53124 * 109.49978 * 59.80749 * 16 14 13 19 19 C 1.53117 * 109.16120 * 177.59560 * 18 16 14 20 20 C 1.53041 * 109.27750 * 302.34413 * 19 18 16 21 21 N 1.46848 * 109.52484 * 59.17905 * 20 19 18 22 22 C 1.46894 * 111.00253 * 174.16174 * 21 20 19 23 23 C 1.50706 * 109.47327 * 293.95623 * 22 21 20 24 24 C 1.38232 * 119.99443 * 269.72801 * 23 22 21 25 25 C 1.38237 * 119.99651 * 179.80973 * 24 23 22 26 26 C 1.38239 * 120.00104 * 0.38965 * 25 24 23 27 27 C 1.38232 * 119.99539 * 359.86502 * 26 25 24 28 28 C 1.38226 * 120.00196 * 89.99440 * 23 22 21 29 29 C 1.46844 * 111.23074 * 298.28024 * 21 20 19 30 30 C 1.39476 * 120.33453 * 0.24573 * 12 11 10 31 31 C 1.36380 * 120.16777 * 359.44310 * 30 12 11 32 32 H 0.97003 * 120.00551 * 0.02562 * 1 2 3 33 33 H 1.08002 * 120.08558 * 0.04181 * 10 9 7 34 34 H 1.07998 * 119.90938 * 179.97438 * 11 10 9 35 35 H 0.96999 * 120.00162 * 325.60013 * 13 12 11 36 36 H 1.08995 * 109.52336 * 297.49580 * 18 16 14 37 37 H 1.09002 * 109.52612 * 57.69128 * 18 16 14 38 38 H 1.08997 * 109.50408 * 62.28323 * 19 18 16 39 39 H 1.08997 * 109.50508 * 182.40259 * 19 18 16 40 40 H 1.09003 * 109.46359 * 179.19630 * 20 19 18 41 41 H 1.08999 * 109.45981 * 299.17261 * 20 19 18 42 42 H 1.09006 * 109.47038 * 53.95266 * 22 21 20 43 43 H 1.08998 * 109.47727 * 173.95175 * 22 21 20 44 44 H 1.07999 * 120.00298 * 359.97438 * 24 23 22 45 45 H 1.07997 * 120.00125 * 180.23206 * 25 24 23 46 46 H 1.08001 * 120.00166 * 179.83784 * 26 25 24 47 47 H 1.08001 * 119.99900 * 179.97438 * 27 26 25 48 48 H 1.08004 * 120.00456 * 359.97438 * 28 23 22 49 49 H 1.09009 * 109.43228 * 301.68402 * 29 21 20 50 50 H 1.08998 * 109.49913 * 181.72042 * 29 21 20 51 51 H 1.07996 * 119.91727 * 179.72871 * 30 12 11 52 52 H 1.08004 * 120.08716 * 180.29623 * 31 30 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3087 0.0000 0.0000 3 14 2.2427 1.6178 0.0000 4 1 3.7027 1.3465 -0.0006 5 1 1.8838 2.3965 -1.2124 6 1 1.8839 2.3965 1.2125 7 6 2.0082 -1.2116 -0.0005 8 1 3.0535 -1.2316 0.2703 9 6 1.3479 -2.4076 -0.3551 10 6 1.8189 -3.6454 0.1252 11 6 1.1759 -4.7968 -0.2221 12 6 0.0551 -4.7511 -1.0511 13 7 -0.5956 -5.9311 -1.4017 14 6 -1.9336 -5.9405 -1.5630 15 8 -2.5819 -4.9473 -1.3097 16 6 -2.6249 -7.1870 -2.0521 17 1 -2.2431 -7.4519 -3.0380 18 6 -2.3587 -8.3358 -1.0753 19 6 -3.1132 -9.5818 -1.5473 20 6 -4.6062 -9.2608 -1.6473 21 7 -4.8084 -8.1564 -2.5938 22 6 -6.2391 -7.9124 -2.8203 23 6 -6.8467 -9.1005 -3.5206 24 6 -6.8780 -9.1470 -4.9018 25 6 -7.4318 -10.2385 -5.5442 26 6 -7.9615 -11.2799 -4.8054 27 6 -7.9349 -11.2309 -3.4242 28 6 -7.3776 -10.1411 -2.7818 29 6 -4.1319 -6.9352 -2.1384 30 6 -0.4137 -3.5300 -1.5352 31 6 0.2150 -2.3696 -1.1915 32 1 -0.4851 0.8400 -0.0004 33 1 2.6867 -3.6822 0.7670 34 1 1.5361 -5.7465 0.1450 35 1 -0.0859 -6.7464 -1.5300 36 1 -1.2899 -8.5473 -1.0442 37 1 -2.7047 -8.0556 -0.0803 38 1 -2.7397 -9.8846 -2.5255 39 1 -2.9621 -10.3911 -0.8330 40 1 -5.1445 -10.1418 -1.9969 41 1 -4.9819 -8.9713 -0.6660 42 1 -6.7378 -7.7608 -1.8630 43 1 -6.3627 -7.0236 -3.4391 44 1 -6.4674 -8.3317 -5.4790 45 1 -7.4529 -10.2766 -6.6233 46 1 -8.3965 -12.1316 -5.3073 47 1 -8.3491 -12.0443 -2.8469 48 1 -7.3567 -10.1031 -1.7027 49 1 -4.5105 -6.6562 -1.1549 50 1 -4.3253 -6.1274 -2.8442 51 1 -1.2794 -3.5028 -2.1802 52 1 -0.1520 -1.4243 -1.5632 RHF calculation, no. of doubly occupied orbitals= 68 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000038849836.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:37:30 Heat of formation + Delta-G solvation = -9.984807 kcal Electronic energy + Delta-G solvation = -31325.460733 eV Core-core repulsion = 27252.922139 eV Total energy + Delta-G solvation = -4072.538594 eV No. of doubly occupied orbitals = 68 Molecular weight (most abundant/longest-lived isotopes) = 364.189 amu Computer time = 2.66 seconds Orbital eigenvalues (eV) -41.58934 -40.49251 -39.48320 -38.63991 -36.21839 -35.27582 -34.58585 -32.23405 -31.96909 -31.69874 -31.39421 -30.65285 -27.35211 -26.99944 -25.06678 -24.05305 -23.44663 -23.22294 -22.71659 -21.97078 -21.14297 -20.55486 -19.26255 -18.59575 -17.81000 -17.58346 -17.14894 -16.79675 -16.27394 -16.23871 -16.08576 -15.77093 -15.49955 -15.37790 -15.05972 -14.89271 -14.71881 -14.44520 -14.24952 -14.17175 -13.95944 -13.73254 -13.56251 -13.51711 -13.38083 -13.28993 -12.83276 -12.80975 -12.67413 -12.46234 -12.32455 -12.01720 -11.89488 -11.79135 -11.75493 -11.67231 -11.54362 -11.39534 -11.22306 -10.74661 -10.41409 -9.76210 -9.69610 -9.46568 -9.32136 -8.87596 -8.61713 -6.27911 0.44803 0.55205 0.79966 1.13037 1.37281 1.42489 1.53904 1.81218 2.19843 2.25450 2.74512 2.79938 3.18985 3.58495 3.70570 3.72783 3.85299 3.87938 3.99390 4.18999 4.20090 4.21776 4.29039 4.35517 4.37221 4.42958 4.45174 4.57145 4.57646 4.67309 4.72727 4.73855 4.81912 4.92350 4.94464 4.96504 5.07641 5.09429 5.14386 5.15150 5.20275 5.20954 5.29550 5.38655 5.44048 5.60378 5.66826 5.67276 5.74084 5.86050 5.96187 6.07284 6.08733 6.10580 6.16592 6.33274 6.66672 6.74102 6.91980 7.00243 7.42728 8.33285 Molecular weight = 364.19amu Principal moments of inertia in cm(-1) A = 0.022466 B = 0.001634 C = 0.001563 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1246.025181 B =17128.537628 C =17904.817266 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.831 5.831 2 C 0.029 3.971 3 Si 0.986 3.014 4 H -0.252 1.252 5 H -0.267 1.267 6 H -0.267 1.267 7 C -0.494 4.494 8 H 0.082 0.918 9 C 0.072 3.928 10 C -0.222 4.222 11 C -0.099 4.099 12 C 0.008 3.992 13 N -0.641 5.641 14 C 0.502 3.498 15 O -0.580 6.580 16 C -0.085 4.085 17 H 0.122 0.878 18 C -0.110 4.110 19 C -0.106 4.106 20 C 0.046 3.954 21 N -0.529 5.529 22 C 0.093 3.907 23 C -0.084 4.084 24 C -0.113 4.113 25 C -0.128 4.128 26 C -0.127 4.127 27 C -0.126 4.126 28 C -0.123 4.123 29 C 0.083 3.917 30 C -0.100 4.100 31 C -0.180 4.180 32 H 0.286 0.714 33 H 0.111 0.889 34 H 0.135 0.865 35 H 0.417 0.583 36 H 0.091 0.909 37 H 0.053 0.947 38 H 0.080 0.920 39 H 0.091 0.909 40 H 0.089 0.911 41 H 0.028 0.972 42 H 0.042 0.958 43 H 0.080 0.920 44 H 0.122 0.878 45 H 0.136 0.864 46 H 0.140 0.860 47 H 0.139 0.861 48 H 0.125 0.875 49 H 0.022 0.978 50 H 0.067 0.933 51 H 0.089 0.911 52 H 0.096 0.904 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.231 -24.173 -7.495 28.109 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.457 5.457 2 C -0.185 4.185 3 Si 0.806 3.194 4 H -0.175 1.175 5 H -0.192 1.192 6 H -0.192 1.192 7 C -0.523 4.523 8 H 0.100 0.900 9 C 0.069 3.931 10 C -0.242 4.242 11 C -0.119 4.119 12 C -0.085 4.085 13 N -0.286 5.286 14 C 0.290 3.710 15 O -0.459 6.459 16 C -0.107 4.107 17 H 0.140 0.860 18 C -0.148 4.148 19 C -0.144 4.144 20 C -0.081 4.081 21 N -0.253 5.253 22 C -0.034 4.034 23 C -0.085 4.085 24 C -0.131 4.131 25 C -0.146 4.146 26 C -0.145 4.145 27 C -0.144 4.144 28 C -0.141 4.141 29 C -0.045 4.045 30 C -0.120 4.120 31 C -0.200 4.200 32 H 0.097 0.903 33 H 0.129 0.871 34 H 0.153 0.847 35 H 0.255 0.745 36 H 0.110 0.890 37 H 0.072 0.928 38 H 0.098 0.902 39 H 0.109 0.891 40 H 0.107 0.893 41 H 0.046 0.954 42 H 0.060 0.940 43 H 0.099 0.901 44 H 0.140 0.860 45 H 0.154 0.846 46 H 0.158 0.842 47 H 0.157 0.843 48 H 0.143 0.857 49 H 0.041 0.959 50 H 0.085 0.915 51 H 0.108 0.892 52 H 0.114 0.886 Dipole moment (debyes) X Y Z Total from point charges -12.695 -23.484 -7.760 27.800 hybrid contribution -0.087 1.357 0.832 1.594 sum -12.782 -22.127 -6.929 26.476 Atomic orbital electron populations 1.69947 1.09300 1.30428 1.36029 1.26873 0.95427 1.04935 0.91281 0.85112 0.79586 0.75935 0.78768 1.17544 1.19180 1.19177 1.19853 0.98149 0.92230 1.42078 0.89957 1.18019 0.91774 0.93685 0.89588 1.20841 1.04362 0.92471 1.06564 1.20421 0.95961 0.98389 0.97143 1.17257 0.99000 0.85833 1.06409 1.42902 1.06817 1.10843 1.67993 1.21344 0.82104 0.90356 0.77154 1.90713 1.65760 1.37908 1.51540 1.21226 0.95181 0.91798 1.02499 0.86026 1.21621 1.02445 0.93605 0.97094 1.21553 0.93202 0.96660 1.02936 1.22310 0.98060 0.94493 0.93239 1.61915 1.10771 1.05742 1.46921 1.21024 0.87108 0.96351 0.98967 1.19721 0.98768 0.95883 0.94105 1.21187 0.99016 0.98980 0.93951 1.21417 0.98393 0.93902 1.00901 1.21469 0.99536 0.99156 0.94339 1.21395 0.99485 0.98429 0.95114 1.21213 0.98830 0.93972 1.00090 1.21644 0.92430 0.91791 0.98646 1.20436 0.98708 0.92710 1.00160 1.20877 1.00249 0.96460 1.02383 0.90322 0.87124 0.84720 0.74504 0.89044 0.92826 0.90163 0.89055 0.89310 0.95401 0.94015 0.90135 0.85952 0.84571 0.84198 0.84268 0.85704 0.95925 0.91468 0.89236 0.88624 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.83 -46.27 10.94 21.82 0.24 -46.03 16 2 C 0.03 1.52 5.15 85.24 0.44 1.95 16 3 Si 0.99 39.36 29.59 68.60 2.03 41.39 16 4 H -0.25 -9.63 7.11 99.48 0.71 -8.92 16 5 H -0.27 -10.34 7.11 99.48 0.71 -9.63 16 6 H -0.27 -10.23 7.11 99.48 0.71 -9.52 16 7 C -0.49 -27.17 9.04 23.39 0.21 -26.96 16 8 H 0.08 4.28 7.90 -2.91 -0.02 4.26 16 9 C 0.07 4.00 5.57 -21.28 -0.12 3.88 16 10 C -0.22 -10.78 9.74 22.48 0.22 -10.56 16 11 C -0.10 -4.19 9.90 22.14 0.22 -3.97 16 12 C 0.01 0.37 6.26 38.56 0.24 0.61 16 13 N -0.64 -21.35 5.23 -303.12 -1.59 -22.94 16 14 C 0.50 17.32 6.87 87.66 0.60 17.92 16 15 O -0.58 -26.46 13.73 -3.03 -0.04 -26.51 16 16 C -0.09 -2.03 2.70 -11.49 -0.03 -2.06 16 17 H 0.12 2.50 8.14 -2.39 -0.02 2.48 16 18 C -0.11 -1.97 5.16 30.67 0.16 -1.81 16 19 C -0.11 -1.50 6.09 30.65 0.19 -1.31 16 20 C 0.05 0.78 5.16 86.33 0.45 1.23 16 21 N -0.53 -10.72 4.64 -900.91 -4.18 -14.90 16 22 C 0.09 1.78 5.12 85.56 0.44 2.21 16 23 C -0.08 -1.46 4.89 -19.87 -0.10 -1.56 16 24 C -0.11 -1.89 9.70 22.27 0.22 -1.67 16 25 C -0.13 -1.79 10.05 22.27 0.22 -1.57 16 26 C -0.13 -1.58 10.05 22.27 0.22 -1.36 16 27 C -0.13 -1.62 10.05 22.27 0.22 -1.39 16 28 C -0.12 -1.84 7.88 22.27 0.18 -1.67 16 29 C 0.08 2.12 4.04 86.33 0.35 2.47 16 30 C -0.10 -5.20 8.57 22.13 0.19 -5.01 16 31 C -0.18 -10.21 8.63 22.48 0.19 -10.02 16 32 H 0.29 14.47 8.30 -92.71 -0.77 13.70 16 33 H 0.11 4.91 8.06 -2.91 -0.02 4.89 16 34 H 0.14 4.44 8.06 -2.91 -0.02 4.42 16 35 H 0.42 9.97 8.14 -92.71 -0.75 9.21 16 36 H 0.09 1.29 7.53 -2.39 -0.02 1.27 16 37 H 0.05 1.13 8.14 -2.39 -0.02 1.11 16 38 H 0.08 1.09 8.14 -2.39 -0.02 1.07 16 39 H 0.09 0.97 8.14 -2.39 -0.02 0.95 16 40 H 0.09 1.37 5.75 -2.39 -0.01 1.35 16 41 H 0.03 0.50 8.14 -2.39 -0.02 0.48 16 42 H 0.04 0.80 8.07 -2.38 -0.02 0.78 16 43 H 0.08 1.58 7.92 -2.39 -0.02 1.57 16 44 H 0.12 1.96 8.06 -2.91 -0.02 1.93 16 45 H 0.14 1.38 8.06 -2.91 -0.02 1.35 16 46 H 0.14 1.09 8.06 -2.91 -0.02 1.07 16 47 H 0.14 1.16 8.06 -2.91 -0.02 1.14 16 48 H 0.13 1.62 7.95 -2.91 -0.02 1.60 16 49 H 0.02 0.66 8.08 -2.38 -0.02 0.65 16 50 H 0.07 1.91 7.99 -2.39 -0.02 1.89 16 51 H 0.09 4.74 6.49 -2.91 -0.02 4.72 16 52 H 0.10 5.77 6.18 -2.91 -0.02 5.75 16 Total: -1.00 -71.38 415.43 1.34 -70.05 By element: Atomic # 1 Polarization: 39.41 SS G_CDS: 0.17 Total: 39.57 kcal Atomic # 6 Polarization: -45.34 SS G_CDS: 4.71 Total: -40.63 kcal Atomic # 7 Polarization: -78.34 SS G_CDS: -5.53 Total: -83.87 kcal Atomic # 8 Polarization: -26.46 SS G_CDS: -0.04 Total: -26.51 kcal Atomic # 14 Polarization: 39.36 SS G_CDS: 2.03 Total: 41.39 kcal Total: -71.38 1.34 -70.05 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000038849836.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 60.062 kcal (2) G-P(sol) polarization free energy of solvation -71.382 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -11.320 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.335 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.047 kcal (6) G-S(sol) free energy of system = (1) + (5) -9.985 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 2.66 seconds