Wall clock time and date at job start Tue Mar 31 2020 05:37:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30876 * 1 3 3 Si 1.86796 * 119.99639 * 2 1 4 4 H 1.48505 * 109.47426 * 240.00006 * 3 2 1 5 5 H 1.48504 * 109.47330 * 0.02562 * 3 2 1 6 6 H 1.48501 * 109.47250 * 120.00357 * 3 2 1 7 7 C 1.39907 * 120.00106 * 180.02562 * 2 1 3 8 8 H 1.08004 * 119.99372 * 175.57108 * 7 2 1 9 9 C 1.41151 * 120.00126 * 355.57370 * 7 2 1 10 10 C 1.40875 * 120.15936 * 214.77792 * 9 7 2 11 11 C 1.36372 * 119.82415 * 179.97438 * 10 9 7 12 12 C 1.39487 * 120.17040 * 359.97438 * 11 10 9 13 13 N 1.39236 * 119.83297 * 180.02562 * 12 11 10 14 14 C 1.34773 * 119.99676 * 35.30354 * 13 12 11 15 15 O 1.21280 * 120.00451 * 355.70327 * 14 13 12 16 16 C 1.50705 * 119.99831 * 175.70478 * 14 13 12 17 17 H 1.08995 * 109.50909 * 60.07318 * 16 14 13 18 18 C 1.53124 * 109.50294 * 299.99438 * 16 14 13 19 19 C 1.53114 * 109.16080 * 182.40823 * 18 16 14 20 20 C 1.53037 * 109.28331 * 57.65576 * 19 18 16 21 21 N 1.46851 * 109.51905 * 300.82308 * 20 19 18 22 22 C 1.46898 * 110.99707 * 185.83767 * 21 20 19 23 23 C 1.50704 * 109.47312 * 66.04239 * 22 21 20 24 24 C 1.38238 * 119.99668 * 89.99819 * 23 22 21 25 25 C 1.38231 * 119.99938 * 179.72982 * 24 23 22 26 26 C 1.38235 * 120.00013 * 0.25373 * 25 24 23 27 27 C 1.38241 * 119.99910 * 359.97438 * 26 25 24 28 28 C 1.38231 * 120.00130 * 0.02876 * 27 26 25 29 29 C 1.46847 * 111.20049 * 61.74138 * 21 20 19 30 30 C 1.39477 * 120.33244 * 0.29933 * 12 11 10 31 31 C 1.36384 * 120.16837 * 359.44150 * 30 12 11 32 32 H 0.96993 * 119.99947 * 359.97438 * 1 2 3 33 33 H 1.07995 * 120.08298 * 359.95528 * 10 9 7 34 34 H 1.07995 * 119.91409 * 180.02562 * 11 10 9 35 35 H 0.96997 * 120.00060 * 215.28905 * 13 12 11 36 36 H 1.09004 * 109.51903 * 62.49934 * 18 16 14 37 37 H 1.09003 * 109.57141 * 302.34585 * 18 16 14 38 38 H 1.09000 * 109.50001 * 297.71289 * 19 18 16 39 39 H 1.09000 * 109.53496 * 177.61892 * 19 18 16 40 40 H 1.08993 * 109.46518 * 180.80532 * 20 19 18 41 41 H 1.08995 * 109.45157 * 60.82769 * 20 19 18 42 42 H 1.09002 * 109.47509 * 306.04630 * 22 21 20 43 43 H 1.09000 * 109.47366 * 186.04282 * 22 21 20 44 44 H 1.08000 * 120.00160 * 0.02562 * 24 23 22 45 45 H 1.07998 * 120.00295 * 180.28438 * 25 24 23 46 46 H 1.08001 * 120.00291 * 180.02562 * 26 25 24 47 47 H 1.08000 * 120.00066 * 179.97438 * 27 26 25 48 48 H 1.07998 * 120.00361 * 179.97438 * 28 27 26 49 49 H 1.09002 * 109.46340 * 58.27092 * 29 21 20 50 50 H 1.09002 * 109.45922 * 178.24007 * 29 21 20 51 51 H 1.08007 * 119.91776 * 179.72362 * 30 12 11 52 52 H 1.08003 * 120.08651 * 180.25083 * 31 30 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3088 0.0000 0.0000 3 14 2.2426 1.6178 0.0000 4 1 3.0964 1.6965 -1.2125 5 1 1.2776 2.7465 0.0006 6 1 3.0965 1.6965 1.2124 7 6 2.0083 -1.2116 -0.0005 8 1 3.0859 -1.2128 -0.0728 9 6 1.3058 -2.4323 0.0933 10 6 1.8651 -3.5188 0.7942 11 6 1.1801 -4.6948 0.8809 12 6 -0.0713 -4.8233 0.2784 13 7 -0.7647 -6.0270 0.3719 14 6 -0.6824 -6.7666 1.4955 15 8 0.0560 -6.4238 2.3945 16 6 -1.5079 -8.0197 1.6350 17 1 -1.2450 -8.7190 0.8414 18 6 -2.9944 -7.6665 1.5334 19 6 -3.8274 -8.9352 1.7361 20 6 -3.4857 -9.5525 3.0941 21 7 -2.0534 -9.8730 3.1410 22 6 -1.7154 -10.5933 4.3759 23 6 -2.3850 -11.9434 4.3694 24 6 -1.7331 -13.0355 3.8280 25 6 -2.3449 -14.2751 3.8271 26 6 -3.6108 -14.4214 4.3628 27 6 -4.2646 -13.3282 4.9000 28 6 -3.6528 -12.0887 4.9008 29 6 -1.2335 -8.6634 2.9961 30 6 -0.6290 -3.7538 -0.4220 31 6 0.0417 -2.5698 -0.5130 32 1 -0.4850 0.8400 0.0004 33 1 2.8339 -3.4206 1.2612 34 1 1.6074 -5.5285 1.4183 35 1 -1.3072 -6.3333 -0.3716 36 1 -3.2027 -7.2473 0.5490 37 1 -3.2497 -6.9366 2.3016 38 1 -3.6010 -9.6494 0.9444 39 1 -4.8876 -8.6837 1.7070 40 1 -4.0667 -10.4638 3.2353 41 1 -3.7252 -8.8428 3.8860 42 1 -2.0607 -10.0207 5.2367 43 1 -0.6349 -10.7239 4.4362 44 1 -0.7438 -12.9214 3.4101 45 1 -1.8338 -15.1293 3.4082 46 1 -4.0887 -15.3899 4.3624 47 1 -5.2538 -13.4425 5.3181 48 1 -4.1637 -11.2346 5.3201 49 1 -1.4836 -7.9580 3.7885 50 1 -0.1787 -8.9292 3.0661 51 1 -1.5964 -3.8621 -0.8898 52 1 -0.3931 -1.7412 -1.0523 RHF calculation, no. of doubly occupied orbitals= 68 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000038849837.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:37:36 Heat of formation + Delta-G solvation = -7.864769 kcal Electronic energy + Delta-G solvation = -31270.701769 eV Core-core repulsion = 27198.255107 eV Total energy + Delta-G solvation = -4072.446662 eV No. of doubly occupied orbitals = 68 Molecular weight (most abundant/longest-lived isotopes) = 364.189 amu Computer time = 1.63 seconds Orbital eigenvalues (eV) -41.60768 -40.49567 -39.48657 -38.64197 -36.17630 -35.27155 -34.56117 -32.22286 -31.95637 -31.68568 -31.46586 -30.56106 -27.34028 -27.00378 -25.05881 -24.05206 -23.47800 -23.23541 -22.58345 -21.98341 -21.18955 -20.58909 -19.27933 -18.49176 -17.87395 -17.56640 -17.02385 -16.88437 -16.28416 -16.25782 -16.13619 -15.74838 -15.42377 -15.38758 -15.06304 -14.86064 -14.72346 -14.41219 -14.25490 -14.18993 -13.98861 -13.65303 -13.57331 -13.51762 -13.34557 -13.20642 -12.86055 -12.80117 -12.76509 -12.53435 -12.40442 -12.01598 -11.90647 -11.79806 -11.73735 -11.57515 -11.40695 -11.38279 -11.20056 -10.75197 -10.49699 -9.75696 -9.68903 -9.47184 -9.31790 -8.73376 -8.50816 -6.33652 0.45310 0.55799 0.79170 1.13193 1.39021 1.45959 1.50853 1.77947 2.22130 2.25994 2.77701 2.81413 3.19289 3.57540 3.67731 3.70923 3.85605 3.88265 4.00023 4.18094 4.20395 4.21704 4.29745 4.36021 4.38087 4.39964 4.53032 4.57131 4.58392 4.67750 4.73000 4.73965 4.82600 4.92153 4.93162 4.95115 5.07317 5.13317 5.14581 5.15144 5.16603 5.21359 5.34613 5.38113 5.43649 5.60918 5.67855 5.69116 5.74492 5.90581 5.97096 6.02255 6.08218 6.13389 6.17185 6.38748 6.66542 6.72545 6.96183 6.99504 7.38811 8.41731 Molecular weight = 364.19amu Principal moments of inertia in cm(-1) A = 0.029631 B = 0.001552 C = 0.001525 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 944.720984 B =18042.569974 C =18357.218745 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.841 5.841 2 C 0.028 3.972 3 Si 0.988 3.012 4 H -0.258 1.258 5 H -0.267 1.267 6 H -0.266 1.266 7 C -0.500 4.500 8 H 0.072 0.928 9 C 0.066 3.934 10 C -0.221 4.221 11 C -0.098 4.098 12 C 0.022 3.978 13 N -0.642 5.642 14 C 0.504 3.496 15 O -0.576 6.576 16 C -0.085 4.085 17 H 0.125 0.875 18 C -0.110 4.110 19 C -0.106 4.106 20 C 0.047 3.953 21 N -0.529 5.529 22 C 0.093 3.907 23 C -0.084 4.084 24 C -0.112 4.112 25 C -0.128 4.128 26 C -0.127 4.127 27 C -0.127 4.127 28 C -0.123 4.123 29 C 0.084 3.916 30 C -0.119 4.119 31 C -0.158 4.158 32 H 0.285 0.715 33 H 0.094 0.906 34 H 0.107 0.893 35 H 0.417 0.583 36 H 0.088 0.912 37 H 0.050 0.950 38 H 0.081 0.919 39 H 0.088 0.912 40 H 0.088 0.912 41 H 0.027 0.973 42 H 0.041 0.959 43 H 0.083 0.917 44 H 0.124 0.876 45 H 0.137 0.863 46 H 0.139 0.861 47 H 0.138 0.862 48 H 0.124 0.876 49 H 0.022 0.978 50 H 0.072 0.928 51 H 0.126 0.874 52 H 0.119 0.881 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.427 -25.279 4.620 28.544 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.469 5.469 2 C -0.184 4.184 3 Si 0.809 3.191 4 H -0.182 1.182 5 H -0.192 1.192 6 H -0.191 1.191 7 C -0.530 4.530 8 H 0.090 0.910 9 C 0.064 3.936 10 C -0.241 4.241 11 C -0.118 4.118 12 C -0.072 4.072 13 N -0.286 5.286 14 C 0.293 3.707 15 O -0.456 6.456 16 C -0.107 4.107 17 H 0.143 0.857 18 C -0.148 4.148 19 C -0.143 4.143 20 C -0.081 4.081 21 N -0.253 5.253 22 C -0.034 4.034 23 C -0.085 4.085 24 C -0.130 4.130 25 C -0.146 4.146 26 C -0.145 4.145 27 C -0.145 4.145 28 C -0.142 4.142 29 C -0.045 4.045 30 C -0.139 4.139 31 C -0.178 4.178 32 H 0.095 0.905 33 H 0.112 0.888 34 H 0.125 0.875 35 H 0.255 0.745 36 H 0.106 0.894 37 H 0.069 0.931 38 H 0.100 0.900 39 H 0.107 0.893 40 H 0.107 0.893 41 H 0.045 0.955 42 H 0.059 0.941 43 H 0.102 0.898 44 H 0.142 0.858 45 H 0.155 0.845 46 H 0.157 0.843 47 H 0.156 0.844 48 H 0.142 0.858 49 H 0.040 0.960 50 H 0.090 0.910 51 H 0.143 0.857 52 H 0.137 0.863 Dipole moment (debyes) X Y Z Total from point charges -12.033 -25.202 4.866 28.348 hybrid contribution 0.319 1.526 0.631 1.682 sum -11.714 -23.676 5.497 26.981 Atomic orbital electron populations 1.69817 1.08548 1.30016 1.38532 1.26727 0.95820 1.04255 0.91558 0.85164 0.78518 0.75613 0.79819 1.18182 1.19170 1.19104 1.19703 0.94834 0.91384 1.47107 0.90982 1.18038 0.93444 0.92670 0.89456 1.20926 1.01584 0.95586 1.06029 1.20517 0.93816 0.97409 1.00103 1.17340 0.93385 0.87465 1.09015 1.42921 1.48359 1.19797 1.17534 1.21327 0.82488 0.85860 0.81037 1.90670 1.41155 1.72133 1.41614 1.21222 0.95952 0.92909 1.00611 0.85750 1.21607 0.91328 0.98709 1.03184 1.21547 0.99942 0.95785 0.97075 1.22297 0.88163 1.00115 0.97501 1.61936 1.05165 1.21924 1.36245 1.21029 1.00436 0.91449 0.90508 1.19736 0.95099 0.94556 0.99094 1.21193 1.00511 0.92634 0.98674 1.21420 0.95842 0.97606 0.99762 1.21467 0.95216 0.99644 0.98212 1.21391 1.00759 0.92577 0.99789 1.21215 0.94666 0.98180 1.00114 1.21656 0.97832 0.90161 0.94835 1.20572 0.99348 0.92111 1.01834 1.21173 0.97415 0.96483 1.02736 0.90464 0.88756 0.87501 0.74523 0.89371 0.93141 0.90040 0.89346 0.89330 0.95510 0.94071 0.89847 0.85759 0.84537 0.84267 0.84391 0.85804 0.95974 0.90976 0.85650 0.86309 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.84 -44.74 10.59 21.82 0.23 -44.51 16 2 C 0.03 1.46 5.42 85.24 0.46 1.93 16 3 Si 0.99 39.51 29.56 68.60 2.03 41.54 16 4 H -0.26 -9.88 7.11 99.48 0.71 -9.17 16 5 H -0.27 -10.07 7.11 99.48 0.71 -9.36 16 6 H -0.27 -10.56 7.11 99.48 0.71 -9.85 16 7 C -0.50 -27.82 9.03 23.39 0.21 -27.61 16 8 H 0.07 3.88 7.85 -2.91 -0.02 3.85 16 9 C 0.07 3.71 5.55 -21.28 -0.12 3.59 16 10 C -0.22 -11.74 9.74 22.48 0.22 -11.52 16 11 C -0.10 -4.82 8.61 22.14 0.19 -4.63 16 12 C 0.02 0.94 6.31 38.57 0.24 1.18 16 13 N -0.64 -21.04 5.18 -303.11 -1.57 -22.61 16 14 C 0.50 16.64 6.99 87.66 0.61 17.25 16 15 O -0.58 -24.62 13.40 -3.03 -0.04 -24.66 16 16 C -0.09 -1.94 2.69 -11.48 -0.03 -1.97 16 17 H 0.12 2.36 8.14 -2.39 -0.02 2.34 16 18 C -0.11 -2.04 5.17 30.67 0.16 -1.88 16 19 C -0.11 -1.53 6.09 30.64 0.19 -1.34 16 20 C 0.05 0.78 5.15 86.32 0.45 1.22 16 21 N -0.53 -10.19 4.65 -900.91 -4.19 -14.38 16 22 C 0.09 1.68 5.12 85.56 0.44 2.12 16 23 C -0.08 -1.40 4.90 -19.86 -0.10 -1.50 16 24 C -0.11 -1.77 9.70 22.27 0.22 -1.55 16 25 C -0.13 -1.72 10.05 22.27 0.22 -1.49 16 26 C -0.13 -1.54 10.05 22.27 0.22 -1.32 16 27 C -0.13 -1.60 10.05 22.27 0.22 -1.38 16 28 C -0.12 -1.81 7.88 22.27 0.18 -1.64 16 29 C 0.08 2.01 4.03 86.33 0.35 2.36 16 30 C -0.12 -5.31 9.90 22.14 0.22 -5.09 16 31 C -0.16 -8.30 8.61 22.48 0.19 -8.10 16 32 H 0.28 13.78 8.30 -92.71 -0.77 13.01 16 33 H 0.09 4.83 8.06 -2.91 -0.02 4.81 16 34 H 0.11 5.20 6.22 -2.91 -0.02 5.18 16 35 H 0.42 10.07 8.42 -92.71 -0.78 9.29 16 36 H 0.09 1.36 7.75 -2.38 -0.02 1.34 16 37 H 0.05 1.12 8.14 -2.39 -0.02 1.10 16 38 H 0.08 1.10 8.14 -2.39 -0.02 1.08 16 39 H 0.09 1.01 8.14 -2.39 -0.02 0.99 16 40 H 0.09 1.36 5.74 -2.39 -0.01 1.34 16 41 H 0.03 0.49 8.14 -2.39 -0.02 0.47 16 42 H 0.04 0.76 8.07 -2.39 -0.02 0.74 16 43 H 0.08 1.50 7.93 -2.39 -0.02 1.49 16 44 H 0.12 1.83 8.06 -2.91 -0.02 1.81 16 45 H 0.14 1.29 8.06 -2.91 -0.02 1.27 16 46 H 0.14 1.05 8.06 -2.91 -0.02 1.03 16 47 H 0.14 1.15 8.06 -2.91 -0.02 1.13 16 48 H 0.12 1.59 7.93 -2.91 -0.02 1.57 16 49 H 0.02 0.62 8.08 -2.39 -0.02 0.60 16 50 H 0.07 1.88 7.99 -2.39 -0.02 1.86 16 51 H 0.13 4.66 8.06 -2.91 -0.02 4.64 16 52 H 0.12 6.49 6.13 -2.91 -0.02 6.47 16 Total: -1.00 -68.34 415.19 1.35 -66.99 By element: Atomic # 1 Polarization: 38.87 SS G_CDS: 0.14 Total: 39.02 kcal Atomic # 6 Polarization: -46.13 SS G_CDS: 4.74 Total: -41.39 kcal Atomic # 7 Polarization: -75.97 SS G_CDS: -5.53 Total: -81.49 kcal Atomic # 8 Polarization: -24.62 SS G_CDS: -0.04 Total: -24.66 kcal Atomic # 14 Polarization: 39.51 SS G_CDS: 2.03 Total: 41.54 kcal Total: -68.34 1.35 -66.99 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000038849837.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 59.128 kcal (2) G-P(sol) polarization free energy of solvation -68.341 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -9.213 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.348 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.993 kcal (6) G-S(sol) free energy of system = (1) + (5) -7.865 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.63 seconds