Wall clock time and date at job start Tue Mar 31 2020 05:55:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31410 * 1 3 3 Si 1.86800 * 119.99939 * 2 1 4 4 H 1.48503 * 109.47149 * 270.00012 * 3 2 1 5 5 H 1.48491 * 109.46934 * 30.00150 * 3 2 1 6 6 H 1.48496 * 109.46843 * 150.00449 * 3 2 1 7 7 C 1.39007 * 119.99981 * 180.02562 * 2 1 3 8 8 H 1.07998 * 119.99949 * 185.66676 * 7 2 1 9 9 N 1.36885 * 119.99782 * 5.66877 * 7 2 1 10 10 C 1.46499 * 120.00690 * 49.91675 * 9 7 2 11 11 C 1.50696 * 109.47159 * 94.07047 * 10 9 7 12 12 C 1.38233 * 119.99892 * 85.70432 * 11 10 9 13 13 C 1.38244 * 120.00111 * 179.97438 * 12 11 10 14 14 C 1.38233 * 119.99775 * 0.07214 * 13 12 11 15 15 C 1.38230 * 120.00106 * 359.90350 * 14 13 12 16 16 C 1.38234 * 120.00071 * 0.05341 * 15 14 13 17 17 C 1.34779 * 119.99492 * 229.91905 * 9 7 2 18 18 O 1.21755 * 120.00087 * 176.15765 * 17 9 7 19 19 C 1.46365 * 119.99992 * 356.15762 * 17 9 7 20 20 C 1.36809 * 125.45435 * 186.51450 * 19 17 9 21 21 C 1.37385 * 113.29320 * 179.86558 * 20 19 17 22 22 C 1.34005 * 115.08782 * 0.41908 * 21 20 19 23 23 Br 1.89095 * 124.52217 * 179.76534 * 22 21 20 24 24 S 1.70612 * 110.95325 * 359.77066 * 22 21 20 25 25 H 0.96992 * 119.99807 * 359.97438 * 1 2 3 26 26 H 1.09005 * 109.46856 * 334.07610 * 10 9 7 27 27 H 1.08995 * 109.47334 * 214.07103 * 10 9 7 28 28 H 1.08004 * 120.00138 * 359.70091 * 12 11 10 29 29 H 1.07994 * 120.00012 * 179.97438 * 13 12 11 30 30 H 1.07994 * 120.00044 * 179.97438 * 14 13 12 31 31 H 1.08001 * 120.00070 * 180.02562 * 15 14 13 32 32 H 1.08004 * 120.00469 * 179.97438 * 16 15 14 33 33 H 1.08001 * 123.35419 * 359.97438 * 20 19 17 34 34 H 1.08003 * 122.45752 * 180.19519 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3141 0.0000 0.0000 3 14 2.2481 1.6177 0.0000 4 1 2.4956 2.0464 -1.4001 5 1 1.4456 2.6526 0.7000 6 1 3.5456 1.4401 0.6999 7 6 2.0091 -1.2038 -0.0005 8 1 3.0852 -1.2062 0.0918 9 7 1.3297 -2.3863 -0.1182 10 6 0.3434 -2.5614 -1.1872 11 6 1.0014 -3.2131 -2.3759 12 6 1.1008 -4.5903 -2.4420 13 6 1.7039 -5.1882 -3.5328 14 6 2.2089 -4.4088 -4.5567 15 6 2.1090 -3.0317 -4.4909 16 6 1.5052 -2.4339 -3.4006 17 6 1.5681 -3.3896 0.7496 18 8 0.9148 -4.4153 0.6888 19 6 2.6124 -3.2462 1.7651 20 6 3.0333 -4.2320 2.6153 21 6 4.0312 -3.8251 3.4673 22 6 4.4109 -2.5474 3.3285 23 35 5.7531 -1.7098 4.3642 24 16 3.5216 -1.7774 2.0928 25 1 -0.4849 0.8400 0.0004 26 1 -0.0525 -1.5886 -1.4791 27 1 -0.4704 -3.1928 -0.8308 28 1 0.7112 -5.1990 -1.6394 29 1 1.7819 -6.2641 -3.5842 30 1 2.6804 -4.8759 -5.4087 31 1 2.5032 -2.4228 -5.2911 32 1 1.4275 -1.3579 -3.3489 33 1 2.6231 -5.2311 2.6154 34 1 4.4746 -4.4854 4.1979 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) Br: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000040222513.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:55:06 Heat of formation + Delta-G solvation = 23.479442 kcal Electronic energy + Delta-G solvation = -21883.624957 eV Core-core repulsion = 18533.211872 eV Total energy + Delta-G solvation = -3350.413085 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 364.983 amu Computer time = 0.77 seconds Orbital eigenvalues (eV) -39.25836 -38.17939 -36.85428 -34.99454 -32.25210 -31.50067 -30.85323 -30.34954 -28.17796 -26.04533 -25.09421 -23.39869 -21.99326 -21.19319 -19.98560 -18.90656 -17.80687 -16.75342 -16.02080 -15.43453 -14.98557 -14.83275 -14.63004 -14.39501 -14.07943 -13.87001 -12.94298 -12.87974 -12.74305 -12.36692 -12.22307 -12.12984 -11.84489 -11.66207 -11.48786 -11.33100 -10.96502 -10.62700 -10.58897 -10.38759 -10.31342 -10.25429 -9.83961 -9.25965 -8.91122 -8.39609 -8.20506 -8.05457 -7.91171 -7.63081 -6.75430 -4.63572 1.11322 1.69230 1.86031 1.93227 2.46617 2.70280 2.91287 2.99199 3.03628 3.05029 3.79024 4.16209 4.24318 4.67353 4.71585 5.37008 5.40710 5.51262 5.74844 5.78491 5.88823 5.95294 6.05182 6.11169 6.35611 6.41444 6.53196 6.64379 6.76405 6.85754 6.90317 6.96870 7.00128 7.04827 7.34843 7.54668 7.67747 7.94368 8.63775 9.13531 9.58536 10.23733 Molecular weight = 364.98amu Principal moments of inertia in cm(-1) A = 0.011679 B = 0.004033 C = 0.003439 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2396.796076 B = 6940.303329 C = 8139.564928 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.836 5.836 2 C 0.067 3.933 3 Si 0.903 3.097 4 H -0.267 1.267 5 H -0.274 1.274 6 H -0.254 1.254 7 C -0.343 4.343 8 H 0.097 0.903 9 N -0.427 5.427 10 C 0.156 3.844 11 C -0.084 4.084 12 C -0.103 4.103 13 C -0.132 4.132 14 C -0.132 4.132 15 C -0.132 4.132 16 C -0.098 4.098 17 C 0.546 3.454 18 O -0.585 6.585 19 C -0.206 4.206 20 C -0.104 4.104 21 C -0.114 4.114 22 C -0.307 4.307 23 Br -0.030 7.030 24 S 0.342 5.658 25 H 0.280 0.720 26 H 0.109 0.891 27 H 0.069 0.931 28 H 0.128 0.872 29 H 0.113 0.887 30 H 0.111 0.889 31 H 0.113 0.887 32 H 0.121 0.879 33 H 0.145 0.855 34 H 0.129 0.871 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.025 -0.806 0.591 7.096 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.468 5.468 2 C -0.146 4.146 3 Si 0.727 3.273 4 H -0.193 1.193 5 H -0.199 1.199 6 H -0.178 1.178 7 C -0.479 4.479 8 H 0.114 0.886 9 N -0.144 5.144 10 C 0.033 3.967 11 C -0.085 4.085 12 C -0.121 4.121 13 C -0.150 4.150 14 C -0.151 4.151 15 C -0.150 4.150 16 C -0.117 4.117 17 C 0.335 3.665 18 O -0.471 6.471 19 C -0.329 4.329 20 C -0.137 4.137 21 C -0.149 4.149 22 C -0.503 4.503 23 Br 0.053 6.947 24 S 0.617 5.383 25 H 0.091 0.909 26 H 0.127 0.873 27 H 0.087 0.913 28 H 0.146 0.854 29 H 0.131 0.869 30 H 0.129 0.871 31 H 0.132 0.868 32 H 0.139 0.861 33 H 0.163 0.837 34 H 0.147 0.853 Dipole moment (debyes) X Y Z Total from point charges 7.069 0.626 0.438 7.110 hybrid contribution 0.271 -0.877 0.511 1.051 sum 7.340 -0.251 0.949 7.405 Atomic orbital electron populations 1.69798 1.06353 1.29013 1.41624 1.25627 0.95376 1.00059 0.93536 0.86236 0.80548 0.80893 0.79601 1.19255 1.19872 1.17797 1.19259 0.91256 0.83267 1.54069 0.88610 1.43135 1.36308 1.11958 1.23048 1.20373 0.90427 1.01688 0.84179 1.20618 0.98209 0.93525 0.96153 1.21352 0.98327 0.94936 0.97524 1.21077 0.99848 0.99251 0.94794 1.20994 1.01203 0.94073 0.98802 1.21046 1.00759 0.94728 0.98474 1.21116 0.97327 0.99927 0.93324 1.17295 0.83372 0.85086 0.80744 1.90659 1.51585 1.30696 1.74174 1.24940 1.04653 0.98574 1.04704 1.20416 0.97627 1.00207 0.95481 1.19721 0.99255 0.94207 1.01713 1.27400 1.07521 1.03248 1.12152 1.96516 1.49199 1.79573 1.69411 1.84855 1.24059 1.09393 1.20015 0.90929 0.87346 0.91299 0.85430 0.86905 0.87057 0.86847 0.86102 0.83744 0.85334 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 19. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.84 -19.57 11.53 55.50 0.64 -18.93 16 2 C 0.07 1.48 5.19 -17.45 -0.09 1.39 16 3 Si 0.90 17.23 29.56 -169.99 -5.02 12.21 16 4 H -0.27 -5.03 7.11 56.52 0.40 -4.62 16 5 H -0.27 -5.25 7.11 56.52 0.40 -4.84 16 6 H -0.25 -4.69 7.11 56.52 0.40 -4.29 16 7 C -0.34 -7.78 6.83 -15.01 -0.10 -7.88 16 8 H 0.10 2.13 5.34 -31.72 -0.17 1.96 16 9 N -0.43 -9.96 2.43 -117.69 -0.29 -10.25 16 10 C 0.16 3.44 5.03 -5.20 -0.03 3.41 16 11 C -0.08 -1.66 5.43 -104.63 -0.57 -2.23 16 12 C -0.10 -1.95 9.54 -39.58 -0.38 -2.33 16 13 C -0.13 -2.15 10.05 -39.58 -0.40 -2.54 16 14 C -0.13 -2.00 10.05 -39.59 -0.40 -2.40 16 15 C -0.13 -2.07 10.05 -39.59 -0.40 -2.47 16 16 C -0.10 -1.77 9.68 -39.58 -0.38 -2.16 16 17 C 0.55 13.01 7.56 -12.99 -0.10 12.91 16 18 O -0.58 -14.76 15.27 5.14 0.08 -14.68 16 19 C -0.21 -4.40 6.30 -36.83 -0.23 -4.63 16 20 C -0.10 -1.98 10.02 -40.41 -0.40 -2.39 16 21 C -0.11 -1.97 10.05 -41.38 -0.42 -2.38 16 22 C -0.31 -5.39 6.70 29.24 0.20 -5.19 16 23 Br -0.03 -0.46 34.04 -68.01 -2.31 -2.77 16 24 S 0.34 6.63 18.34 -107.50 -1.97 4.66 16 25 H 0.28 6.15 8.31 -40.82 -0.34 5.81 16 26 H 0.11 2.46 5.90 -51.93 -0.31 2.15 16 27 H 0.07 1.58 7.46 -51.93 -0.39 1.19 16 28 H 0.13 2.56 7.02 -52.48 -0.37 2.19 16 29 H 0.11 1.56 8.06 -52.49 -0.42 1.14 16 30 H 0.11 1.36 8.06 -52.49 -0.42 0.94 16 31 H 0.11 1.48 8.06 -52.49 -0.42 1.05 16 32 H 0.12 2.14 8.06 -52.48 -0.42 1.72 16 33 H 0.14 2.61 8.06 -52.49 -0.42 2.19 16 34 H 0.13 1.90 8.06 -52.48 -0.42 1.48 16 LS Contribution 327.35 15.07 4.93 4.93 Total: -1.00 -25.12 327.35 -10.55 -35.66 By element: Atomic # 1 Polarization: 10.96 SS G_CDS: -2.90 Total: 8.06 kcal Atomic # 6 Polarization: -15.20 SS G_CDS: -3.70 Total: -18.89 kcal Atomic # 7 Polarization: -29.53 SS G_CDS: 0.35 Total: -29.18 kcal Atomic # 8 Polarization: -14.76 SS G_CDS: 0.08 Total: -14.68 kcal Atomic # 14 Polarization: 17.23 SS G_CDS: -5.02 Total: 12.21 kcal Atomic # 16 Polarization: 6.63 SS G_CDS: -1.97 Total: 4.66 kcal Atomic # 35 Polarization: -0.46 SS G_CDS: -2.31 Total: -2.77 kcal Total LS contribution 4.93 Total: 4.93 kcal Total: -25.12 -10.55 -35.66 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000040222513.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 59.141 kcal (2) G-P(sol) polarization free energy of solvation -25.115 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 34.025 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.546 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.661 kcal (6) G-S(sol) free energy of system = (1) + (5) 23.479 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.77 seconds