Wall clock time and date at job start Tue Mar 31 2020 05:55:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31410 * 1 3 3 Si 1.86800 * 119.99939 * 2 1 4 4 H 1.48503 * 109.47149 * 270.00012 * 3 2 1 5 5 H 1.48491 * 109.46934 * 30.00150 * 3 2 1 6 6 H 1.48496 * 109.46843 * 150.00449 * 3 2 1 7 7 C 1.39007 * 119.99981 * 180.02562 * 2 1 3 8 8 H 1.07998 * 119.99949 * 185.66676 * 7 2 1 9 9 N 1.36885 * 119.99782 * 5.66877 * 7 2 1 10 10 C 1.46499 * 120.00690 * 49.91675 * 9 7 2 11 11 C 1.50696 * 109.47159 * 94.07047 * 10 9 7 12 12 C 1.38233 * 119.99892 * 85.70432 * 11 10 9 13 13 C 1.38244 * 120.00111 * 179.97438 * 12 11 10 14 14 C 1.38233 * 119.99775 * 0.07214 * 13 12 11 15 15 C 1.38230 * 120.00106 * 359.90350 * 14 13 12 16 16 C 1.38234 * 120.00071 * 0.05341 * 15 14 13 17 17 C 1.34779 * 119.99492 * 229.91905 * 9 7 2 18 18 O 1.21755 * 120.00087 * 176.15765 * 17 9 7 19 19 C 1.46365 * 119.99992 * 356.15762 * 17 9 7 20 20 C 1.36809 * 125.45435 * 186.51450 * 19 17 9 21 21 C 1.37385 * 113.29320 * 179.86558 * 20 19 17 22 22 C 1.34005 * 115.08782 * 0.41908 * 21 20 19 23 23 Br 1.89095 * 124.52217 * 179.76534 * 22 21 20 24 24 S 1.70612 * 110.95325 * 359.77066 * 22 21 20 25 25 H 0.96992 * 119.99807 * 359.97438 * 1 2 3 26 26 H 1.09005 * 109.46856 * 334.07610 * 10 9 7 27 27 H 1.08995 * 109.47334 * 214.07103 * 10 9 7 28 28 H 1.08004 * 120.00138 * 359.70091 * 12 11 10 29 29 H 1.07994 * 120.00012 * 179.97438 * 13 12 11 30 30 H 1.07994 * 120.00044 * 179.97438 * 14 13 12 31 31 H 1.08001 * 120.00070 * 180.02562 * 15 14 13 32 32 H 1.08004 * 120.00469 * 179.97438 * 16 15 14 33 33 H 1.08001 * 123.35419 * 359.97438 * 20 19 17 34 34 H 1.08003 * 122.45752 * 180.19519 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3141 0.0000 0.0000 3 14 2.2481 1.6177 0.0000 4 1 2.4956 2.0464 -1.4001 5 1 1.4456 2.6526 0.7000 6 1 3.5456 1.4401 0.6999 7 6 2.0091 -1.2038 -0.0005 8 1 3.0852 -1.2062 0.0918 9 7 1.3297 -2.3863 -0.1182 10 6 0.3434 -2.5614 -1.1872 11 6 1.0014 -3.2131 -2.3759 12 6 1.1008 -4.5903 -2.4420 13 6 1.7039 -5.1882 -3.5328 14 6 2.2089 -4.4088 -4.5567 15 6 2.1090 -3.0317 -4.4909 16 6 1.5052 -2.4339 -3.4006 17 6 1.5681 -3.3896 0.7496 18 8 0.9148 -4.4153 0.6888 19 6 2.6124 -3.2462 1.7651 20 6 3.0333 -4.2320 2.6153 21 6 4.0312 -3.8251 3.4673 22 6 4.4109 -2.5474 3.3285 23 35 5.7531 -1.7098 4.3642 24 16 3.5216 -1.7774 2.0928 25 1 -0.4849 0.8400 0.0004 26 1 -0.0525 -1.5886 -1.4791 27 1 -0.4704 -3.1928 -0.8308 28 1 0.7112 -5.1990 -1.6394 29 1 1.7819 -6.2641 -3.5842 30 1 2.6804 -4.8759 -5.4087 31 1 2.5032 -2.4228 -5.2911 32 1 1.4275 -1.3579 -3.3489 33 1 2.6231 -5.2311 2.6154 34 1 4.4746 -4.4854 4.1979 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) Br: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000040222513.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:55:06 Heat of formation + Delta-G solvation = 13.375860 kcal Electronic energy + Delta-G solvation = -21884.063081 eV Core-core repulsion = 18533.211872 eV Total energy + Delta-G solvation = -3350.851209 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 364.983 amu Computer time = 0.62 seconds Orbital eigenvalues (eV) -40.89660 -39.65738 -38.36672 -36.75749 -33.91348 -32.98758 -32.32421 -31.69327 -29.67370 -27.68718 -26.74914 -24.93126 -23.34689 -22.66619 -21.59234 -20.52713 -19.39362 -18.35283 -17.45476 -17.06518 -16.67254 -16.41570 -16.05384 -15.87130 -15.60531 -15.42746 -14.50286 -14.28305 -14.20658 -13.82960 -13.73830 -13.61543 -13.39161 -13.15484 -13.08822 -12.93905 -12.56692 -12.11196 -12.01435 -11.77965 -11.75185 -11.70928 -11.27978 -10.92545 -10.66207 -9.74532 -9.65208 -9.60791 -9.43284 -9.29592 -8.45729 -6.40750 -0.42998 0.24324 0.49501 0.57771 0.98775 1.17469 1.39970 1.45851 1.50314 1.56249 2.20165 2.44936 2.73097 2.96728 3.16132 4.03363 4.11380 4.22028 4.29271 4.34919 4.37641 4.49070 4.55953 4.73544 4.86308 4.94324 5.10634 5.18147 5.22563 5.25210 5.31356 5.39707 5.64760 5.65841 5.86804 5.95727 6.19622 6.21748 6.89967 7.36202 7.82543 8.55336 Molecular weight = 364.98amu Principal moments of inertia in cm(-1) A = 0.011679 B = 0.004033 C = 0.003439 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2396.796076 B = 6940.303329 C = 8139.564928 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.871 5.871 2 C 0.035 3.965 3 Si 0.953 3.047 4 H -0.260 1.260 5 H -0.275 1.275 6 H -0.241 1.241 7 C -0.356 4.356 8 H 0.102 0.898 9 N -0.432 5.432 10 C 0.163 3.837 11 C -0.105 4.105 12 C -0.123 4.123 13 C -0.130 4.130 14 C -0.122 4.122 15 C -0.125 4.125 16 C -0.112 4.112 17 C 0.530 3.470 18 O -0.616 6.616 19 C -0.246 4.246 20 C -0.093 4.093 21 C -0.110 4.110 22 C -0.299 4.299 23 Br 0.004 6.996 24 S 0.338 5.662 25 H 0.282 0.718 26 H 0.096 0.904 27 H 0.042 0.958 28 H 0.104 0.896 29 H 0.139 0.861 30 H 0.153 0.847 31 H 0.148 0.852 32 H 0.117 0.883 33 H 0.150 0.850 34 H 0.161 0.839 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.886 -0.605 0.115 9.905 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.504 5.504 2 C -0.174 4.174 3 Si 0.773 3.227 4 H -0.185 1.185 5 H -0.200 1.200 6 H -0.164 1.164 7 C -0.489 4.489 8 H 0.119 0.881 9 N -0.149 5.149 10 C 0.040 3.960 11 C -0.107 4.107 12 C -0.142 4.142 13 C -0.148 4.148 14 C -0.140 4.140 15 C -0.143 4.143 16 C -0.130 4.130 17 C 0.321 3.679 18 O -0.505 6.505 19 C -0.368 4.368 20 C -0.127 4.127 21 C -0.144 4.144 22 C -0.497 4.497 23 Br 0.088 6.912 24 S 0.611 5.389 25 H 0.092 0.908 26 H 0.114 0.886 27 H 0.060 0.940 28 H 0.122 0.878 29 H 0.157 0.843 30 H 0.171 0.829 31 H 0.166 0.834 32 H 0.135 0.865 33 H 0.167 0.833 34 H 0.178 0.822 Dipole moment (debyes) X Y Z Total from point charges 9.928 0.845 -0.065 9.964 hybrid contribution -0.528 -1.011 0.731 1.355 sum 9.400 -0.166 0.666 9.425 Atomic orbital electron populations 1.69895 1.07754 1.29775 1.42948 1.26305 0.95818 1.02507 0.92765 0.85493 0.79923 0.77244 0.79991 1.18493 1.19962 1.16411 1.19494 0.91588 0.83221 1.54642 0.88109 1.43335 1.36121 1.12262 1.23145 1.20190 0.90089 1.00554 0.85141 1.20439 0.99946 0.94156 0.96116 1.21256 1.00053 0.94472 0.98443 1.21381 0.98668 1.00841 0.93915 1.21456 0.99612 0.93737 0.99178 1.21429 0.99179 0.95603 0.98044 1.21169 0.98184 0.99717 0.93952 1.17739 0.83990 0.84917 0.81297 1.90611 1.53004 1.31691 1.75211 1.24864 1.05820 1.00440 1.05705 1.20664 0.97337 0.99996 0.94718 1.19935 0.98350 0.94505 1.01587 1.27416 1.07651 1.03311 1.11272 1.96561 1.47398 1.79057 1.68195 1.84588 1.24223 1.08930 1.21114 0.90772 0.88590 0.93976 0.87821 0.84337 0.82910 0.83423 0.86528 0.83251 0.82171 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.87 -42.50 11.53 21.68 0.25 -42.25 16 2 C 0.04 1.60 5.19 84.94 0.44 2.04 16 3 Si 0.95 34.97 29.56 68.60 2.03 37.00 16 4 H -0.26 -9.21 7.11 99.48 0.71 -8.50 16 5 H -0.27 -10.06 7.11 99.48 0.71 -9.35 16 6 H -0.24 -8.26 7.11 99.48 0.71 -7.56 16 7 C -0.36 -16.62 6.83 84.09 0.57 -16.05 16 8 H 0.10 4.54 5.34 -16.12 -0.09 4.45 16 9 N -0.43 -21.28 2.43 -644.46 -1.57 -22.85 16 10 C 0.16 7.75 5.03 85.63 0.43 8.18 16 11 C -0.11 -4.39 5.43 -19.87 -0.11 -4.50 16 12 C -0.12 -4.88 9.54 22.27 0.21 -4.67 16 13 C -0.13 -4.07 10.05 22.27 0.22 -3.85 16 14 C -0.12 -3.28 10.05 22.27 0.22 -3.06 16 15 C -0.12 -3.61 10.05 22.27 0.22 -3.39 16 16 C -0.11 -4.05 9.68 22.27 0.22 -3.83 16 17 C 0.53 26.64 7.56 86.36 0.65 27.29 16 18 O -0.62 -33.19 15.27 -4.53 -0.07 -33.26 16 19 C -0.25 -10.73 6.30 24.05 0.15 -10.58 16 20 C -0.09 -3.50 10.02 21.73 0.22 -3.28 16 21 C -0.11 -3.54 10.05 21.10 0.21 -3.33 16 22 C -0.30 -9.87 6.70 66.86 0.45 -9.42 16 23 Br 0.00 0.12 34.04 -20.37 -0.69 -0.57 16 24 S 0.34 12.91 18.34 -56.49 -1.04 11.87 16 25 H 0.28 12.87 8.31 -92.71 -0.77 12.10 16 26 H 0.10 4.71 5.90 -2.38 -0.01 4.69 16 27 H 0.04 2.14 7.46 -2.39 -0.02 2.12 16 28 H 0.10 4.51 7.02 -2.91 -0.02 4.49 16 29 H 0.14 3.54 8.06 -2.91 -0.02 3.52 16 30 H 0.15 2.91 8.06 -2.91 -0.02 2.88 16 31 H 0.15 3.25 8.06 -2.91 -0.02 3.23 16 32 H 0.12 4.23 8.06 -2.91 -0.02 4.21 16 33 H 0.15 5.40 8.06 -2.91 -0.02 5.38 16 34 H 0.16 4.15 8.06 -2.91 -0.02 4.12 16 Total: -1.00 -56.83 327.35 4.10 -52.72 By element: Atomic # 1 Polarization: 24.71 SS G_CDS: 1.07 Total: 25.78 kcal Atomic # 6 Polarization: -32.56 SS G_CDS: 4.12 Total: -28.44 kcal Atomic # 7 Polarization: -63.78 SS G_CDS: -1.32 Total: -65.09 kcal Atomic # 8 Polarization: -33.19 SS G_CDS: -0.07 Total: -33.26 kcal Atomic # 14 Polarization: 34.97 SS G_CDS: 2.03 Total: 37.00 kcal Atomic # 16 Polarization: 12.91 SS G_CDS: -1.04 Total: 11.87 kcal Atomic # 35 Polarization: 0.12 SS G_CDS: -0.69 Total: -0.57 kcal Total: -56.83 4.10 -52.72 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000040222513.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 66.098 kcal (2) G-P(sol) polarization free energy of solvation -56.826 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 9.273 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.103 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -52.722 kcal (6) G-S(sol) free energy of system = (1) + (5) 13.376 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.62 seconds