Wall clock time and date at job start Tue Mar 31 2020 05:41:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.52996 * 109.47239 * 2 1 4 4 C 1.53000 * 109.47591 * 180.02562 * 3 2 1 5 5 N 1.46497 * 109.47577 * 180.02562 * 4 3 2 6 6 C 1.38552 * 119.94512 * 89.99964 * 5 4 3 7 7 N 1.33541 * 133.90162 * 0.02562 * 6 5 4 8 8 C 1.30868 * 109.80529 * 179.97438 * 7 6 5 9 9 C 1.50707 * 125.14155 * 180.02562 * 8 7 6 10 10 O 1.42890 * 109.47044 * 269.95762 * 9 8 7 11 11 N 1.34731 * 109.71675 * 0.02562 * 8 7 6 12 12 C 1.46495 * 126.50745 * 180.02562 * 11 8 7 13 13 C 1.53001 * 109.47140 * 269.95215 * 12 11 8 14 14 C 1.53002 * 109.47440 * 179.97438 * 13 12 11 15 15 C 1.38060 * 106.98635 * 359.97438 * 11 8 7 16 16 C 1.41146 * 134.59163 * 180.02562 * 15 11 8 17 17 O 1.21803 * 120.38928 * 359.97438 * 16 15 11 18 18 N 1.34930 * 119.22588 * 180.24836 * 16 15 11 19 19 C 1.46503 * 119.50878 * 179.69787 * 18 16 15 20 20 C 1.50707 * 109.46624 * 90.00416 * 19 18 16 21 21 H 1.07997 * 119.99930 * 0.02562 * 20 19 18 22 22 C 1.37882 * 119.99701 * 180.02562 * 20 19 18 23 23 N 1.31510 * 120.00188 * 359.97438 * 22 20 19 24 24 Si 1.86801 * 119.99617 * 180.02562 * 22 20 19 25 25 H 1.48493 * 109.47269 * 89.99992 * 24 22 20 26 26 H 1.48504 * 109.46570 * 209.99784 * 24 22 20 27 27 H 1.48497 * 109.47068 * 329.99449 * 24 22 20 28 28 C 1.34425 * 120.99008 * 359.44338 * 18 16 15 29 29 O 1.21605 * 119.16791 * 180.29124 * 28 18 16 30 30 H 1.09001 * 109.47075 * 179.97438 * 1 2 3 31 31 H 1.08994 * 109.47099 * 299.99739 * 1 2 3 32 32 H 1.09006 * 109.47025 * 59.99865 * 1 2 3 33 33 H 1.09007 * 109.47365 * 240.00355 * 2 1 3 34 34 H 1.08998 * 109.47159 * 120.00436 * 2 1 3 35 35 H 1.09002 * 109.47280 * 59.99623 * 3 2 1 36 36 H 1.08998 * 109.47401 * 300.00288 * 3 2 1 37 37 H 1.09002 * 109.47134 * 59.99512 * 4 3 2 38 38 H 1.08998 * 109.46966 * 300.00533 * 4 3 2 39 39 H 1.08996 * 109.46982 * 29.96722 * 9 8 7 40 40 H 1.09008 * 109.46461 * 149.95952 * 9 8 7 41 41 H 0.96707 * 113.99829 * 180.02562 * 10 9 8 42 42 H 1.08990 * 109.47281 * 29.95344 * 12 11 8 43 43 H 1.09009 * 109.47228 * 149.95917 * 12 11 8 44 44 H 1.08995 * 109.47579 * 300.00375 * 13 12 11 45 45 H 1.09009 * 109.46487 * 60.00247 * 13 12 11 46 46 H 1.09003 * 109.46511 * 60.00609 * 14 13 12 47 47 H 1.08996 * 109.46887 * 180.02562 * 14 13 12 48 48 H 1.08995 * 109.47209 * 300.00807 * 14 13 12 49 49 H 1.08994 * 109.47387 * 210.00497 * 19 18 16 50 50 H 1.08998 * 109.46808 * 330.01176 * 19 18 16 51 51 H 0.96997 * 120.00494 * 180.02562 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 3.5700 1.4425 -0.0006 5 7 4.0583 2.8237 0.0000 6 6 4.2894 3.4751 1.2008 7 7 4.1665 3.1239 2.4834 8 6 4.5202 4.1220 3.2523 9 6 4.5147 4.1005 4.7592 10 8 3.2430 4.5435 5.2372 11 7 4.8901 5.1718 2.4930 12 6 5.3521 6.4759 2.9746 13 6 4.1530 7.4112 3.1435 14 6 4.6354 8.7731 3.6471 15 6 4.7521 4.7847 1.1750 16 6 4.9727 5.4118 -0.0702 17 8 5.3779 6.5594 -0.1190 18 7 4.7242 4.7269 -1.2059 19 6 4.9447 5.3739 -2.5017 20 6 6.3602 5.1229 -2.9540 21 1 7.0285 4.5394 -2.3381 22 6 6.8020 5.6382 -4.1542 23 7 5.9881 6.3483 -4.9044 24 14 8.5563 5.3264 -4.7152 25 1 8.6049 4.0779 -5.5176 26 1 9.0205 6.4669 -5.5454 27 1 9.4380 5.1868 -3.5285 28 6 4.2822 3.4580 -1.1663 29 8 4.0740 2.8701 -2.2102 30 1 -0.3633 -1.0277 -0.0005 31 1 -0.3633 0.5138 0.8900 32 1 -0.3633 0.5139 -0.8900 33 1 1.8934 -0.5138 -0.8901 34 1 1.8933 -0.5139 0.8899 35 1 1.6766 1.9563 0.8900 36 1 1.6766 1.9563 -0.8899 37 1 3.9330 0.9288 -0.8908 38 1 3.9337 0.9285 0.8890 39 1 4.7008 3.0850 5.1087 40 1 5.2949 4.7627 5.1348 41 1 3.1677 4.5556 6.2012 42 1 5.8541 6.3519 3.9340 43 1 6.0479 6.9041 2.2529 44 1 3.6509 7.5352 2.1841 45 1 3.4572 6.9830 3.8651 46 1 5.3314 9.2013 2.9258 47 1 3.7811 9.4391 3.7678 48 1 5.1373 8.6487 4.6066 49 1 4.2507 4.9639 -3.2353 50 1 4.7792 6.4469 -2.4048 51 1 6.2988 6.7105 -5.7489 RHF calculation, no. of doubly occupied orbitals= 69 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000040461230.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:41:43 Heat of formation + Delta-G solvation = -45.933280 kcal Electronic energy + Delta-G solvation = -34821.702386 eV Core-core repulsion = 30336.755687 eV Total energy + Delta-G solvation = -4484.946700 eV No. of doubly occupied orbitals = 69 Molecular weight (most abundant/longest-lived isotopes) = 364.194 amu Computer time = 1.55 seconds Orbital eigenvalues (eV) -42.83084 -40.67228 -38.50928 -37.24506 -36.43707 -35.82073 -34.61426 -34.30344 -32.66879 -32.15318 -30.77880 -29.08784 -27.93974 -26.83384 -26.14774 -24.20496 -23.81514 -22.43465 -22.15118 -21.85862 -21.11204 -19.93730 -19.07636 -18.17505 -18.02304 -16.99536 -16.78834 -16.06659 -15.60989 -15.56183 -15.30219 -15.19820 -14.96619 -14.86303 -14.63975 -14.40872 -14.21346 -13.96647 -13.53120 -13.42474 -13.35328 -12.94334 -12.67504 -12.51611 -12.37924 -12.30957 -12.18486 -11.76502 -11.51763 -11.37055 -11.26253 -11.11278 -11.09274 -11.01327 -10.67995 -10.60840 -10.56417 -10.53687 -10.38199 -10.24345 -9.96045 -9.83015 -9.53405 -9.51321 -8.54198 -8.44460 -7.84700 -6.07183 -4.10770 1.09319 2.08698 2.44440 2.59342 2.72648 3.33203 3.37609 3.40612 3.49916 3.80464 4.06271 4.19441 4.42273 4.44570 4.46170 4.65876 4.69108 4.82293 4.88679 4.96876 4.97822 5.02294 5.10071 5.12813 5.29450 5.29822 5.33979 5.49862 5.60277 5.60413 5.64843 5.70383 5.79099 5.83954 5.87222 5.94432 6.02047 6.07285 6.12207 6.25338 6.33716 6.42207 6.54512 6.71594 6.88643 7.13123 7.25878 7.33253 7.63255 7.85627 7.99464 8.10092 8.27882 8.62979 8.88693 9.52101 11.02692 Molecular weight = 364.19amu Principal moments of inertia in cm(-1) A = 0.006851 B = 0.004280 C = 0.002884 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 4085.811444 B = 6541.232379 C = 9705.313387 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C -0.118 4.118 3 C -0.134 4.134 4 C 0.124 3.876 5 N -0.516 5.516 6 C 0.311 3.689 7 N -0.481 5.481 8 C 0.259 3.741 9 C 0.164 3.836 10 O -0.561 6.561 11 N -0.395 5.395 12 C 0.101 3.899 13 C -0.137 4.137 14 C -0.146 4.146 15 C -0.134 4.134 16 C 0.587 3.413 17 O -0.508 6.508 18 N -0.530 5.530 19 C 0.246 3.754 20 C -0.526 4.526 21 H 0.057 0.943 22 C 0.066 3.934 23 N -0.891 5.891 24 Si 0.903 3.097 25 H -0.278 1.278 26 H -0.284 1.284 27 H -0.274 1.274 28 C 0.703 3.297 29 O -0.524 6.524 30 H 0.053 0.947 31 H 0.052 0.948 32 H 0.054 0.946 33 H 0.065 0.935 34 H 0.063 0.937 35 H 0.066 0.934 36 H 0.069 0.931 37 H 0.097 0.903 38 H 0.090 0.910 39 H 0.087 0.913 40 H 0.069 0.931 41 H 0.388 0.612 42 H 0.094 0.906 43 H 0.109 0.891 44 H 0.074 0.926 45 H 0.074 0.926 46 H 0.062 0.938 47 H 0.061 0.939 48 H 0.055 0.945 49 H 0.060 0.940 50 H 0.058 0.942 51 H 0.265 0.735 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.032 -5.320 23.533 24.869 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.156 4.156 3 C -0.173 4.173 4 C 0.002 3.998 5 N -0.245 5.245 6 C 0.080 3.920 7 N -0.208 5.208 8 C -0.004 4.004 9 C 0.085 3.915 10 O -0.366 6.366 11 N -0.078 5.078 12 C -0.020 4.020 13 C -0.175 4.175 14 C -0.204 4.204 15 C -0.252 4.252 16 C 0.379 3.621 17 O -0.383 6.383 18 N -0.272 5.272 19 C 0.130 3.870 20 C -0.564 4.564 21 H 0.076 0.924 22 C -0.136 4.136 23 N -0.530 5.530 24 Si 0.730 3.270 25 H -0.204 1.204 26 H -0.209 1.209 27 H -0.199 1.199 28 C 0.406 3.594 29 O -0.395 6.395 30 H 0.072 0.928 31 H 0.072 0.928 32 H 0.073 0.927 33 H 0.084 0.916 34 H 0.082 0.918 35 H 0.085 0.915 36 H 0.088 0.912 37 H 0.115 0.885 38 H 0.108 0.892 39 H 0.105 0.895 40 H 0.087 0.913 41 H 0.237 0.763 42 H 0.112 0.888 43 H 0.128 0.872 44 H 0.093 0.907 45 H 0.093 0.907 46 H 0.081 0.919 47 H 0.080 0.920 48 H 0.074 0.926 49 H 0.077 0.923 50 H 0.076 0.924 51 H 0.075 0.925 Dipole moment (debyes) X Y Z Total from point charges -6.261 -5.447 22.286 23.781 hybrid contribution 1.380 0.526 -0.001 1.477 sum -4.881 -4.921 22.285 23.338 Atomic orbital electron populations 1.21746 0.95778 1.01368 1.01908 1.21403 0.95973 0.96054 1.02180 1.21959 0.94708 0.97645 1.02992 1.21693 0.94639 0.79092 1.04390 1.44255 1.64190 1.15182 1.00897 1.18029 0.98188 0.88636 0.87134 1.69465 1.24192 1.28512 0.98606 1.22689 1.00464 0.82656 0.94591 1.20186 0.86481 1.00943 0.83891 1.86566 1.33130 1.89666 1.27270 1.44617 1.46849 1.12603 1.03681 1.22223 0.98525 0.79797 1.01442 1.21864 0.97100 0.95376 1.03175 1.21662 1.01831 0.95893 1.01029 1.19290 1.21588 0.97367 0.86939 1.15420 0.78442 0.86163 0.82097 1.90834 1.43620 1.16571 1.87300 1.46465 1.58111 1.11541 1.11105 1.19734 0.98614 0.93932 0.74769 1.21175 0.96098 1.34039 1.05136 0.92436 1.24851 0.98116 0.94693 0.95978 1.69920 1.35555 1.34673 1.12835 0.86417 0.84030 0.77877 0.78651 1.20395 1.20950 1.19911 1.15656 0.79013 0.81957 0.82800 1.90994 1.55340 1.64312 1.28857 0.92837 0.92845 0.92658 0.91609 0.91845 0.91540 0.91183 0.88496 0.89172 0.89493 0.91270 0.76306 0.88824 0.87245 0.90743 0.90732 0.91914 0.91957 0.92615 0.92257 0.92362 0.92516 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.45 9.91 37.16 0.37 -1.08 16 2 C -0.12 -1.24 5.93 -26.73 -0.16 -1.40 16 3 C -0.13 -1.79 5.54 -26.73 -0.15 -1.94 16 4 C 0.12 1.83 5.36 -4.04 -0.02 1.81 16 5 N -0.52 -9.58 2.66 -120.87 -0.32 -9.90 16 6 C 0.31 5.56 7.63 -154.55 -1.18 4.38 16 7 N -0.48 -7.43 11.16 -9.55 -0.11 -7.54 16 8 C 0.26 3.36 7.48 -155.39 -1.16 2.20 16 9 C 0.16 1.23 7.33 36.01 0.26 1.49 16 10 O -0.56 -4.20 13.64 -35.23 -0.48 -4.68 16 11 N -0.39 -5.75 2.78 -111.09 -0.31 -6.06 16 12 C 0.10 1.16 5.72 -4.04 -0.02 1.14 16 13 C -0.14 -1.48 6.26 -26.73 -0.17 -1.65 16 14 C -0.15 -1.24 9.91 37.16 0.37 -0.87 16 15 C -0.13 -2.51 6.90 -83.70 -0.58 -3.09 16 16 C 0.59 13.24 7.43 -15.09 -0.11 13.13 16 17 O -0.51 -12.33 15.56 5.10 0.08 -12.26 16 18 N -0.53 -12.86 2.54 -125.45 -0.32 -13.18 16 19 C 0.25 6.84 4.81 -5.19 -0.02 6.82 16 20 C -0.53 -15.58 9.38 -34.43 -0.32 -15.90 16 21 H 0.06 1.72 7.81 -52.49 -0.41 1.31 16 22 C 0.07 1.94 5.46 -17.82 -0.10 1.85 16 23 N -0.89 -26.89 13.29 55.43 0.74 -26.15 16 24 Si 0.90 22.44 29.54 -169.99 -5.02 17.42 16 25 H -0.28 -6.81 7.11 56.52 0.40 -6.40 16 26 H -0.28 -6.87 7.11 56.52 0.40 -6.47 16 27 H -0.27 -6.74 7.11 56.52 0.40 -6.34 16 28 C 0.70 15.84 8.11 -87.36 -0.71 15.13 16 29 O -0.52 -12.91 15.27 5.27 0.08 -12.83 16 30 H 0.05 0.44 8.14 -51.93 -0.42 0.02 16 31 H 0.05 0.50 8.14 -51.93 -0.42 0.08 16 32 H 0.05 0.56 8.14 -51.93 -0.42 0.13 16 33 H 0.07 0.68 8.14 -51.92 -0.42 0.26 16 34 H 0.06 0.60 8.14 -51.93 -0.42 0.17 16 35 H 0.07 0.91 8.14 -51.93 -0.42 0.49 16 36 H 0.07 1.06 8.14 -51.93 -0.42 0.64 16 37 H 0.10 1.47 7.38 -51.93 -0.38 1.09 16 38 H 0.09 1.18 8.01 -51.93 -0.42 0.76 16 39 H 0.09 0.51 8.14 -51.93 -0.42 0.09 16 40 H 0.07 0.32 7.01 -51.92 -0.36 -0.04 16 41 H 0.39 0.72 9.12 45.56 0.42 1.13 16 42 H 0.09 0.70 6.99 -51.93 -0.36 0.34 16 43 H 0.11 1.48 7.27 -51.92 -0.38 1.10 16 44 H 0.07 1.03 8.14 -51.93 -0.42 0.61 16 45 H 0.07 0.76 8.14 -51.92 -0.42 0.34 16 46 H 0.06 0.59 8.14 -51.93 -0.42 0.16 16 47 H 0.06 0.49 8.14 -51.93 -0.42 0.07 16 48 H 0.05 0.36 8.14 -51.93 -0.42 -0.06 16 49 H 0.06 1.74 7.35 -51.93 -0.38 1.36 16 50 H 0.06 1.70 7.40 -51.93 -0.38 1.32 16 51 H 0.27 7.50 8.31 -40.82 -0.34 7.16 16 LS Contribution 423.44 15.07 6.38 6.38 Total: -1.00 -37.18 423.44 -10.28 -47.46 By element: Atomic # 1 Polarization: 6.61 SS G_CDS: -7.30 Total: -0.68 kcal Atomic # 6 Polarization: 25.72 SS G_CDS: -3.70 Total: 22.02 kcal Atomic # 7 Polarization: -62.51 SS G_CDS: -0.32 Total: -62.83 kcal Atomic # 8 Polarization: -29.45 SS G_CDS: -0.32 Total: -29.77 kcal Atomic # 14 Polarization: 22.44 SS G_CDS: -5.02 Total: 17.42 kcal Total LS contribution 6.38 Total: 6.38 kcal Total: -37.18 -10.28 -47.46 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000040461230.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 1.529 kcal (2) G-P(sol) polarization free energy of solvation -37.182 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -35.653 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.280 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -47.462 kcal (6) G-S(sol) free energy of system = (1) + (5) -45.933 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.55 seconds