Wall clock time and date at job start Tue Mar 31 2020 05:41:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.52996 * 109.47239 * 2 1 4 4 C 1.53000 * 109.47591 * 180.02562 * 3 2 1 5 5 N 1.46497 * 109.47577 * 180.02562 * 4 3 2 6 6 C 1.38552 * 119.94512 * 89.99964 * 5 4 3 7 7 N 1.33541 * 133.90162 * 0.02562 * 6 5 4 8 8 C 1.30868 * 109.80529 * 179.97438 * 7 6 5 9 9 C 1.50707 * 125.14155 * 180.02562 * 8 7 6 10 10 O 1.42890 * 109.47044 * 269.95762 * 9 8 7 11 11 N 1.34731 * 109.71675 * 0.02562 * 8 7 6 12 12 C 1.46495 * 126.50745 * 180.02562 * 11 8 7 13 13 C 1.53001 * 109.47140 * 269.95215 * 12 11 8 14 14 C 1.53002 * 109.47440 * 179.97438 * 13 12 11 15 15 C 1.38060 * 106.98635 * 359.97438 * 11 8 7 16 16 C 1.41146 * 134.59163 * 180.02562 * 15 11 8 17 17 O 1.21803 * 120.38928 * 359.97438 * 16 15 11 18 18 N 1.34930 * 119.22588 * 180.24836 * 16 15 11 19 19 C 1.46503 * 119.50878 * 179.69787 * 18 16 15 20 20 C 1.50707 * 109.46624 * 90.00416 * 19 18 16 21 21 H 1.07997 * 119.99930 * 0.02562 * 20 19 18 22 22 C 1.37882 * 119.99701 * 180.02562 * 20 19 18 23 23 N 1.31510 * 120.00188 * 359.97438 * 22 20 19 24 24 Si 1.86801 * 119.99617 * 180.02562 * 22 20 19 25 25 H 1.48493 * 109.47269 * 89.99992 * 24 22 20 26 26 H 1.48504 * 109.46570 * 209.99784 * 24 22 20 27 27 H 1.48497 * 109.47068 * 329.99449 * 24 22 20 28 28 C 1.34425 * 120.99008 * 359.44338 * 18 16 15 29 29 O 1.21605 * 119.16791 * 180.29124 * 28 18 16 30 30 H 1.09001 * 109.47075 * 179.97438 * 1 2 3 31 31 H 1.08994 * 109.47099 * 299.99739 * 1 2 3 32 32 H 1.09006 * 109.47025 * 59.99865 * 1 2 3 33 33 H 1.09007 * 109.47365 * 240.00355 * 2 1 3 34 34 H 1.08998 * 109.47159 * 120.00436 * 2 1 3 35 35 H 1.09002 * 109.47280 * 59.99623 * 3 2 1 36 36 H 1.08998 * 109.47401 * 300.00288 * 3 2 1 37 37 H 1.09002 * 109.47134 * 59.99512 * 4 3 2 38 38 H 1.08998 * 109.46966 * 300.00533 * 4 3 2 39 39 H 1.08996 * 109.46982 * 29.96722 * 9 8 7 40 40 H 1.09008 * 109.46461 * 149.95952 * 9 8 7 41 41 H 0.96707 * 113.99829 * 180.02562 * 10 9 8 42 42 H 1.08990 * 109.47281 * 29.95344 * 12 11 8 43 43 H 1.09009 * 109.47228 * 149.95917 * 12 11 8 44 44 H 1.08995 * 109.47579 * 300.00375 * 13 12 11 45 45 H 1.09009 * 109.46487 * 60.00247 * 13 12 11 46 46 H 1.09003 * 109.46511 * 60.00609 * 14 13 12 47 47 H 1.08996 * 109.46887 * 180.02562 * 14 13 12 48 48 H 1.08995 * 109.47209 * 300.00807 * 14 13 12 49 49 H 1.08994 * 109.47387 * 210.00497 * 19 18 16 50 50 H 1.08998 * 109.46808 * 330.01176 * 19 18 16 51 51 H 0.96997 * 120.00494 * 180.02562 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 3.5700 1.4425 -0.0006 5 7 4.0583 2.8237 0.0000 6 6 4.2894 3.4751 1.2008 7 7 4.1665 3.1239 2.4834 8 6 4.5202 4.1220 3.2523 9 6 4.5147 4.1005 4.7592 10 8 3.2430 4.5435 5.2372 11 7 4.8901 5.1718 2.4930 12 6 5.3521 6.4759 2.9746 13 6 4.1530 7.4112 3.1435 14 6 4.6354 8.7731 3.6471 15 6 4.7521 4.7847 1.1750 16 6 4.9727 5.4118 -0.0702 17 8 5.3779 6.5594 -0.1190 18 7 4.7242 4.7269 -1.2059 19 6 4.9447 5.3739 -2.5017 20 6 6.3602 5.1229 -2.9540 21 1 7.0285 4.5394 -2.3381 22 6 6.8020 5.6382 -4.1542 23 7 5.9881 6.3483 -4.9044 24 14 8.5563 5.3264 -4.7152 25 1 8.6049 4.0779 -5.5176 26 1 9.0205 6.4669 -5.5454 27 1 9.4380 5.1868 -3.5285 28 6 4.2822 3.4580 -1.1663 29 8 4.0740 2.8701 -2.2102 30 1 -0.3633 -1.0277 -0.0005 31 1 -0.3633 0.5138 0.8900 32 1 -0.3633 0.5139 -0.8900 33 1 1.8934 -0.5138 -0.8901 34 1 1.8933 -0.5139 0.8899 35 1 1.6766 1.9563 0.8900 36 1 1.6766 1.9563 -0.8899 37 1 3.9330 0.9288 -0.8908 38 1 3.9337 0.9285 0.8890 39 1 4.7008 3.0850 5.1087 40 1 5.2949 4.7627 5.1348 41 1 3.1677 4.5556 6.2012 42 1 5.8541 6.3519 3.9340 43 1 6.0479 6.9041 2.2529 44 1 3.6509 7.5352 2.1841 45 1 3.4572 6.9830 3.8651 46 1 5.3314 9.2013 2.9258 47 1 3.7811 9.4391 3.7678 48 1 5.1373 8.6487 4.6066 49 1 4.2507 4.9639 -3.2353 50 1 4.7792 6.4469 -2.4048 51 1 6.2988 6.7105 -5.7489 RHF calculation, no. of doubly occupied orbitals= 69 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000040461230.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:41:38 Heat of formation + Delta-G solvation = -71.180360 kcal Electronic energy + Delta-G solvation = -34822.797182 eV Core-core repulsion = 30336.755687 eV Total energy + Delta-G solvation = -4486.041495 eV No. of doubly occupied orbitals = 69 Molecular weight (most abundant/longest-lived isotopes) = 364.194 amu Computer time = 4.40 seconds Orbital eigenvalues (eV) -44.20223 -42.26358 -40.22894 -38.20084 -37.51074 -37.00370 -36.21393 -35.69032 -34.71966 -33.25766 -32.03236 -30.33862 -29.54641 -28.09718 -27.24182 -25.82648 -25.33041 -24.00415 -23.57985 -22.94664 -22.10990 -21.08931 -20.52631 -19.62300 -19.07496 -18.58016 -18.27882 -17.76790 -17.18850 -16.93438 -16.72509 -16.35835 -16.34982 -16.02884 -15.84809 -15.69376 -15.44945 -15.28191 -14.99560 -14.70903 -14.47269 -14.30137 -13.98835 -13.67388 -13.56959 -13.39867 -13.25137 -13.16073 -12.99593 -12.74672 -12.66021 -12.49488 -12.39611 -12.26350 -12.09262 -12.02722 -11.99777 -11.80218 -11.57851 -11.54430 -11.48804 -11.23433 -11.03674 -10.86871 -10.72591 -10.52157 -9.28010 -8.33955 -6.48118 -0.27067 0.63064 0.85167 1.26526 1.32906 1.36836 1.42689 1.47040 1.89281 2.30086 2.40456 2.74666 2.98835 3.15439 3.30722 3.58307 3.77766 3.83132 3.86857 3.92035 4.07504 4.11783 4.18589 4.24103 4.33080 4.40039 4.40582 4.48596 4.51687 4.57516 4.60000 4.67840 4.75682 4.81353 4.82470 4.91232 4.94028 4.99451 5.06943 5.11402 5.17598 5.23761 5.29694 5.32909 5.43807 5.44783 5.54175 5.78778 5.81636 6.17546 6.39335 6.50107 6.53168 6.87800 6.95279 7.20376 8.76801 Molecular weight = 364.19amu Principal moments of inertia in cm(-1) A = 0.006851 B = 0.004280 C = 0.002884 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 4085.811444 B = 6541.232379 C = 9705.313387 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C -0.112 4.112 3 C -0.125 4.125 4 C 0.119 3.881 5 N -0.508 5.508 6 C 0.314 3.686 7 N -0.489 5.489 8 C 0.286 3.714 9 C 0.165 3.835 10 O -0.581 6.581 11 N -0.394 5.394 12 C 0.096 3.904 13 C -0.129 4.129 14 C -0.141 4.141 15 C -0.170 4.170 16 C 0.581 3.419 17 O -0.542 6.542 18 N -0.544 5.544 19 C 0.266 3.734 20 C -0.549 4.549 21 H 0.048 0.952 22 C 0.016 3.984 23 N -0.921 5.921 24 Si 0.976 3.024 25 H -0.268 1.268 26 H -0.269 1.269 27 H -0.270 1.270 28 C 0.701 3.299 29 O -0.557 6.557 30 H 0.071 0.929 31 H 0.055 0.945 32 H 0.043 0.957 33 H 0.066 0.934 34 H 0.083 0.917 35 H 0.064 0.936 36 H 0.042 0.958 37 H 0.090 0.910 38 H 0.117 0.883 39 H 0.112 0.888 40 H 0.110 0.890 41 H 0.415 0.585 42 H 0.148 0.852 43 H 0.081 0.919 44 H 0.029 0.971 45 H 0.088 0.912 46 H 0.046 0.954 47 H 0.066 0.934 48 H 0.088 0.912 49 H 0.033 0.967 50 H 0.032 0.968 51 H 0.272 0.728 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.091 -6.804 27.736 29.009 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.150 4.150 3 C -0.164 4.164 4 C -0.001 4.001 5 N -0.236 5.236 6 C 0.082 3.918 7 N -0.215 5.215 8 C 0.022 3.978 9 C 0.085 3.915 10 O -0.391 6.391 11 N -0.076 5.076 12 C -0.024 4.024 13 C -0.168 4.168 14 C -0.199 4.199 15 C -0.287 4.287 16 C 0.376 3.624 17 O -0.420 6.420 18 N -0.286 5.286 19 C 0.147 3.853 20 C -0.587 4.587 21 H 0.066 0.934 22 C -0.185 4.185 23 N -0.560 5.560 24 Si 0.798 3.202 25 H -0.193 1.193 26 H -0.193 1.193 27 H -0.194 1.194 28 C 0.403 3.597 29 O -0.431 6.431 30 H 0.090 0.910 31 H 0.074 0.926 32 H 0.062 0.938 33 H 0.085 0.915 34 H 0.102 0.898 35 H 0.082 0.918 36 H 0.061 0.939 37 H 0.109 0.891 38 H 0.135 0.865 39 H 0.129 0.871 40 H 0.128 0.872 41 H 0.269 0.731 42 H 0.166 0.834 43 H 0.100 0.900 44 H 0.048 0.952 45 H 0.107 0.893 46 H 0.065 0.935 47 H 0.085 0.915 48 H 0.107 0.893 49 H 0.051 0.949 50 H 0.050 0.950 51 H 0.081 0.919 Dipole moment (debyes) X Y Z Total from point charges -5.346 -6.942 26.571 27.979 hybrid contribution 0.992 0.992 -1.130 1.802 sum -4.354 -5.949 25.441 26.488 Atomic orbital electron populations 1.21746 0.95012 1.02443 1.01538 1.21395 0.96584 0.93823 1.03224 1.21883 0.93442 0.99568 1.01489 1.22037 0.95691 0.77093 1.05316 1.44240 1.63059 1.16037 1.00221 1.18205 0.97586 0.88208 0.87794 1.69597 1.25304 1.29549 0.97026 1.24112 0.95898 0.80829 0.96925 1.20564 0.87782 1.03657 0.79453 1.86487 1.32905 1.89725 1.29985 1.44893 1.46742 1.14020 1.01970 1.22526 0.98460 0.78528 1.02897 1.21803 0.96894 0.96810 1.01247 1.21647 1.01913 0.94289 1.02031 1.18872 1.24462 0.97903 0.87508 1.15868 0.77737 0.85846 0.82955 1.90791 1.45627 1.17882 1.87743 1.46352 1.58923 1.12560 1.10753 1.19114 0.97579 0.92397 0.76177 1.21349 0.96657 1.34814 1.05914 0.93364 1.25837 1.02999 0.93944 0.95681 1.70031 1.37752 1.34947 1.13266 0.85306 0.78007 0.78484 0.78365 1.19274 1.19330 1.19408 1.15699 0.78873 0.81356 0.83752 1.90951 1.56892 1.64883 1.30345 0.91011 0.92555 0.93763 0.91519 0.89797 0.91756 0.93906 0.89136 0.86478 0.87069 0.87217 0.73132 0.83413 0.90038 0.95210 0.89320 0.93499 0.91478 0.89321 0.94863 0.95030 0.91861 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.69 9.91 71.98 0.71 -1.98 16 2 C -0.11 -2.21 5.93 30.59 0.18 -2.02 16 3 C -0.13 -3.35 5.54 30.59 0.17 -3.18 16 4 C 0.12 3.52 5.36 86.38 0.46 3.99 16 5 N -0.51 -19.49 2.66 -654.67 -1.74 -21.23 16 6 C 0.31 11.27 7.63 132.82 1.01 12.28 16 7 N -0.49 -14.03 11.16 -184.13 -2.05 -16.09 16 8 C 0.29 6.54 7.48 138.12 1.03 7.57 16 9 C 0.16 1.54 7.33 71.24 0.52 2.06 16 10 O -0.58 -5.71 13.64 -148.98 -2.03 -7.74 16 11 N -0.39 -11.01 2.78 -505.38 -1.40 -12.41 16 12 C 0.10 2.04 5.72 86.38 0.49 2.53 16 13 C -0.13 -2.68 6.26 30.60 0.19 -2.48 16 14 C -0.14 -2.16 9.91 71.98 0.71 -1.44 16 15 C -0.17 -6.59 6.90 39.04 0.27 -6.32 16 16 C 0.58 28.16 7.43 84.93 0.63 28.79 16 17 O -0.54 -28.57 15.56 -4.68 -0.07 -28.65 16 18 N -0.54 -28.57 2.54 -787.36 -2.00 -30.57 16 19 C 0.27 16.07 4.81 85.63 0.41 16.48 16 20 C -0.55 -34.38 9.38 25.60 0.24 -34.14 16 21 H 0.05 3.03 7.81 -2.91 -0.02 3.01 16 22 C 0.02 0.94 5.46 84.66 0.46 1.40 16 23 N -0.92 -57.66 13.29 21.45 0.28 -57.37 16 24 Si 0.98 46.90 29.54 68.60 2.03 48.93 16 25 H -0.27 -12.38 7.11 99.48 0.71 -11.67 16 26 H -0.27 -12.19 7.11 99.48 0.71 -11.48 16 27 H -0.27 -12.66 7.11 99.48 0.71 -11.95 16 28 C 0.70 33.73 8.11 179.21 1.45 35.18 16 29 O -0.56 -29.44 15.27 -4.05 -0.06 -29.50 16 30 H 0.07 1.04 8.14 -2.39 -0.02 1.02 16 31 H 0.06 0.97 8.14 -2.39 -0.02 0.95 16 32 H 0.04 0.88 8.14 -2.38 -0.02 0.86 16 33 H 0.07 1.31 8.14 -2.38 -0.02 1.29 16 34 H 0.08 1.34 8.14 -2.39 -0.02 1.32 16 35 H 0.06 1.74 8.14 -2.39 -0.02 1.72 16 36 H 0.04 1.37 8.14 -2.39 -0.02 1.35 16 37 H 0.09 2.82 7.38 -2.39 -0.02 2.80 16 38 H 0.12 2.85 8.01 -2.39 -0.02 2.83 16 39 H 0.11 0.61 8.14 -2.39 -0.02 0.59 16 40 H 0.11 0.22 7.01 -2.38 -0.02 0.21 16 41 H 0.42 -0.78 9.12 -74.05 -0.68 -1.46 16 42 H 0.15 1.50 6.99 -2.39 -0.02 1.49 16 43 H 0.08 2.25 7.27 -2.38 -0.02 2.23 16 44 H 0.03 0.87 8.14 -2.39 -0.02 0.85 16 45 H 0.09 1.58 8.14 -2.38 -0.02 1.56 16 46 H 0.05 0.87 8.14 -2.39 -0.02 0.85 16 47 H 0.07 0.97 8.14 -2.39 -0.02 0.95 16 48 H 0.09 0.79 8.14 -2.39 -0.02 0.77 16 49 H 0.03 2.14 7.35 -2.39 -0.02 2.12 16 50 H 0.03 2.03 7.40 -2.39 -0.02 2.02 16 51 H 0.27 15.76 8.31 -92.71 -0.77 14.99 16 Total: -1.00 -88.88 423.44 2.19 -86.70 By element: Atomic # 1 Polarization: 8.93 SS G_CDS: 0.28 Total: 9.21 kcal Atomic # 6 Polarization: 49.76 SS G_CDS: 8.97 Total: 58.73 kcal Atomic # 7 Polarization: -130.76 SS G_CDS: -6.91 Total: -137.67 kcal Atomic # 8 Polarization: -63.72 SS G_CDS: -2.17 Total: -65.89 kcal Atomic # 14 Polarization: 46.90 SS G_CDS: 2.03 Total: 48.93 kcal Total: -88.88 2.19 -86.70 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000040461230.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 15.515 kcal (2) G-P(sol) polarization free energy of solvation -88.883 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -73.368 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.187 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -86.696 kcal (6) G-S(sol) free energy of system = (1) + (5) -71.180 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 4.40 seconds