Wall clock time and date at job start Tue Mar 31 2020 07:46:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50694 * 1 3 3 C 1.33383 * 125.20272 * 2 1 4 4 C 1.38430 * 114.91792 * 180.20591 * 3 2 1 5 5 S 1.76205 * 122.53652 * 179.75644 * 4 3 2 6 6 O 1.42104 * 106.40241 * 227.57224 * 5 4 3 7 7 O 1.42094 * 106.40398 * 0.49649 * 5 4 3 8 8 N 1.65607 * 107.21428 * 114.03569 * 5 4 3 9 9 C 1.46500 * 119.99869 * 276.52795 * 8 5 4 10 10 C 1.50693 * 109.47173 * 95.00153 * 9 8 5 11 11 H 1.07998 * 120.00043 * 0.02562 * 10 9 8 12 12 C 1.37879 * 119.99961 * 179.97438 * 10 9 8 13 13 N 1.31516 * 119.99998 * 179.97438 * 12 10 9 14 14 Si 1.86796 * 120.00073 * 0.02562 * 12 10 9 15 15 H 1.48506 * 109.47040 * 89.99465 * 14 12 10 16 16 H 1.48495 * 109.47227 * 209.99602 * 14 12 10 17 17 H 1.48504 * 109.47114 * 329.99619 * 14 12 10 18 18 C 1.46502 * 119.99705 * 96.52787 * 8 5 4 19 19 C 1.50702 * 109.46931 * 97.67518 * 18 8 5 20 20 C 1.38685 * 120.41469 * 269.71768 * 19 18 8 21 21 C 1.38629 * 118.41510 * 179.78365 * 20 19 18 22 22 C 1.38219 * 119.16452 * 0.51393 * 21 20 19 23 23 N 1.31857 * 120.76309 * 359.72562 * 22 21 20 24 24 C 1.31883 * 121.72626 * 359.97438 * 23 22 21 25 25 C 1.33388 * 114.92219 * 359.49116 * 4 3 2 26 26 C 1.50697 * 125.20292 * 180.24765 * 25 4 3 27 27 S 1.75881 * 109.59218 * 0.26939 * 25 4 3 28 28 H 1.09002 * 109.47529 * 180.33800 * 1 2 3 29 29 H 1.09002 * 109.47348 * 300.34060 * 1 2 3 30 30 H 1.09000 * 109.47400 * 60.34076 * 1 2 3 31 31 H 1.07997 * 122.54381 * 359.96211 * 3 2 1 32 32 H 1.09008 * 109.46689 * 215.00297 * 9 8 5 33 33 H 1.09003 * 109.47264 * 334.99663 * 9 8 5 34 34 H 0.96996 * 120.00006 * 180.02562 * 13 12 10 35 35 H 1.08997 * 109.47120 * 217.67043 * 18 8 5 36 36 H 1.09000 * 109.47323 * 337.67471 * 18 8 5 37 37 H 1.07997 * 120.78930 * 0.02562 * 20 19 18 38 38 H 1.08000 * 120.41502 * 180.21724 * 21 20 19 39 39 H 1.08004 * 119.62101 * 179.74988 * 22 21 20 40 40 H 1.08000 * 119.61777 * 180.02562 * 24 23 22 41 41 H 1.09004 * 109.46595 * 84.11806 * 26 25 4 42 42 H 1.08994 * 109.47033 * 204.11532 * 26 25 4 43 43 H 1.08994 * 109.47414 * 324.12422 * 26 25 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 6 2.2759 1.0899 0.0000 4 6 3.6379 0.8427 -0.0045 5 16 4.8356 2.1352 -0.0117 6 8 5.7792 1.8022 -1.0207 7 8 4.1086 3.3560 0.0003 8 7 5.6466 2.0598 1.4302 9 6 5.0821 2.6972 2.6224 10 6 4.3065 1.6785 3.4171 11 1 4.2409 0.6582 3.0692 12 6 3.6813 2.0488 4.5889 13 7 3.0040 1.1599 5.2822 14 14 3.7953 3.8134 5.1910 15 1 2.6675 4.6011 4.6315 16 1 3.7269 3.8357 6.6742 17 1 5.0820 4.4062 4.7458 18 6 6.9286 1.3556 1.5135 19 6 8.0558 2.3503 1.4087 20 6 8.5901 2.6782 0.1716 21 6 9.6229 3.6016 0.1229 22 6 10.0898 4.1528 1.3013 23 7 9.5610 3.8136 2.4605 24 6 8.5736 2.9433 2.5443 25 6 3.9750 -0.4478 0.0026 26 6 5.3860 -0.9771 0.0050 27 16 2.5209 -1.4372 0.0079 28 1 -0.3634 -1.0276 0.0061 29 1 -0.3634 0.5191 0.8869 30 1 -0.3634 0.5085 -0.8930 31 1 1.8669 2.0894 -0.0006 32 1 5.8886 3.0992 3.2358 33 1 4.4168 3.5064 2.3212 34 1 2.5639 1.4205 6.1063 35 1 6.9940 0.8316 2.4670 36 1 7.0018 0.6363 0.6978 37 1 8.2079 2.2279 -0.7325 38 1 10.0604 3.8832 -0.8236 39 1 10.8970 4.8699 1.2722 40 1 8.1656 2.6905 3.5117 41 1 5.7634 -1.0004 1.0274 42 1 5.3965 -1.9852 -0.4092 43 1 6.0184 -0.3285 -0.6010 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000040464622.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:46:49 Heat of formation + Delta-G solvation = -3.739245 kcal Electronic energy + Delta-G solvation = -29584.331001 eV Core-core repulsion = 25655.449295 eV Total energy + Delta-G solvation = -3928.881705 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 366.086 amu Computer time = 1.29 seconds Orbital eigenvalues (eV) -39.99390 -37.90054 -36.92288 -36.22213 -35.41240 -32.98296 -32.92902 -32.08206 -31.21802 -29.44553 -28.10392 -25.61098 -24.77221 -23.41620 -23.15928 -22.30978 -21.48066 -19.43007 -18.06529 -17.32734 -17.06508 -16.94981 -16.74889 -16.13818 -16.01522 -15.53269 -15.05287 -14.43974 -14.18195 -14.11068 -13.81254 -13.44847 -13.40474 -13.24207 -13.10356 -12.89949 -12.82036 -12.59793 -12.42995 -12.18436 -12.11051 -11.85945 -11.68177 -11.62852 -11.53636 -11.39408 -11.21552 -10.90407 -10.86693 -10.54822 -10.28344 -10.23376 -9.68834 -9.61644 -9.28491 -8.87527 -8.68660 -8.58486 -8.26051 -8.19860 -6.18846 -4.19876 0.74096 1.03671 1.28475 1.45944 1.78576 2.09178 2.56886 3.24541 3.31302 3.35722 3.53537 3.99804 4.19483 4.32391 4.60873 4.72032 4.82939 4.93387 5.03786 5.09629 5.12858 5.16489 5.24732 5.27614 5.39555 5.41038 5.56096 5.65375 5.69566 5.74142 5.88547 5.92037 5.99675 6.08337 6.13143 6.17600 6.29964 6.39132 6.50194 6.63335 6.76660 6.87834 6.97645 7.19981 7.47216 8.13329 8.35799 8.84498 9.41406 10.93340 Molecular weight = 366.09amu Principal moments of inertia in cm(-1) A = 0.008854 B = 0.005104 C = 0.003752 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3161.564938 B = 5484.190880 C = 7461.044197 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.078 4.078 2 C -0.189 4.189 3 C -0.062 4.062 4 C -0.666 4.666 5 S 2.707 3.293 6 O -0.974 6.974 7 O -0.959 6.959 8 N -0.970 5.970 9 C 0.214 3.786 10 C -0.541 4.541 11 H 0.081 0.919 12 C 0.080 3.920 13 N -0.891 5.891 14 Si 0.863 3.137 15 H -0.272 1.272 16 H -0.284 1.284 17 H -0.261 1.261 18 C 0.163 3.837 19 C -0.151 4.151 20 C -0.066 4.066 21 C -0.180 4.180 22 C 0.092 3.908 23 N -0.490 5.490 24 C 0.118 3.882 25 C -0.052 4.052 26 C -0.131 4.131 27 S 0.121 5.879 28 H 0.064 0.936 29 H 0.079 0.921 30 H 0.074 0.926 31 H 0.150 0.850 32 H 0.041 0.959 33 H 0.043 0.957 34 H 0.265 0.735 35 H 0.100 0.900 36 H 0.089 0.911 37 H 0.146 0.854 38 H 0.132 0.868 39 H 0.151 0.849 40 H 0.160 0.840 41 H 0.097 0.903 42 H 0.081 0.919 43 H 0.104 0.896 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.252 -3.501 -11.541 13.155 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 C -0.307 4.307 3 C -0.091 4.091 4 C -0.765 4.765 5 S 2.796 3.204 6 O -0.964 6.964 7 O -0.950 6.950 8 N -0.807 5.807 9 C 0.091 3.909 10 C -0.580 4.580 11 H 0.099 0.901 12 C -0.123 4.123 13 N -0.528 5.528 14 Si 0.689 3.311 15 H -0.198 1.198 16 H -0.209 1.209 17 H -0.186 1.186 18 C 0.037 3.963 19 C -0.155 4.155 20 C -0.093 4.093 21 C -0.200 4.200 22 C -0.066 4.066 23 N -0.198 5.198 24 C -0.039 4.039 25 C -0.172 4.172 26 C -0.189 4.189 27 S 0.385 5.615 28 H 0.083 0.917 29 H 0.098 0.902 30 H 0.092 0.908 31 H 0.168 0.832 32 H 0.059 0.941 33 H 0.061 0.939 34 H 0.075 0.925 35 H 0.118 0.882 36 H 0.108 0.892 37 H 0.164 0.836 38 H 0.150 0.850 39 H 0.168 0.832 40 H 0.177 0.823 41 H 0.116 0.884 42 H 0.100 0.900 43 H 0.123 0.877 Dipole moment (debyes) X Y Z Total from point charges 5.247 -4.124 -11.242 13.074 hybrid contribution -0.681 1.415 0.181 1.581 sum 4.566 -2.709 -11.061 12.269 Atomic orbital electron populations 1.20292 0.87700 1.02551 1.03123 1.24352 0.99795 0.95009 1.11524 1.19446 0.90080 1.00070 0.99465 1.29751 1.12876 1.13291 1.20598 1.01428 0.72890 0.73531 0.72530 1.93466 1.61103 1.85336 1.56517 1.93521 1.73514 1.41641 1.86317 1.57198 1.28380 1.67931 1.27192 1.19664 0.94724 0.93901 0.82596 1.21375 1.32047 0.97620 1.06947 0.90055 1.24797 0.94390 0.96930 0.96222 1.69884 1.33158 1.33957 1.15812 0.87048 0.79776 0.85848 0.78424 1.19763 1.20943 1.18566 1.20219 0.79640 0.91756 1.04720 1.21418 0.98774 1.00941 0.94325 1.21840 0.93985 0.95071 0.98369 1.22122 0.98880 0.99097 0.99899 1.22735 0.98219 0.97617 0.87978 1.67725 1.10220 1.13271 1.28607 1.22844 0.91210 0.91027 0.98840 1.24188 0.99599 0.95003 0.98438 1.21173 0.89878 1.03030 1.04853 1.83881 0.96406 1.10065 1.71169 0.91715 0.90189 0.90756 0.83221 0.94094 0.93911 0.92492 0.88191 0.89246 0.83625 0.85037 0.83205 0.82302 0.88428 0.89964 0.87725 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -0.98 10.38 36.00 0.37 -0.61 16 2 C -0.19 -3.06 6.51 -36.01 -0.23 -3.29 16 3 C -0.06 -1.14 9.57 -41.21 -0.39 -1.53 16 4 C -0.67 -12.21 5.84 -41.21 -0.24 -12.45 16 5 S 2.71 51.35 5.26 -107.50 -0.57 50.79 16 6 O -0.97 -17.23 13.74 -57.17 -0.79 -18.02 16 7 O -0.96 -21.07 16.05 -57.17 -0.92 -21.99 16 8 N -0.97 -18.21 2.76 -116.95 -0.32 -18.53 16 9 C 0.21 4.75 4.50 -5.20 -0.02 4.73 16 10 C -0.54 -13.75 9.94 -34.44 -0.34 -14.09 16 11 H 0.08 2.20 8.06 -52.49 -0.42 1.78 16 12 C 0.08 2.16 5.47 -17.82 -0.10 2.06 16 13 N -0.89 -25.51 13.96 55.43 0.77 -24.74 16 14 Si 0.86 20.47 27.47 -169.99 -4.67 15.80 16 15 H -0.27 -6.51 7.11 56.52 0.40 -6.10 16 16 H -0.28 -6.70 7.11 56.52 0.40 -6.29 16 17 H -0.26 -5.92 6.54 56.52 0.37 -5.56 16 18 C 0.16 2.50 4.81 -5.19 -0.02 2.47 16 19 C -0.15 -2.28 5.45 -104.48 -0.57 -2.85 16 20 C -0.07 -0.92 9.79 -39.27 -0.38 -1.30 16 21 C -0.18 -2.21 10.11 -39.44 -0.40 -2.61 16 22 C 0.09 1.19 11.18 -17.55 -0.20 0.99 16 23 N -0.49 -7.66 10.36 -13.26 -0.14 -7.80 16 24 C 0.12 1.86 10.36 -17.55 -0.18 1.68 16 25 C -0.05 -0.84 6.49 -36.00 -0.23 -1.07 16 26 C -0.13 -1.69 8.60 36.00 0.31 -1.38 16 27 S 0.12 1.80 23.31 -107.50 -2.51 -0.70 16 28 H 0.06 0.70 8.14 -51.93 -0.42 0.28 16 29 H 0.08 1.03 8.14 -51.93 -0.42 0.61 16 30 H 0.07 0.79 8.14 -51.93 -0.42 0.37 16 31 H 0.15 2.68 7.74 -52.49 -0.41 2.28 16 32 H 0.04 0.88 6.44 -51.92 -0.33 0.55 16 33 H 0.04 1.01 6.44 -51.93 -0.33 0.68 16 34 H 0.27 7.20 8.31 -40.82 -0.34 6.86 16 35 H 0.10 1.47 8.08 -51.93 -0.42 1.05 16 36 H 0.09 1.16 4.43 -51.93 -0.23 0.93 16 37 H 0.15 1.93 7.07 -52.49 -0.37 1.56 16 38 H 0.13 1.21 8.06 -52.49 -0.42 0.79 16 39 H 0.15 1.46 8.06 -52.48 -0.42 1.04 16 40 H 0.16 2.43 7.85 -52.49 -0.41 2.01 16 41 H 0.10 1.21 7.23 -51.93 -0.38 0.83 16 42 H 0.08 0.84 8.14 -51.93 -0.42 0.42 16 43 H 0.10 1.32 4.90 -51.93 -0.25 1.06 16 LS Contribution 377.88 15.07 5.69 5.69 Total: -1.00 -32.26 377.88 -11.34 -43.60 By element: Atomic # 1 Polarization: 10.41 SS G_CDS: -5.26 Total: 5.15 kcal Atomic # 6 Polarization: -26.62 SS G_CDS: -2.64 Total: -29.26 kcal Atomic # 7 Polarization: -51.38 SS G_CDS: 0.31 Total: -51.06 kcal Atomic # 8 Polarization: -38.30 SS G_CDS: -1.70 Total: -40.00 kcal Atomic # 14 Polarization: 20.47 SS G_CDS: -4.67 Total: 15.80 kcal Atomic # 16 Polarization: 53.16 SS G_CDS: -3.07 Total: 50.08 kcal Total LS contribution 5.69 Total: 5.69 kcal Total: -32.26 -11.34 -43.60 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000040464622.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 39.862 kcal (2) G-P(sol) polarization free energy of solvation -32.263 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 7.599 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.338 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.601 kcal (6) G-S(sol) free energy of system = (1) + (5) -3.739 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.29 seconds