Wall clock time and date at job start Tue Mar 31 2020 07:46:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50694 * 1 3 3 C 1.33383 * 125.20272 * 2 1 4 4 C 1.38430 * 114.91792 * 180.20591 * 3 2 1 5 5 S 1.76205 * 122.53652 * 179.75644 * 4 3 2 6 6 O 1.42104 * 106.40241 * 227.57224 * 5 4 3 7 7 O 1.42094 * 106.40398 * 0.49649 * 5 4 3 8 8 N 1.65607 * 107.21428 * 114.03569 * 5 4 3 9 9 C 1.46500 * 119.99869 * 276.52795 * 8 5 4 10 10 C 1.50693 * 109.47173 * 95.00153 * 9 8 5 11 11 H 1.07998 * 120.00043 * 0.02562 * 10 9 8 12 12 C 1.37879 * 119.99961 * 179.97438 * 10 9 8 13 13 N 1.31516 * 119.99998 * 179.97438 * 12 10 9 14 14 Si 1.86796 * 120.00073 * 0.02562 * 12 10 9 15 15 H 1.48506 * 109.47040 * 89.99465 * 14 12 10 16 16 H 1.48495 * 109.47227 * 209.99602 * 14 12 10 17 17 H 1.48504 * 109.47114 * 329.99619 * 14 12 10 18 18 C 1.46502 * 119.99705 * 96.52787 * 8 5 4 19 19 C 1.50702 * 109.46931 * 97.67518 * 18 8 5 20 20 C 1.38685 * 120.41469 * 269.71768 * 19 18 8 21 21 C 1.38629 * 118.41510 * 179.78365 * 20 19 18 22 22 C 1.38219 * 119.16452 * 0.51393 * 21 20 19 23 23 N 1.31857 * 120.76309 * 359.72562 * 22 21 20 24 24 C 1.31883 * 121.72626 * 359.97438 * 23 22 21 25 25 C 1.33388 * 114.92219 * 359.49116 * 4 3 2 26 26 C 1.50697 * 125.20292 * 180.24765 * 25 4 3 27 27 S 1.75881 * 109.59218 * 0.26939 * 25 4 3 28 28 H 1.09002 * 109.47529 * 180.33800 * 1 2 3 29 29 H 1.09002 * 109.47348 * 300.34060 * 1 2 3 30 30 H 1.09000 * 109.47400 * 60.34076 * 1 2 3 31 31 H 1.07997 * 122.54381 * 359.96211 * 3 2 1 32 32 H 1.09008 * 109.46689 * 215.00297 * 9 8 5 33 33 H 1.09003 * 109.47264 * 334.99663 * 9 8 5 34 34 H 0.96996 * 120.00006 * 180.02562 * 13 12 10 35 35 H 1.08997 * 109.47120 * 217.67043 * 18 8 5 36 36 H 1.09000 * 109.47323 * 337.67471 * 18 8 5 37 37 H 1.07997 * 120.78930 * 0.02562 * 20 19 18 38 38 H 1.08000 * 120.41502 * 180.21724 * 21 20 19 39 39 H 1.08004 * 119.62101 * 179.74988 * 22 21 20 40 40 H 1.08000 * 119.61777 * 180.02562 * 24 23 22 41 41 H 1.09004 * 109.46595 * 84.11806 * 26 25 4 42 42 H 1.08994 * 109.47033 * 204.11532 * 26 25 4 43 43 H 1.08994 * 109.47414 * 324.12422 * 26 25 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 6 2.2759 1.0899 0.0000 4 6 3.6379 0.8427 -0.0045 5 16 4.8356 2.1352 -0.0117 6 8 5.7792 1.8022 -1.0207 7 8 4.1086 3.3560 0.0003 8 7 5.6466 2.0598 1.4302 9 6 5.0821 2.6972 2.6224 10 6 4.3065 1.6785 3.4171 11 1 4.2409 0.6582 3.0692 12 6 3.6813 2.0488 4.5889 13 7 3.0040 1.1599 5.2822 14 14 3.7953 3.8134 5.1910 15 1 2.6675 4.6011 4.6315 16 1 3.7269 3.8357 6.6742 17 1 5.0820 4.4062 4.7458 18 6 6.9286 1.3556 1.5135 19 6 8.0558 2.3503 1.4087 20 6 8.5901 2.6782 0.1716 21 6 9.6229 3.6016 0.1229 22 6 10.0898 4.1528 1.3013 23 7 9.5610 3.8136 2.4605 24 6 8.5736 2.9433 2.5443 25 6 3.9750 -0.4478 0.0026 26 6 5.3860 -0.9771 0.0050 27 16 2.5209 -1.4372 0.0079 28 1 -0.3634 -1.0276 0.0061 29 1 -0.3634 0.5191 0.8869 30 1 -0.3634 0.5085 -0.8930 31 1 1.8669 2.0894 -0.0006 32 1 5.8886 3.0992 3.2358 33 1 4.4168 3.5064 2.3212 34 1 2.5639 1.4205 6.1063 35 1 6.9940 0.8316 2.4670 36 1 7.0018 0.6363 0.6978 37 1 8.2079 2.2279 -0.7325 38 1 10.0604 3.8832 -0.8236 39 1 10.8970 4.8699 1.2722 40 1 8.1656 2.6905 3.5117 41 1 5.7634 -1.0004 1.0274 42 1 5.3965 -1.9852 -0.4092 43 1 6.0184 -0.3285 -0.6010 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000040464622.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:46:48 Heat of formation + Delta-G solvation = -23.931170 kcal Electronic energy + Delta-G solvation = -29585.206588 eV Core-core repulsion = 25655.449295 eV Total energy + Delta-G solvation = -3929.757293 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 366.086 amu Computer time = 1.14 seconds Orbital eigenvalues (eV) -41.08262 -39.17456 -38.42332 -37.69945 -36.94890 -34.74879 -34.13375 -33.40191 -32.42129 -30.56429 -29.77677 -26.98303 -25.97544 -24.59890 -24.40855 -23.88318 -22.78465 -20.76085 -19.52907 -18.98867 -18.72248 -18.23924 -17.87100 -17.54350 -17.21557 -16.96098 -16.26729 -16.10714 -15.69961 -15.32535 -15.10048 -14.72601 -14.54223 -14.40803 -14.34710 -14.18993 -14.05832 -14.01383 -13.88114 -13.59550 -13.34167 -13.29324 -13.19620 -13.11862 -12.90534 -12.75383 -12.67067 -12.37451 -12.23712 -12.11254 -11.98069 -11.66488 -11.58240 -10.77680 -10.71555 -10.41542 -9.96604 -9.93242 -9.71377 -9.45413 -8.27209 -6.29728 -0.67190 -0.25219 0.19692 0.38052 0.55535 0.81359 1.20895 1.34540 1.38980 1.45072 2.09226 2.33950 2.69145 2.93690 3.07981 3.35768 3.58421 3.64766 3.77452 3.90820 3.93980 4.09887 4.17113 4.19819 4.28482 4.39757 4.53042 4.57059 4.60726 4.67846 4.68984 4.80103 4.87943 4.89417 4.94082 4.97331 5.06910 5.14264 5.22654 5.26363 5.35781 5.44370 5.46651 5.66349 5.83881 6.31054 6.75593 7.06021 7.33867 8.87726 Molecular weight = 366.09amu Principal moments of inertia in cm(-1) A = 0.008854 B = 0.005104 C = 0.003752 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3161.564938 B = 5484.190880 C = 7461.044197 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.080 4.080 2 C -0.197 4.197 3 C -0.099 4.099 4 C -0.692 4.692 5 S 2.714 3.286 6 O -0.964 6.964 7 O -0.996 6.996 8 N -0.971 5.971 9 C 0.224 3.776 10 C -0.526 4.526 11 H 0.059 0.941 12 C 0.031 3.969 13 N -0.933 5.933 14 Si 0.910 3.090 15 H -0.276 1.276 16 H -0.280 1.280 17 H -0.245 1.245 18 C 0.158 3.842 19 C -0.161 4.161 20 C -0.075 4.075 21 C -0.171 4.171 22 C 0.088 3.912 23 N -0.514 5.514 24 C 0.100 3.900 25 C -0.060 4.060 26 C -0.137 4.137 27 S 0.164 5.836 28 H 0.084 0.916 29 H 0.074 0.926 30 H 0.094 0.906 31 H 0.139 0.861 32 H 0.050 0.950 33 H 0.029 0.971 34 H 0.265 0.735 35 H 0.101 0.899 36 H 0.113 0.887 37 H 0.152 0.848 38 H 0.168 0.832 39 H 0.183 0.817 40 H 0.153 0.847 41 H 0.103 0.897 42 H 0.113 0.887 43 H 0.108 0.892 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.666 -3.846 -12.961 15.074 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.139 4.139 2 C -0.314 4.314 3 C -0.127 4.127 4 C -0.792 4.792 5 S 2.805 3.195 6 O -0.954 6.954 7 O -0.987 6.987 8 N -0.808 5.808 9 C 0.099 3.901 10 C -0.566 4.566 11 H 0.077 0.923 12 C -0.169 4.169 13 N -0.573 5.573 14 Si 0.734 3.266 15 H -0.201 1.201 16 H -0.206 1.206 17 H -0.168 1.168 18 C 0.033 3.967 19 C -0.165 4.165 20 C -0.102 4.102 21 C -0.190 4.190 22 C -0.069 4.069 23 N -0.223 5.223 24 C -0.057 4.057 25 C -0.181 4.181 26 C -0.195 4.195 27 S 0.428 5.572 28 H 0.103 0.897 29 H 0.093 0.907 30 H 0.113 0.887 31 H 0.157 0.843 32 H 0.068 0.932 33 H 0.047 0.953 34 H 0.074 0.926 35 H 0.119 0.881 36 H 0.131 0.869 37 H 0.170 0.830 38 H 0.185 0.815 39 H 0.200 0.800 40 H 0.170 0.830 41 H 0.121 0.879 42 H 0.132 0.868 43 H 0.126 0.874 Dipole moment (debyes) X Y Z Total from point charges 6.699 -4.455 -12.678 15.015 hybrid contribution -1.082 1.419 0.513 1.857 sum 5.617 -3.036 -12.165 13.739 Atomic orbital electron populations 1.20438 0.85474 1.04111 1.03851 1.24871 1.01642 0.95170 1.09765 1.19565 0.90746 1.00456 1.01925 1.29614 1.12676 1.13874 1.23075 1.01030 0.72745 0.73156 0.72530 1.93461 1.60827 1.85159 1.55961 1.93468 1.74366 1.43997 1.86851 1.57099 1.29600 1.68288 1.25802 1.19344 0.94448 0.92763 0.83526 1.21548 1.31193 0.97258 1.06569 0.92326 1.25461 0.94521 1.00144 0.96775 1.69993 1.34946 1.35776 1.16588 0.86272 0.80290 0.81950 0.78041 1.20137 1.20567 1.16814 1.20457 0.78281 0.92143 1.05834 1.21349 0.98960 1.01328 0.94851 1.22043 0.94556 0.95618 0.97976 1.22509 0.97695 0.97572 1.01255 1.23340 0.98472 0.97648 0.87422 1.67721 1.10602 1.13685 1.30261 1.22825 0.92033 0.91913 0.98927 1.24712 1.01743 0.94767 0.96853 1.21367 0.87882 1.04783 1.05474 1.83658 0.95035 1.08581 1.69961 0.89694 0.90742 0.88711 0.84313 0.93183 0.95322 0.92552 0.88081 0.86882 0.83009 0.81489 0.79973 0.82994 0.87921 0.86830 0.87369 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -1.94 10.38 71.23 0.74 -1.20 16 2 C -0.20 -6.28 6.51 24.58 0.16 -6.12 16 3 C -0.10 -3.69 9.57 21.22 0.20 -3.49 16 4 C -0.69 -25.51 5.84 21.22 0.12 -25.39 16 5 S 2.71 103.33 5.26 -56.49 -0.30 103.03 16 6 O -0.96 -33.16 13.74 -128.00 -1.76 -34.92 16 7 O -1.00 -44.88 16.05 -128.00 -2.05 -46.94 16 8 N -0.97 -36.43 2.76 -523.91 -1.44 -37.87 16 9 C 0.22 10.01 4.50 85.63 0.39 10.40 16 10 C -0.53 -27.24 9.94 25.60 0.25 -26.98 16 11 H 0.06 3.25 8.06 -2.91 -0.02 3.23 16 12 C 0.03 1.66 5.47 84.65 0.46 2.13 16 13 N -0.93 -54.57 13.96 21.45 0.30 -54.27 16 14 Si 0.91 42.39 27.47 68.60 1.88 44.27 16 15 H -0.28 -12.93 7.11 99.48 0.71 -12.23 16 16 H -0.28 -12.81 7.11 99.48 0.71 -12.10 16 17 H -0.24 -10.63 6.54 99.48 0.65 -9.98 16 18 C 0.16 4.73 4.81 85.63 0.41 5.14 16 19 C -0.16 -4.70 5.45 -19.77 -0.11 -4.81 16 20 C -0.08 -1.94 9.79 22.47 0.22 -1.72 16 21 C -0.17 -3.66 10.11 22.36 0.23 -3.44 16 22 C 0.09 2.05 11.18 84.68 0.95 3.00 16 23 N -0.51 -15.40 10.36 -195.85 -2.03 -17.43 16 24 C 0.10 3.09 10.36 84.67 0.88 3.96 16 25 C -0.06 -1.88 6.49 24.59 0.16 -1.72 16 26 C -0.14 -3.26 8.60 71.23 0.61 -2.65 16 27 S 0.16 4.65 23.31 -56.49 -1.32 3.33 16 28 H 0.08 1.68 8.14 -2.39 -0.02 1.66 16 29 H 0.07 1.89 8.14 -2.39 -0.02 1.88 16 30 H 0.09 1.89 8.14 -2.39 -0.02 1.87 16 31 H 0.14 5.28 7.74 -2.91 -0.02 5.26 16 32 H 0.05 2.16 6.44 -2.38 -0.02 2.14 16 33 H 0.03 1.38 6.44 -2.39 -0.02 1.36 16 34 H 0.27 14.73 8.31 -92.71 -0.77 13.95 16 35 H 0.10 2.97 8.08 -2.39 -0.02 2.95 16 36 H 0.11 2.78 4.43 -2.39 -0.01 2.77 16 37 H 0.15 3.67 7.07 -2.91 -0.02 3.65 16 38 H 0.17 2.34 8.06 -2.91 -0.02 2.32 16 39 H 0.18 2.90 8.06 -2.91 -0.02 2.88 16 40 H 0.15 4.71 7.85 -2.91 -0.02 4.69 16 41 H 0.10 2.38 7.23 -2.38 -0.02 2.36 16 42 H 0.11 1.96 8.14 -2.39 -0.02 1.94 16 43 H 0.11 2.50 4.90 -2.39 -0.01 2.49 16 Total: -1.00 -70.55 377.88 -0.05 -70.60 By element: Atomic # 1 Polarization: 22.09 SS G_CDS: 0.99 Total: 23.08 kcal Atomic # 6 Polarization: -58.56 SS G_CDS: 5.68 Total: -52.88 kcal Atomic # 7 Polarization: -106.40 SS G_CDS: -3.17 Total: -109.57 kcal Atomic # 8 Polarization: -78.04 SS G_CDS: -3.81 Total: -81.86 kcal Atomic # 14 Polarization: 42.39 SS G_CDS: 1.88 Total: 44.27 kcal Atomic # 16 Polarization: 107.97 SS G_CDS: -1.61 Total: 106.36 kcal Total: -70.55 -0.05 -70.60 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000040464622.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 46.669 kcal (2) G-P(sol) polarization free energy of solvation -70.549 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -23.880 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.051 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.600 kcal (6) G-S(sol) free energy of system = (1) + (5) -23.931 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.14 seconds