Wall clock time and date at job start Tue Mar 31 2020 07:29:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31511 * 1 3 3 Si 1.86804 * 120.00249 * 2 1 4 4 H 1.48502 * 109.47168 * 270.00175 * 3 2 1 5 5 H 1.48501 * 109.47088 * 30.00395 * 3 2 1 6 6 H 1.48502 * 109.47130 * 149.99874 * 3 2 1 7 7 C 1.37880 * 119.99802 * 180.02562 * 2 1 3 8 8 H 1.07995 * 120.00362 * 359.97438 * 7 2 1 9 9 C 1.50702 * 119.99673 * 179.97438 * 7 2 1 10 10 N 1.46907 * 109.46797 * 184.24161 * 9 7 2 11 11 C 1.46901 * 110.99686 * 300.05126 * 10 9 7 12 12 C 1.50704 * 109.47041 * 287.64940 * 11 10 9 13 13 C 1.33358 * 125.19651 * 93.73886 * 12 11 10 14 14 C 1.38448 * 114.93063 * 179.97438 * 13 12 11 15 15 C 1.33475 * 114.89467 * 0.02562 * 14 13 12 16 16 Br 1.89103 * 125.21065 * 179.97438 * 15 14 13 17 17 S 1.75883 * 109.58520 * 359.73322 * 15 14 13 18 18 C 1.46894 * 111.00051 * 64.00457 * 10 9 7 19 19 C 1.50697 * 109.47131 * 66.04865 * 18 10 9 20 20 C 1.38671 * 120.41961 * 89.99932 * 19 18 10 21 21 C 1.38629 * 118.42012 * 179.97438 * 20 19 18 22 22 C 1.38230 * 119.16393 * 0.25001 * 21 20 19 23 23 N 1.31857 * 120.75725 * 359.50322 * 22 21 20 24 24 C 1.31878 * 121.73011 * 0.48522 * 23 22 21 25 25 H 0.97003 * 119.99386 * 359.97438 * 1 2 3 26 26 H 1.08995 * 109.47473 * 64.24267 * 9 7 2 27 27 H 1.08999 * 109.46970 * 304.23572 * 9 7 2 28 28 H 1.08994 * 109.47318 * 47.64649 * 11 10 9 29 29 H 1.08999 * 109.46763 * 167.65056 * 11 10 9 30 30 H 1.08002 * 122.53423 * 359.97438 * 13 12 11 31 31 H 1.07999 * 122.55781 * 179.97438 * 14 13 12 32 32 H 1.08996 * 109.47489 * 306.04668 * 18 10 9 33 33 H 1.09003 * 109.47074 * 186.04808 * 18 10 9 34 34 H 1.07996 * 120.79290 * 359.95468 * 20 19 18 35 35 H 1.08005 * 120.42310 * 179.97438 * 21 20 19 36 36 H 1.07994 * 119.61810 * 179.74855 * 22 21 20 37 37 H 1.08004 * 119.62184 * 179.75586 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.4967 2.0464 -1.4001 5 1 1.4467 2.6527 0.7001 6 1 3.5468 1.4401 0.7001 7 6 2.0045 -1.1941 -0.0005 8 1 1.4645 -2.1294 -0.0005 9 6 3.5115 -1.1941 -0.0011 10 7 4.0011 -2.5753 -0.1041 11 6 3.5294 -3.3866 1.0262 12 6 4.2665 -2.9822 2.2769 13 6 3.8392 -2.0829 3.1641 14 6 4.6871 -1.8747 4.2386 15 6 5.8040 -2.6055 4.2229 16 35 7.1598 -2.5532 5.5400 17 16 5.8183 -3.6296 2.7931 18 6 3.6094 -3.1786 -1.3848 19 6 4.3106 -2.4648 -2.5117 20 6 5.5506 -2.8998 -2.9545 21 6 6.1581 -2.2128 -3.9941 22 6 5.5146 -1.1217 -4.5474 23 7 4.3333 -0.7392 -4.1038 24 6 3.7257 -1.3690 -3.1171 25 1 -0.4849 0.8401 0.0004 26 1 3.8752 -0.7477 0.9243 27 1 3.8744 -0.6157 -0.8507 28 1 2.4605 -3.2270 1.1669 29 1 3.7155 -4.4405 0.8195 30 1 2.9026 -1.5569 3.0529 31 1 4.4625 -1.1737 5.0289 32 1 2.5307 -3.0895 -1.5137 33 1 3.8902 -4.2318 -1.3913 34 1 6.0318 -3.7531 -2.5001 35 1 7.1241 -2.5235 -4.3642 36 1 5.9830 -0.5788 -5.3549 37 1 2.7600 -1.0240 -2.7781 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) Br: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000043677532.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:29:31 Heat of formation + Delta-G solvation = 79.688909 kcal Electronic energy + Delta-G solvation = -22052.357380 eV Core-core repulsion = 18774.788904 eV Total energy + Delta-G solvation = -3277.568476 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 366.010 amu Computer time = 3.41 seconds Orbital eigenvalues (eV) -39.87056 -38.12783 -36.62279 -32.78333 -32.50135 -31.76858 -31.13146 -29.25185 -27.89007 -25.74344 -24.21462 -23.19006 -22.83022 -21.83668 -19.87367 -18.91803 -17.24990 -16.75711 -16.62677 -15.94760 -15.29934 -15.15914 -14.90882 -14.38549 -14.16992 -13.38361 -13.20255 -12.99455 -12.74791 -12.70687 -12.56779 -12.44443 -12.27516 -11.64250 -11.41854 -11.19367 -11.09540 -10.90773 -10.67776 -10.63124 -10.35742 -10.23510 -10.03781 -9.66998 -9.44946 -9.04687 -8.71067 -8.62766 -8.33795 -8.23939 -7.42605 -6.22248 -4.23414 0.99567 1.22592 1.47960 1.64948 1.95202 2.16849 2.91198 3.23960 3.32195 3.37010 4.14437 4.31811 4.78287 4.89234 5.09058 5.12071 5.24542 5.30195 5.33675 5.46094 5.49169 5.62971 5.76949 5.79362 5.89291 6.21064 6.24169 6.28587 6.37945 6.42358 6.56430 6.67034 6.72547 6.76224 7.01639 7.12187 7.39741 7.80454 7.81184 8.29365 8.37174 8.77384 9.40935 10.89507 Molecular weight = 366.01amu Principal moments of inertia in cm(-1) A = 0.010463 B = 0.003452 C = 0.002911 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2675.580313 B = 8109.752415 C = 9617.201658 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.892 5.892 2 C 0.082 3.918 3 Si 0.864 3.136 4 H -0.271 1.271 5 H -0.286 1.286 6 H -0.264 1.264 7 C -0.555 4.555 8 H 0.077 0.923 9 C 0.148 3.852 10 N -0.525 5.525 11 C 0.118 3.882 12 C -0.116 4.116 13 C -0.139 4.139 14 C -0.080 4.080 15 C -0.222 4.222 16 Br -0.011 7.011 17 S 0.142 5.858 18 C 0.098 3.902 19 C -0.111 4.111 20 C -0.065 4.065 21 C -0.184 4.184 22 C 0.084 3.916 23 N -0.491 5.491 24 C 0.118 3.882 25 H 0.265 0.735 26 H 0.033 0.967 27 H 0.029 0.971 28 H 0.084 0.916 29 H 0.069 0.931 30 H 0.156 0.844 31 H 0.142 0.858 32 H 0.067 0.933 33 H 0.067 0.933 34 H 0.129 0.871 35 H 0.127 0.873 36 H 0.147 0.853 37 H 0.166 0.834 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 13.350 -8.190 4.937 16.421 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.529 5.529 2 C -0.122 4.122 3 Si 0.691 3.309 4 H -0.197 1.197 5 H -0.212 1.212 6 H -0.189 1.189 7 C -0.593 4.593 8 H 0.095 0.905 9 C 0.022 3.978 10 N -0.248 5.248 11 C -0.012 4.012 12 C -0.236 4.236 13 C -0.169 4.169 14 C -0.115 4.115 15 C -0.418 4.418 16 Br 0.072 6.928 17 S 0.405 5.595 18 C -0.030 4.030 19 C -0.113 4.113 20 C -0.091 4.091 21 C -0.204 4.204 22 C -0.073 4.073 23 N -0.199 5.199 24 C -0.039 4.039 25 H 0.075 0.925 26 H 0.051 0.949 27 H 0.047 0.953 28 H 0.102 0.898 29 H 0.087 0.913 30 H 0.173 0.827 31 H 0.160 0.840 32 H 0.085 0.915 33 H 0.085 0.915 34 H 0.147 0.853 35 H 0.145 0.855 36 H 0.164 0.836 37 H 0.183 0.817 Dipole moment (debyes) X Y Z Total from point charges 14.814 -8.401 4.472 17.608 hybrid contribution -1.263 1.478 0.724 2.075 sum 13.551 -6.923 5.197 16.080 Atomic orbital electron populations 1.69902 1.06272 1.27187 1.49542 1.24849 0.94520 0.98872 0.93919 0.87009 0.80588 0.84101 0.79219 1.19660 1.21219 1.18862 1.21538 0.90243 0.94547 1.52971 0.90476 1.20300 0.94717 0.85383 0.97442 1.62504 1.58733 1.04140 0.99424 1.20568 0.98164 0.95927 0.86529 1.24685 0.97087 1.01261 1.00539 1.20269 1.02689 1.00096 0.93859 1.20214 0.92316 0.99263 0.99686 1.25895 1.01383 1.11579 1.02951 1.96612 1.47861 1.98396 1.49910 1.84104 1.20064 1.40770 1.14565 1.20866 0.98942 0.95861 0.87312 1.20808 0.95495 0.97413 0.97582 1.21425 0.93925 0.98996 0.94761 1.22019 1.01365 0.98218 0.98816 1.22671 0.91546 0.94450 0.98636 1.67748 1.09655 1.30090 1.12401 1.23083 1.00018 0.90725 0.90043 0.92508 0.94924 0.95347 0.89839 0.91288 0.82675 0.84020 0.91536 0.91463 0.85325 0.85536 0.83596 0.81694 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -25.19 13.96 55.43 0.77 -24.41 16 2 C 0.08 2.17 5.47 -17.82 -0.10 2.07 16 3 Si 0.86 20.66 27.39 -169.99 -4.66 16.00 16 4 H -0.27 -6.57 7.11 56.52 0.40 -6.17 16 5 H -0.29 -6.87 7.11 56.52 0.40 -6.47 16 6 H -0.26 -6.22 6.67 56.52 0.38 -5.84 16 7 C -0.55 -13.53 7.82 -34.44 -0.27 -13.80 16 8 H 0.08 2.02 6.19 -52.49 -0.33 1.69 16 9 C 0.15 3.21 3.69 -4.97 -0.02 3.19 16 10 N -0.52 -9.52 4.65 -238.97 -1.11 -10.63 16 11 C 0.12 1.95 5.30 -4.97 -0.03 1.92 16 12 C -0.12 -1.88 5.52 -36.01 -0.20 -2.08 16 13 C -0.14 -2.28 9.03 -41.21 -0.37 -2.65 16 14 C -0.08 -1.18 10.11 -41.17 -0.42 -1.60 16 15 C -0.22 -3.17 6.97 29.07 0.20 -2.97 16 16 Br -0.01 -0.14 34.07 -68.01 -2.32 -2.45 16 17 S 0.14 2.02 23.33 -107.50 -2.51 -0.49 16 18 C 0.10 1.63 4.96 -4.98 -0.02 1.61 16 19 C -0.11 -1.85 4.90 -104.48 -0.51 -2.36 16 20 C -0.06 -0.92 9.86 -39.28 -0.39 -1.30 16 21 C -0.18 -2.41 10.11 -39.44 -0.40 -2.81 16 22 C 0.08 1.24 11.18 -17.54 -0.20 1.04 16 23 N -0.49 -8.96 10.36 -13.25 -0.14 -9.09 16 24 C 0.12 2.22 9.09 -17.55 -0.16 2.06 16 25 H 0.27 7.17 8.31 -40.82 -0.34 6.83 16 26 H 0.03 0.75 6.08 -51.93 -0.32 0.44 16 27 H 0.03 0.66 5.09 -51.93 -0.26 0.39 16 28 H 0.08 1.56 6.08 -51.93 -0.32 1.24 16 29 H 0.07 0.98 7.80 -51.93 -0.41 0.57 16 30 H 0.16 2.74 8.06 -52.49 -0.42 2.32 16 31 H 0.14 1.84 8.06 -52.49 -0.42 1.41 16 32 H 0.07 1.23 6.61 -51.93 -0.34 0.89 16 33 H 0.07 0.94 7.81 -51.93 -0.41 0.53 16 34 H 0.13 1.54 8.06 -52.49 -0.42 1.11 16 35 H 0.13 1.25 8.06 -52.48 -0.42 0.82 16 36 H 0.15 1.69 8.06 -52.49 -0.42 1.26 16 37 H 0.17 3.43 7.91 -52.48 -0.42 3.02 16 LS Contribution 340.80 15.07 5.14 5.14 Total: -1.00 -27.81 340.80 -11.76 -39.57 By element: Atomic # 1 Polarization: 8.10 SS G_CDS: -4.06 Total: 4.04 kcal Atomic # 6 Polarization: -14.79 SS G_CDS: -2.87 Total: -17.67 kcal Atomic # 7 Polarization: -43.66 SS G_CDS: -0.47 Total: -44.13 kcal Atomic # 14 Polarization: 20.66 SS G_CDS: -4.66 Total: 16.00 kcal Atomic # 16 Polarization: 2.02 SS G_CDS: -2.51 Total: -0.49 kcal Atomic # 35 Polarization: -0.14 SS G_CDS: -2.32 Total: -2.45 kcal Total LS contribution 5.14 Total: 5.14 kcal Total: -27.81 -11.76 -39.57 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000043677532.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 119.254 kcal (2) G-P(sol) polarization free energy of solvation -27.810 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 91.444 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.756 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.565 kcal (6) G-S(sol) free energy of system = (1) + (5) 79.689 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 3.41 seconds