Wall clock time and date at job start Tue Mar 31 2020 07:29:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31511 * 1 3 3 Si 1.86804 * 120.00249 * 2 1 4 4 H 1.48502 * 109.47168 * 270.00175 * 3 2 1 5 5 H 1.48501 * 109.47088 * 30.00395 * 3 2 1 6 6 H 1.48502 * 109.47130 * 149.99874 * 3 2 1 7 7 C 1.37880 * 119.99802 * 180.02562 * 2 1 3 8 8 H 1.07995 * 120.00362 * 359.97438 * 7 2 1 9 9 C 1.50702 * 119.99673 * 179.97438 * 7 2 1 10 10 N 1.46907 * 109.46797 * 184.24161 * 9 7 2 11 11 C 1.46901 * 110.99686 * 300.05126 * 10 9 7 12 12 C 1.50704 * 109.47041 * 287.64940 * 11 10 9 13 13 C 1.33358 * 125.19651 * 93.73886 * 12 11 10 14 14 C 1.38448 * 114.93063 * 179.97438 * 13 12 11 15 15 C 1.33475 * 114.89467 * 0.02562 * 14 13 12 16 16 Br 1.89103 * 125.21065 * 179.97438 * 15 14 13 17 17 S 1.75883 * 109.58520 * 359.73322 * 15 14 13 18 18 C 1.46894 * 111.00051 * 64.00457 * 10 9 7 19 19 C 1.50697 * 109.47131 * 66.04865 * 18 10 9 20 20 C 1.38671 * 120.41961 * 89.99932 * 19 18 10 21 21 C 1.38629 * 118.42012 * 179.97438 * 20 19 18 22 22 C 1.38230 * 119.16393 * 0.25001 * 21 20 19 23 23 N 1.31857 * 120.75725 * 359.50322 * 22 21 20 24 24 C 1.31878 * 121.73011 * 0.48522 * 23 22 21 25 25 H 0.97003 * 119.99386 * 359.97438 * 1 2 3 26 26 H 1.08995 * 109.47473 * 64.24267 * 9 7 2 27 27 H 1.08999 * 109.46970 * 304.23572 * 9 7 2 28 28 H 1.08994 * 109.47318 * 47.64649 * 11 10 9 29 29 H 1.08999 * 109.46763 * 167.65056 * 11 10 9 30 30 H 1.08002 * 122.53423 * 359.97438 * 13 12 11 31 31 H 1.07999 * 122.55781 * 179.97438 * 14 13 12 32 32 H 1.08996 * 109.47489 * 306.04668 * 18 10 9 33 33 H 1.09003 * 109.47074 * 186.04808 * 18 10 9 34 34 H 1.07996 * 120.79290 * 359.95468 * 20 19 18 35 35 H 1.08005 * 120.42310 * 179.97438 * 21 20 19 36 36 H 1.07994 * 119.61810 * 179.74855 * 22 21 20 37 37 H 1.08004 * 119.62184 * 179.75586 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.4967 2.0464 -1.4001 5 1 1.4467 2.6527 0.7001 6 1 3.5468 1.4401 0.7001 7 6 2.0045 -1.1941 -0.0005 8 1 1.4645 -2.1294 -0.0005 9 6 3.5115 -1.1941 -0.0011 10 7 4.0011 -2.5753 -0.1041 11 6 3.5294 -3.3866 1.0262 12 6 4.2665 -2.9822 2.2769 13 6 3.8392 -2.0829 3.1641 14 6 4.6871 -1.8747 4.2386 15 6 5.8040 -2.6055 4.2229 16 35 7.1598 -2.5532 5.5400 17 16 5.8183 -3.6296 2.7931 18 6 3.6094 -3.1786 -1.3848 19 6 4.3106 -2.4648 -2.5117 20 6 5.5506 -2.8998 -2.9545 21 6 6.1581 -2.2128 -3.9941 22 6 5.5146 -1.1217 -4.5474 23 7 4.3333 -0.7392 -4.1038 24 6 3.7257 -1.3690 -3.1171 25 1 -0.4849 0.8401 0.0004 26 1 3.8752 -0.7477 0.9243 27 1 3.8744 -0.6157 -0.8507 28 1 2.4605 -3.2270 1.1669 29 1 3.7155 -4.4405 0.8195 30 1 2.9026 -1.5569 3.0529 31 1 4.4625 -1.1737 5.0289 32 1 2.5307 -3.0895 -1.5137 33 1 3.8902 -4.2318 -1.3913 34 1 6.0318 -3.7531 -2.5001 35 1 7.1241 -2.5235 -4.3642 36 1 5.9830 -0.5788 -5.3549 37 1 2.7600 -1.0240 -2.7781 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) Br: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000043677532.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:29:31 Heat of formation + Delta-G solvation = 63.792504 kcal Electronic energy + Delta-G solvation = -22053.046700 eV Core-core repulsion = 18774.788904 eV Total energy + Delta-G solvation = -3278.257796 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 366.010 amu Computer time = 3.47 seconds Orbital eigenvalues (eV) -41.11573 -39.43903 -37.98777 -34.64162 -33.85214 -32.96381 -32.30641 -30.67277 -29.50307 -26.99852 -25.80631 -24.44251 -24.15669 -23.11230 -21.42635 -20.20282 -19.07305 -18.04781 -17.81173 -17.23935 -16.63384 -16.58831 -16.32841 -15.93308 -15.75936 -14.64621 -14.50609 -14.47419 -14.20040 -13.95490 -13.86395 -13.74664 -13.54871 -13.34849 -12.96215 -12.82000 -12.45651 -12.38637 -12.19767 -11.91224 -11.81765 -11.71344 -11.62241 -11.28286 -10.78984 -10.62693 -10.27743 -9.88476 -9.50917 -9.39589 -9.00131 -8.31235 -6.31814 -0.19958 0.10287 0.27865 0.48079 0.82989 0.95860 1.28112 1.33538 1.39639 1.67623 2.30061 2.90343 3.06408 3.44183 3.65890 3.93553 3.99566 4.08304 4.22359 4.24300 4.27058 4.42174 4.59489 4.62129 4.69080 4.89179 4.97769 4.99821 5.01269 5.03994 5.15439 5.28047 5.30438 5.40900 5.48299 5.54973 5.91782 6.06256 6.28343 6.31171 6.73881 7.14678 7.34348 8.83865 Molecular weight = 366.01amu Principal moments of inertia in cm(-1) A = 0.010463 B = 0.003452 C = 0.002911 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2675.580313 B = 8109.752415 C = 9617.201658 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.937 5.937 2 C 0.033 3.967 3 Si 0.914 3.086 4 H -0.278 1.278 5 H -0.285 1.285 6 H -0.255 1.255 7 C -0.528 4.528 8 H 0.052 0.948 9 C 0.164 3.836 10 N -0.517 5.517 11 C 0.121 3.879 12 C -0.138 4.138 13 C -0.151 4.151 14 C -0.089 4.089 15 C -0.227 4.227 16 Br 0.013 6.987 17 S 0.188 5.812 18 C 0.101 3.899 19 C -0.121 4.121 20 C -0.060 4.060 21 C -0.166 4.166 22 C 0.076 3.924 23 N -0.524 5.524 24 C 0.089 3.911 25 H 0.264 0.736 26 H 0.023 0.977 27 H 0.019 0.981 28 H 0.054 0.946 29 H 0.100 0.900 30 H 0.132 0.868 31 H 0.156 0.844 32 H 0.035 0.965 33 H 0.103 0.897 34 H 0.161 0.839 35 H 0.172 0.828 36 H 0.178 0.822 37 H 0.126 0.874 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 17.345 -9.608 4.890 20.422 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.577 5.577 2 C -0.166 4.166 3 Si 0.740 3.260 4 H -0.203 1.203 5 H -0.211 1.211 6 H -0.179 1.179 7 C -0.567 4.567 8 H 0.070 0.930 9 C 0.037 3.963 10 N -0.239 5.239 11 C -0.009 4.009 12 C -0.257 4.257 13 C -0.182 4.182 14 C -0.123 4.123 15 C -0.423 4.423 16 Br 0.096 6.904 17 S 0.451 5.549 18 C -0.026 4.026 19 C -0.124 4.124 20 C -0.086 4.086 21 C -0.186 4.186 22 C -0.081 4.081 23 N -0.234 5.234 24 C -0.067 4.067 25 H 0.073 0.927 26 H 0.041 0.959 27 H 0.037 0.963 28 H 0.072 0.928 29 H 0.118 0.882 30 H 0.150 0.850 31 H 0.173 0.827 32 H 0.054 0.946 33 H 0.122 0.878 34 H 0.179 0.821 35 H 0.189 0.811 36 H 0.195 0.805 37 H 0.143 0.857 Dipole moment (debyes) X Y Z Total from point charges 18.823 -9.834 4.437 21.695 hybrid contribution -2.384 1.802 0.708 3.072 sum 16.438 -8.032 5.146 19.005 Atomic orbital electron populations 1.70013 1.07671 1.27633 1.52390 1.25463 0.94975 1.01667 0.94487 0.86204 0.79887 0.81206 0.78686 1.20335 1.21078 1.17907 1.21697 0.91861 0.93165 1.49942 0.92952 1.19975 0.92271 0.87842 0.96257 1.62491 1.58068 1.02675 1.00713 1.20545 0.96639 0.97319 0.86379 1.24679 0.98789 1.01878 1.00342 1.20222 1.02389 1.00498 0.95073 1.20261 0.92337 1.00016 0.99668 1.26147 1.01689 1.10976 1.03529 1.96640 1.46500 1.98331 1.48891 1.83842 1.17600 1.39678 1.13772 1.20901 0.97315 0.97774 0.86654 1.20773 0.96864 0.97081 0.97671 1.21800 0.92538 0.99619 0.94685 1.22482 1.02427 0.96461 0.97198 1.23295 0.90406 0.95281 0.99132 1.67645 1.11666 1.31203 1.12859 1.22621 0.99500 0.92621 0.91940 0.92726 0.95881 0.96304 0.92807 0.88203 0.85032 0.82655 0.94628 0.87837 0.82123 0.81064 0.80505 0.85685 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.94 -55.72 13.96 21.45 0.30 -55.42 16 2 C 0.03 1.84 5.47 84.66 0.46 2.30 16 3 Si 0.91 44.20 27.39 68.60 1.88 46.08 16 4 H -0.28 -13.61 7.11 99.48 0.71 -12.90 16 5 H -0.28 -13.62 7.11 99.48 0.71 -12.91 16 6 H -0.26 -11.84 6.67 99.48 0.66 -11.18 16 7 C -0.53 -27.13 7.82 25.60 0.20 -26.93 16 8 H 0.05 2.93 6.19 -2.91 -0.02 2.91 16 9 C 0.16 7.28 3.69 85.56 0.32 7.60 16 10 N -0.52 -18.53 4.65 -909.95 -4.23 -22.76 16 11 C 0.12 3.95 5.30 85.56 0.45 4.41 16 12 C -0.14 -4.33 5.52 24.58 0.14 -4.19 16 13 C -0.15 -4.99 9.03 21.22 0.19 -4.80 16 14 C -0.09 -2.53 10.11 21.24 0.21 -2.31 16 15 C -0.23 -6.00 6.97 66.74 0.47 -5.53 16 16 Br 0.01 0.28 34.07 -20.37 -0.69 -0.41 16 17 S 0.19 4.86 23.33 -56.49 -1.32 3.54 16 18 C 0.10 3.33 4.96 85.56 0.42 3.75 16 19 C -0.12 -3.95 4.90 -19.77 -0.10 -4.05 16 20 C -0.06 -1.49 9.86 22.47 0.22 -1.27 16 21 C -0.17 -3.63 10.11 22.36 0.23 -3.40 16 22 C 0.08 2.04 11.18 84.69 0.95 2.99 16 23 N -0.52 -19.17 10.36 -195.84 -2.03 -21.20 16 24 C 0.09 3.47 9.09 84.67 0.77 4.24 16 25 H 0.26 14.99 8.31 -92.71 -0.77 14.22 16 26 H 0.02 1.08 6.08 -2.39 -0.01 1.06 16 27 H 0.02 0.89 5.09 -2.39 -0.01 0.88 16 28 H 0.05 2.10 6.08 -2.39 -0.01 2.08 16 29 H 0.10 2.63 7.80 -2.39 -0.02 2.61 16 30 H 0.13 4.91 8.06 -2.91 -0.02 4.89 16 31 H 0.16 3.87 8.06 -2.91 -0.02 3.85 16 32 H 0.04 1.39 6.61 -2.39 -0.02 1.37 16 33 H 0.10 2.62 7.81 -2.39 -0.02 2.60 16 34 H 0.16 2.95 8.06 -2.91 -0.02 2.92 16 35 H 0.17 2.24 8.06 -2.91 -0.02 2.22 16 36 H 0.18 3.47 8.06 -2.91 -0.02 3.45 16 37 H 0.13 5.70 7.91 -2.91 -0.02 5.68 16 Total: -1.00 -63.51 340.80 -0.10 -63.62 By element: Atomic # 1 Polarization: 12.69 SS G_CDS: 1.05 Total: 13.75 kcal Atomic # 6 Polarization: -32.13 SS G_CDS: 4.93 Total: -27.20 kcal Atomic # 7 Polarization: -93.42 SS G_CDS: -5.96 Total: -99.38 kcal Atomic # 14 Polarization: 44.20 SS G_CDS: 1.88 Total: 46.08 kcal Atomic # 16 Polarization: 4.86 SS G_CDS: -1.32 Total: 3.54 kcal Atomic # 35 Polarization: 0.28 SS G_CDS: -0.69 Total: -0.41 kcal Total: -63.51 -0.10 -63.62 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000043677532.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 127.408 kcal (2) G-P(sol) polarization free energy of solvation -63.511 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 63.896 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.104 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.615 kcal (6) G-S(sol) free energy of system = (1) + (5) 63.793 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 3.47 seconds