Wall clock time and date at job start Tue Mar 31 2020 05:30:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 O 1.45199 * 109.47164 * 2 1 4 4 C 1.34235 * 116.99805 * 180.02562 * 3 2 1 5 5 O 1.20829 * 119.99808 * 359.97438 * 4 3 2 6 6 C 1.50705 * 119.99802 * 179.97438 * 4 3 2 7 7 C 1.53001 * 109.47126 * 84.99904 * 6 4 3 8 8 C 1.53000 * 109.47015 * 304.99774 * 7 6 4 9 9 C 1.52997 * 109.47162 * 180.02562 * 8 7 6 10 10 C 1.50704 * 109.47352 * 179.97438 * 9 8 7 11 11 H 1.08004 * 119.99965 * 359.97438 * 10 9 8 12 12 C 1.37877 * 120.00204 * 179.97438 * 10 9 8 13 13 N 1.31513 * 119.99913 * 180.02562 * 12 10 9 14 14 Si 1.86800 * 119.99830 * 359.97438 * 12 10 9 15 15 H 1.48503 * 109.46724 * 90.00182 * 14 12 10 16 16 H 1.48503 * 109.47122 * 210.00016 * 14 12 10 17 17 H 1.48498 * 109.47269 * 330.00215 * 14 12 10 18 18 O 1.42902 * 109.47146 * 324.99563 * 6 4 3 19 19 C 1.35898 * 116.99694 * 300.00436 * 18 6 4 20 20 C 1.38735 * 120.05254 * 179.97438 * 19 18 6 21 21 C 1.38144 * 119.94607 * 179.97438 * 20 19 18 22 22 C 1.38266 * 120.05233 * 0.02562 * 21 20 19 23 23 C 1.38269 * 120.11595 * 359.95530 * 22 21 20 24 24 C 1.38142 * 120.04935 * 0.04230 * 23 22 21 25 25 C 1.50696 * 109.46688 * 204.99676 * 6 4 3 26 26 O 1.20826 * 120.00417 * 334.99637 * 25 6 4 27 27 O 1.34238 * 119.99832 * 155.00151 * 25 6 4 28 28 C 1.45198 * 116.99910 * 179.97438 * 27 25 6 29 29 C 1.52997 * 109.46945 * 179.97438 * 28 27 25 30 30 H 1.09006 * 109.47110 * 300.00885 * 1 2 3 31 31 H 1.09006 * 109.46764 * 59.99790 * 1 2 3 32 32 H 1.08997 * 109.47599 * 180.02562 * 1 2 3 33 33 H 1.08998 * 109.47586 * 239.99533 * 2 1 3 34 34 H 1.09007 * 109.47079 * 119.99497 * 2 1 3 35 35 H 1.08997 * 109.47303 * 64.99626 * 7 6 4 36 36 H 1.09000 * 109.46946 * 185.00080 * 7 6 4 37 37 H 1.09007 * 109.47372 * 300.00340 * 8 7 6 38 38 H 1.08996 * 109.47214 * 59.99873 * 8 7 6 39 39 H 1.08997 * 109.46960 * 299.99733 * 9 8 7 40 40 H 1.09000 * 109.47142 * 60.00096 * 9 8 7 41 41 H 0.97003 * 120.00063 * 180.02562 * 13 12 10 42 42 H 1.08002 * 120.02704 * 359.70561 * 20 19 18 43 43 H 1.08001 * 119.97447 * 179.97438 * 21 20 19 44 44 H 1.08000 * 119.94089 * 179.97438 * 22 21 20 45 45 H 1.07992 * 119.97577 * 180.02562 * 23 22 21 46 46 H 1.08005 * 120.02748 * 179.97438 * 24 23 22 47 47 H 1.08997 * 109.47010 * 299.99949 * 28 27 25 48 48 H 1.08996 * 109.47437 * 59.99681 * 28 27 25 49 49 H 1.09008 * 109.47100 * 60.00426 * 29 28 27 50 50 H 1.08995 * 109.47171 * 179.97438 * 29 28 27 51 51 H 1.08997 * 109.47443 * 299.99951 * 29 28 27 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0140 1.3689 0.0000 4 6 3.3448 1.5448 -0.0005 5 8 4.0807 0.5865 -0.0005 6 6 3.9208 2.9374 -0.0012 7 6 4.0001 3.4571 1.4357 8 6 2.6184 3.3688 2.0869 9 6 2.6975 3.8891 3.5235 10 6 1.3364 3.8027 4.1648 11 1 0.4987 3.4157 3.6036 12 6 1.1607 4.2176 5.4678 13 7 -0.0270 4.1417 6.0276 14 14 2.6098 4.8862 6.4386 15 1 2.6997 6.3558 6.2447 16 1 2.4193 4.5880 7.8809 17 1 3.8623 4.2465 5.9621 18 8 3.0828 3.7991 -0.7740 19 6 2.9056 3.4766 -2.0822 20 6 2.1040 4.2693 -2.8908 21 6 1.9258 3.9397 -4.2204 22 6 2.5451 2.8205 -4.7453 23 6 3.3447 2.0290 -3.9417 24 6 3.5261 2.3544 -2.6115 25 6 5.3025 2.9091 -0.6020 26 8 5.9522 1.8907 -0.5754 27 8 5.8115 4.0154 -1.1668 28 6 7.1482 3.9152 -1.7251 29 6 7.5547 5.2647 -2.3203 30 1 -0.3634 0.5140 0.8899 31 1 -0.3633 0.5139 -0.8900 32 1 -0.3634 -1.0276 0.0005 33 1 1.8934 -0.5139 -0.8899 34 1 1.8933 -0.5138 0.8901 35 1 4.7081 2.8524 2.0023 36 1 4.3327 4.4951 1.4287 37 1 1.9102 3.9735 1.5203 38 1 2.2857 2.3309 2.0938 39 1 3.4056 3.2847 4.0903 40 1 3.0300 4.9271 3.5162 41 1 -0.1507 4.4339 6.9442 42 1 1.6163 5.1410 -2.4800 43 1 1.3016 4.5563 -4.8502 44 1 2.4042 2.5642 -5.7850 45 1 3.8277 1.1556 -4.3542 46 1 4.1505 1.7357 -1.9839 47 1 7.8504 3.6380 -0.9389 48 1 7.1595 3.1555 -2.5066 49 1 7.5433 6.0247 -1.5389 50 1 8.5582 5.1897 -2.7389 51 1 6.8524 5.5414 -3.1066 RHF calculation, no. of doubly occupied orbitals= 69 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000044125552.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:30:33 Heat of formation + Delta-G solvation = -176.570758 kcal Electronic energy + Delta-G solvation = -35426.682300 eV Core-core repulsion = 30871.485232 eV Total energy + Delta-G solvation = -4555.197068 eV No. of doubly occupied orbitals = 69 Molecular weight (most abundant/longest-lived isotopes) = 364.181 amu Computer time = 1.19 seconds Orbital eigenvalues (eV) -42.16642 -40.13179 -39.67131 -37.82883 -37.15777 -36.34306 -35.02982 -32.73276 -31.96436 -31.64668 -31.23304 -30.52603 -29.52541 -26.77347 -24.63122 -23.57746 -23.18252 -22.68613 -22.25722 -22.09236 -20.50332 -20.06902 -19.34842 -17.60538 -17.47224 -17.21374 -17.11361 -16.62270 -16.56469 -16.15705 -15.93097 -15.09763 -14.65743 -14.55046 -14.31212 -14.21731 -14.14010 -13.92977 -13.55196 -13.44200 -13.33965 -13.07461 -12.90573 -12.75007 -12.61430 -12.23608 -12.11230 -12.06389 -11.99115 -11.84089 -11.80041 -11.68853 -11.54654 -11.21218 -11.08288 -10.90447 -10.77020 -10.74442 -10.49098 -10.22184 -9.94902 -9.76425 -9.62062 -9.20447 -9.18732 -8.52590 -8.43869 -6.02896 -4.00766 1.11143 1.23329 1.63541 1.79879 1.98185 2.80436 2.87656 3.31564 3.39149 3.42294 3.60645 4.06074 4.32305 4.46222 4.48224 4.64337 4.66307 4.67933 4.71198 4.91824 4.96183 4.99710 5.00309 5.15988 5.18379 5.27717 5.30577 5.34014 5.37958 5.47701 5.51498 5.52699 5.64868 5.70093 5.80546 5.83819 5.90276 6.04050 6.07262 6.10710 6.19884 6.32686 6.36458 6.40898 6.51339 6.53302 6.84264 7.01880 7.27660 7.39086 7.42284 7.59880 7.78810 8.55310 9.02580 9.59407 11.10496 Molecular weight = 364.18amu Principal moments of inertia in cm(-1) A = 0.009084 B = 0.003606 C = 0.003082 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3081.755946 B = 7763.581136 C = 9081.906058 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C 0.062 3.938 3 O -0.329 6.329 4 C 0.457 3.543 5 O -0.468 6.468 6 C 0.147 3.853 7 C -0.113 4.113 8 C -0.101 4.101 9 C -0.013 4.013 10 C -0.517 4.517 11 H 0.074 0.926 12 C 0.067 3.933 13 N -0.903 5.903 14 Si 0.877 3.123 15 H -0.276 1.276 16 H -0.288 1.288 17 H -0.266 1.266 18 O -0.261 6.261 19 C 0.132 3.868 20 C -0.137 4.137 21 C -0.079 4.079 22 C -0.157 4.157 23 C -0.074 4.074 24 C -0.228 4.228 25 C 0.449 3.551 26 O -0.462 6.462 27 O -0.338 6.338 28 C 0.060 3.940 29 C -0.151 4.151 30 H 0.076 0.924 31 H 0.066 0.934 32 H 0.079 0.921 33 H 0.067 0.933 34 H 0.075 0.925 35 H 0.094 0.906 36 H 0.102 0.898 37 H 0.074 0.926 38 H 0.060 0.940 39 H 0.015 0.985 40 H 0.015 0.985 41 H 0.263 0.737 42 H 0.138 0.862 43 H 0.132 0.868 44 H 0.124 0.876 45 H 0.123 0.877 46 H 0.125 0.875 47 H 0.073 0.927 48 H 0.070 0.930 49 H 0.070 0.930 50 H 0.080 0.920 51 H 0.068 0.932 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.934 -1.846 -22.827 24.583 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C -0.011 4.011 3 O -0.245 6.245 4 C 0.297 3.703 5 O -0.354 6.354 6 C 0.105 3.895 7 C -0.150 4.150 8 C -0.139 4.139 9 C -0.050 4.050 10 C -0.555 4.555 11 H 0.092 0.908 12 C -0.134 4.134 13 N -0.542 5.542 14 Si 0.705 3.295 15 H -0.202 1.202 16 H -0.214 1.214 17 H -0.190 1.190 18 O -0.174 6.174 19 C 0.087 3.913 20 C -0.156 4.156 21 C -0.097 4.097 22 C -0.175 4.175 23 C -0.092 4.092 24 C -0.247 4.247 25 C 0.289 3.711 26 O -0.346 6.346 27 O -0.255 6.255 28 C -0.014 4.014 29 C -0.208 4.208 30 H 0.095 0.905 31 H 0.085 0.915 32 H 0.098 0.902 33 H 0.085 0.915 34 H 0.093 0.907 35 H 0.113 0.887 36 H 0.121 0.879 37 H 0.093 0.907 38 H 0.078 0.922 39 H 0.034 0.966 40 H 0.034 0.966 41 H 0.072 0.928 42 H 0.156 0.844 43 H 0.150 0.850 44 H 0.142 0.858 45 H 0.141 0.859 46 H 0.143 0.857 47 H 0.092 0.908 48 H 0.089 0.911 49 H 0.089 0.911 50 H 0.099 0.901 51 H 0.087 0.913 Dipole moment (debyes) X Y Z Total from point charges 9.187 -2.284 -22.559 24.465 hybrid contribution 1.042 -0.152 0.643 1.234 sum 10.229 -2.436 -21.915 24.308 Atomic orbital electron populations 1.21809 0.92013 1.02920 1.04230 1.23139 0.95935 0.79558 1.02517 1.86619 1.22150 1.32780 1.82918 1.22947 0.82407 0.91006 0.73960 1.90802 1.60113 1.41197 1.43310 1.21625 0.84136 0.87003 0.96720 1.22085 1.03615 1.03625 0.85715 1.21575 0.91865 1.02188 0.98225 1.19579 0.98280 0.95810 0.91364 1.21087 0.94167 1.42468 0.97799 0.90831 1.25013 0.95519 0.95298 0.97596 1.69911 1.22059 1.48223 1.14024 0.86816 0.83768 0.79712 0.79234 1.20209 1.21413 1.19037 1.86385 1.63619 1.48617 1.18748 1.19076 0.95272 0.93837 0.83077 1.20466 1.00732 1.01214 0.93142 1.21001 0.98068 0.96498 0.94089 1.21065 0.99905 0.96478 1.00079 1.20864 0.96971 0.98815 0.92526 1.21586 1.05610 0.99256 0.98248 1.23282 0.89030 0.82315 0.76483 1.90817 1.59796 1.31755 1.52280 1.86561 1.33750 1.37353 1.67806 1.23137 0.80210 0.99817 0.98198 1.21800 1.01741 0.95486 1.01804 0.90470 0.91541 0.90216 0.91475 0.90710 0.88750 0.87930 0.90693 0.92166 0.96638 0.96645 0.92767 0.84405 0.85035 0.85794 0.85913 0.85723 0.90845 0.91140 0.91136 0.90097 0.91316 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.73 10.29 37.16 0.38 -1.35 16 2 C 0.06 0.84 6.19 37.16 0.23 1.07 16 3 O -0.33 -5.46 8.45 -44.44 -0.38 -5.83 16 4 C 0.46 8.01 3.29 36.01 0.12 8.13 16 5 O -0.47 -8.94 13.91 -26.58 -0.37 -9.31 16 6 C 0.15 2.44 0.73 -92.92 -0.07 2.38 16 7 C -0.11 -1.92 4.48 -26.73 -0.12 -2.04 16 8 C -0.10 -2.02 4.49 -26.73 -0.12 -2.14 16 9 C -0.01 -0.31 4.04 -27.88 -0.11 -0.42 16 10 C -0.52 -14.66 9.66 -34.44 -0.33 -14.99 16 11 H 0.07 2.24 7.99 -52.48 -0.42 1.82 16 12 C 0.07 1.94 5.47 -17.82 -0.10 1.84 16 13 N -0.90 -27.76 13.96 55.43 0.77 -26.99 16 14 Si 0.88 21.64 27.47 -169.99 -4.67 16.97 16 15 H -0.28 -6.66 7.11 56.52 0.40 -6.26 16 16 H -0.29 -7.06 7.11 56.52 0.40 -6.66 16 17 H -0.27 -6.29 6.54 56.52 0.37 -5.92 16 18 O -0.26 -4.17 8.95 -44.06 -0.39 -4.56 16 19 C 0.13 1.91 5.84 -39.22 -0.23 1.68 16 20 C -0.14 -1.65 9.99 -39.43 -0.39 -2.04 16 21 C -0.08 -0.77 10.04 -39.61 -0.40 -1.16 16 22 C -0.16 -1.52 10.04 -39.56 -0.40 -1.92 16 23 C -0.07 -0.85 10.04 -39.61 -0.40 -1.25 16 24 C -0.23 -3.25 7.54 -39.44 -0.30 -3.54 16 25 C 0.45 7.22 4.21 36.00 0.15 7.37 16 26 O -0.46 -8.25 13.91 -26.58 -0.37 -8.62 16 27 O -0.34 -4.70 9.79 -44.45 -0.44 -5.14 16 28 C 0.06 0.63 6.19 37.16 0.23 0.86 16 29 C -0.15 -1.15 10.29 37.16 0.38 -0.77 16 30 H 0.08 0.99 8.14 -51.93 -0.42 0.56 16 31 H 0.07 0.72 8.14 -51.93 -0.42 0.30 16 32 H 0.08 0.71 8.14 -51.93 -0.42 0.28 16 33 H 0.07 0.84 8.13 -51.93 -0.42 0.41 16 34 H 0.07 1.03 8.13 -51.93 -0.42 0.60 16 35 H 0.09 1.55 8.14 -51.93 -0.42 1.13 16 36 H 0.10 1.56 8.14 -51.93 -0.42 1.14 16 37 H 0.07 1.52 7.82 -51.92 -0.41 1.11 16 38 H 0.06 1.24 6.34 -51.93 -0.33 0.91 16 39 H 0.02 0.36 7.20 -51.93 -0.37 -0.01 16 40 H 0.02 0.35 7.57 -51.93 -0.39 -0.04 16 41 H 0.26 7.56 8.31 -40.82 -0.34 7.22 16 42 H 0.14 1.49 8.06 -52.49 -0.42 1.06 16 43 H 0.13 0.90 8.06 -52.49 -0.42 0.47 16 44 H 0.12 0.87 8.06 -52.49 -0.42 0.44 16 45 H 0.12 1.19 8.06 -52.49 -0.42 0.76 16 46 H 0.13 2.02 3.42 -52.48 -0.18 1.84 16 47 H 0.07 0.74 8.13 -51.93 -0.42 0.32 16 48 H 0.07 0.72 8.13 -51.93 -0.42 0.30 16 49 H 0.07 0.53 8.14 -51.92 -0.42 0.11 16 50 H 0.08 0.44 8.14 -51.93 -0.42 0.01 16 51 H 0.07 0.53 8.14 -51.93 -0.42 0.10 16 LS Contribution 418.55 15.07 6.31 6.31 Total: -1.00 -34.42 418.55 -9.03 -43.45 By element: Atomic # 1 Polarization: 10.06 SS G_CDS: -8.03 Total: 2.03 kcal Atomic # 6 Polarization: -6.83 SS G_CDS: -1.47 Total: -8.30 kcal Atomic # 7 Polarization: -27.76 SS G_CDS: 0.77 Total: -26.99 kcal Atomic # 8 Polarization: -31.52 SS G_CDS: -1.94 Total: -33.47 kcal Atomic # 14 Polarization: 21.64 SS G_CDS: -4.67 Total: 16.97 kcal Total LS contribution 6.31 Total: 6.31 kcal Total: -34.42 -9.03 -43.45 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000044125552.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -133.123 kcal (2) G-P(sol) polarization free energy of solvation -34.416 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -167.539 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.032 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.448 kcal (6) G-S(sol) free energy of system = (1) + (5) -176.571 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.19 seconds