Wall clock time and date at job start Tue Mar 31 2020 05:30:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 O 1.45199 * 109.47164 * 2 1 4 4 C 1.34235 * 116.99805 * 180.02562 * 3 2 1 5 5 O 1.20829 * 119.99808 * 359.97438 * 4 3 2 6 6 C 1.50705 * 119.99802 * 179.97438 * 4 3 2 7 7 C 1.53001 * 109.47126 * 84.99904 * 6 4 3 8 8 C 1.53000 * 109.47015 * 304.99774 * 7 6 4 9 9 C 1.52997 * 109.47162 * 180.02562 * 8 7 6 10 10 C 1.50704 * 109.47352 * 179.97438 * 9 8 7 11 11 H 1.08004 * 119.99965 * 359.97438 * 10 9 8 12 12 C 1.37877 * 120.00204 * 179.97438 * 10 9 8 13 13 N 1.31513 * 119.99913 * 180.02562 * 12 10 9 14 14 Si 1.86800 * 119.99830 * 359.97438 * 12 10 9 15 15 H 1.48503 * 109.46724 * 90.00182 * 14 12 10 16 16 H 1.48503 * 109.47122 * 210.00016 * 14 12 10 17 17 H 1.48498 * 109.47269 * 330.00215 * 14 12 10 18 18 O 1.42902 * 109.47146 * 324.99563 * 6 4 3 19 19 C 1.35898 * 116.99694 * 300.00436 * 18 6 4 20 20 C 1.38735 * 120.05254 * 179.97438 * 19 18 6 21 21 C 1.38144 * 119.94607 * 179.97438 * 20 19 18 22 22 C 1.38266 * 120.05233 * 0.02562 * 21 20 19 23 23 C 1.38269 * 120.11595 * 359.95530 * 22 21 20 24 24 C 1.38142 * 120.04935 * 0.04230 * 23 22 21 25 25 C 1.50696 * 109.46688 * 204.99676 * 6 4 3 26 26 O 1.20826 * 120.00417 * 334.99637 * 25 6 4 27 27 O 1.34238 * 119.99832 * 155.00151 * 25 6 4 28 28 C 1.45198 * 116.99910 * 179.97438 * 27 25 6 29 29 C 1.52997 * 109.46945 * 179.97438 * 28 27 25 30 30 H 1.09006 * 109.47110 * 300.00885 * 1 2 3 31 31 H 1.09006 * 109.46764 * 59.99790 * 1 2 3 32 32 H 1.08997 * 109.47599 * 180.02562 * 1 2 3 33 33 H 1.08998 * 109.47586 * 239.99533 * 2 1 3 34 34 H 1.09007 * 109.47079 * 119.99497 * 2 1 3 35 35 H 1.08997 * 109.47303 * 64.99626 * 7 6 4 36 36 H 1.09000 * 109.46946 * 185.00080 * 7 6 4 37 37 H 1.09007 * 109.47372 * 300.00340 * 8 7 6 38 38 H 1.08996 * 109.47214 * 59.99873 * 8 7 6 39 39 H 1.08997 * 109.46960 * 299.99733 * 9 8 7 40 40 H 1.09000 * 109.47142 * 60.00096 * 9 8 7 41 41 H 0.97003 * 120.00063 * 180.02562 * 13 12 10 42 42 H 1.08002 * 120.02704 * 359.70561 * 20 19 18 43 43 H 1.08001 * 119.97447 * 179.97438 * 21 20 19 44 44 H 1.08000 * 119.94089 * 179.97438 * 22 21 20 45 45 H 1.07992 * 119.97577 * 180.02562 * 23 22 21 46 46 H 1.08005 * 120.02748 * 179.97438 * 24 23 22 47 47 H 1.08997 * 109.47010 * 299.99949 * 28 27 25 48 48 H 1.08996 * 109.47437 * 59.99681 * 28 27 25 49 49 H 1.09008 * 109.47100 * 60.00426 * 29 28 27 50 50 H 1.08995 * 109.47171 * 179.97438 * 29 28 27 51 51 H 1.08997 * 109.47443 * 299.99951 * 29 28 27 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0140 1.3689 0.0000 4 6 3.3448 1.5448 -0.0005 5 8 4.0807 0.5865 -0.0005 6 6 3.9208 2.9374 -0.0012 7 6 4.0001 3.4571 1.4357 8 6 2.6184 3.3688 2.0869 9 6 2.6975 3.8891 3.5235 10 6 1.3364 3.8027 4.1648 11 1 0.4987 3.4157 3.6036 12 6 1.1607 4.2176 5.4678 13 7 -0.0270 4.1417 6.0276 14 14 2.6098 4.8862 6.4386 15 1 2.6997 6.3558 6.2447 16 1 2.4193 4.5880 7.8809 17 1 3.8623 4.2465 5.9621 18 8 3.0828 3.7991 -0.7740 19 6 2.9056 3.4766 -2.0822 20 6 2.1040 4.2693 -2.8908 21 6 1.9258 3.9397 -4.2204 22 6 2.5451 2.8205 -4.7453 23 6 3.3447 2.0290 -3.9417 24 6 3.5261 2.3544 -2.6115 25 6 5.3025 2.9091 -0.6020 26 8 5.9522 1.8907 -0.5754 27 8 5.8115 4.0154 -1.1668 28 6 7.1482 3.9152 -1.7251 29 6 7.5547 5.2647 -2.3203 30 1 -0.3634 0.5140 0.8899 31 1 -0.3633 0.5139 -0.8900 32 1 -0.3634 -1.0276 0.0005 33 1 1.8934 -0.5139 -0.8899 34 1 1.8933 -0.5138 0.8901 35 1 4.7081 2.8524 2.0023 36 1 4.3327 4.4951 1.4287 37 1 1.9102 3.9735 1.5203 38 1 2.2857 2.3309 2.0938 39 1 3.4056 3.2847 4.0903 40 1 3.0300 4.9271 3.5162 41 1 -0.1507 4.4339 6.9442 42 1 1.6163 5.1410 -2.4800 43 1 1.3016 4.5563 -4.8502 44 1 2.4042 2.5642 -5.7850 45 1 3.8277 1.1556 -4.3542 46 1 4.1505 1.7357 -1.9839 47 1 7.8504 3.6380 -0.9389 48 1 7.1595 3.1555 -2.5066 49 1 7.5433 6.0247 -1.5389 50 1 8.5582 5.1897 -2.7389 51 1 6.8524 5.5414 -3.1066 RHF calculation, no. of doubly occupied orbitals= 69 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000044125552.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:30:32 Heat of formation + Delta-G solvation = -193.979255 kcal Electronic energy + Delta-G solvation = -35427.437189 eV Core-core repulsion = 30871.485232 eV Total energy + Delta-G solvation = -4555.951957 eV No. of doubly occupied orbitals = 69 Molecular weight (most abundant/longest-lived isotopes) = 364.181 amu Computer time = 1.38 seconds Orbital eigenvalues (eV) -43.37428 -41.34720 -40.73303 -38.86169 -38.34322 -37.60014 -36.63604 -34.64334 -32.94847 -32.75113 -32.20313 -31.84780 -30.59942 -28.44288 -25.75571 -25.01222 -24.18682 -23.63923 -23.40263 -23.18802 -22.04403 -21.49113 -20.46362 -18.99668 -18.73830 -18.57355 -18.42178 -18.22521 -17.68778 -17.11852 -16.95895 -16.38417 -16.02225 -15.94822 -15.73141 -15.36837 -15.15671 -15.10446 -14.82721 -14.59361 -14.49041 -14.29842 -14.10180 -13.89152 -13.71651 -13.65383 -13.53473 -13.12170 -13.06245 -13.01881 -12.84834 -12.67129 -12.60653 -12.59426 -12.53860 -12.34680 -11.98210 -11.82911 -11.69639 -11.67316 -11.59511 -11.48860 -11.41494 -11.26545 -10.73624 -10.08755 -9.38801 -8.26426 -6.30389 0.20863 0.32754 0.41165 0.64320 0.71499 1.37991 1.39982 1.51400 1.65363 1.71911 2.38477 2.71692 2.91533 3.08866 3.11516 3.28891 3.68778 3.72161 3.89011 3.91137 3.94531 3.96160 3.96988 4.02770 4.17574 4.20751 4.23348 4.33339 4.40432 4.46624 4.57307 4.64450 4.67341 4.77800 4.80459 4.83795 4.86615 4.94628 4.96777 4.97440 5.01013 5.16444 5.24795 5.25616 5.36401 5.45072 5.48916 5.53643 5.62228 5.66572 6.03879 6.28045 6.31163 6.31745 6.76662 7.33530 8.90318 Molecular weight = 364.18amu Principal moments of inertia in cm(-1) A = 0.009084 B = 0.003606 C = 0.003082 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3081.755946 B = 7763.581136 C = 9081.906058 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C 0.052 3.948 3 O -0.339 6.339 4 C 0.458 3.542 5 O -0.492 6.492 6 C 0.146 3.854 7 C -0.109 4.109 8 C -0.088 4.088 9 C -0.011 4.011 10 C -0.529 4.529 11 H 0.032 0.968 12 C 0.005 3.995 13 N -0.951 5.951 14 Si 0.947 3.053 15 H -0.262 1.262 16 H -0.286 1.286 17 H -0.246 1.246 18 O -0.271 6.271 19 C 0.103 3.897 20 C -0.147 4.147 21 C -0.069 4.069 22 C -0.146 4.146 23 C -0.082 4.082 24 C -0.247 4.247 25 C 0.459 3.541 26 O -0.487 6.487 27 O -0.339 6.339 28 C 0.049 3.951 29 C -0.144 4.144 30 H 0.056 0.944 31 H 0.072 0.928 32 H 0.109 0.891 33 H 0.079 0.921 34 H 0.068 0.932 35 H 0.099 0.901 36 H 0.123 0.877 37 H 0.067 0.933 38 H 0.045 0.955 39 H 0.020 0.980 40 H 0.030 0.970 41 H 0.266 0.734 42 H 0.145 0.855 43 H 0.168 0.832 44 H 0.159 0.841 45 H 0.137 0.863 46 H 0.101 0.899 47 H 0.077 0.923 48 H 0.070 0.930 49 H 0.071 0.929 50 H 0.107 0.893 51 H 0.067 0.933 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.390 -0.642 -24.992 27.073 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.020 4.020 3 O -0.255 6.255 4 C 0.299 3.701 5 O -0.380 6.380 6 C 0.104 3.896 7 C -0.146 4.146 8 C -0.126 4.126 9 C -0.048 4.048 10 C -0.567 4.567 11 H 0.051 0.949 12 C -0.191 4.191 13 N -0.592 5.592 14 Si 0.770 3.230 15 H -0.187 1.187 16 H -0.212 1.212 17 H -0.170 1.170 18 O -0.185 6.185 19 C 0.059 3.941 20 C -0.166 4.166 21 C -0.087 4.087 22 C -0.163 4.163 23 C -0.100 4.100 24 C -0.265 4.265 25 C 0.299 3.701 26 O -0.374 6.374 27 O -0.255 6.255 28 C -0.023 4.023 29 C -0.201 4.201 30 H 0.075 0.925 31 H 0.091 0.909 32 H 0.128 0.872 33 H 0.097 0.903 34 H 0.086 0.914 35 H 0.117 0.883 36 H 0.141 0.859 37 H 0.086 0.914 38 H 0.064 0.936 39 H 0.038 0.962 40 H 0.049 0.951 41 H 0.075 0.925 42 H 0.163 0.837 43 H 0.186 0.814 44 H 0.177 0.823 45 H 0.155 0.845 46 H 0.119 0.881 47 H 0.095 0.905 48 H 0.089 0.911 49 H 0.090 0.910 50 H 0.126 0.874 51 H 0.087 0.913 Dipole moment (debyes) X Y Z Total from point charges 10.641 -1.065 -24.756 26.967 hybrid contribution 0.470 -0.566 1.143 1.359 sum 11.111 -1.631 -23.613 26.148 Atomic orbital electron populations 1.21822 0.90239 1.04645 1.03482 1.23425 0.97324 0.78508 1.02778 1.86622 1.21913 1.34423 1.82591 1.23193 0.82438 0.91311 0.73145 1.90768 1.60577 1.42032 1.44624 1.21470 0.84924 0.86571 0.96606 1.21976 1.01428 1.05113 0.86061 1.21311 0.93842 1.00910 0.96493 1.19529 0.95445 0.96872 0.92954 1.21406 0.95341 1.41897 0.98049 0.94940 1.25988 0.98678 0.95654 0.98826 1.70067 1.24686 1.49744 1.14656 0.85704 0.80302 0.79652 0.77319 1.18714 1.21172 1.16959 1.86343 1.63784 1.48510 1.19831 1.19386 0.97005 0.95038 0.82626 1.20776 1.00431 1.01295 0.94075 1.21454 0.97423 0.96543 0.93285 1.21486 0.98021 0.95447 1.01388 1.21146 0.97431 0.99714 0.91712 1.21520 1.06330 0.99418 0.99279 1.23088 0.88504 0.82399 0.76112 1.90793 1.60355 1.32686 1.53551 1.86562 1.35378 1.36252 1.67328 1.23520 0.78658 1.01828 0.98340 1.21833 1.03064 0.93521 1.01640 0.92480 0.90887 0.87235 0.90317 0.91354 0.88295 0.85890 0.91438 0.93590 0.96152 0.95136 0.92541 0.83692 0.81436 0.82295 0.84508 0.88086 0.90510 0.91141 0.91012 0.87425 0.91346 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.33 10.29 71.98 0.74 -2.59 16 2 C 0.05 1.48 6.19 71.98 0.45 1.93 16 3 O -0.34 -11.79 8.45 -46.52 -0.39 -12.18 16 4 C 0.46 16.66 3.29 71.24 0.23 16.89 16 5 O -0.49 -19.58 13.91 29.44 0.41 -19.17 16 6 C 0.15 4.96 0.73 -12.29 -0.01 4.95 16 7 C -0.11 -3.68 4.48 30.59 0.14 -3.54 16 8 C -0.09 -3.60 4.49 30.59 0.14 -3.46 16 9 C -0.01 -0.50 4.04 29.85 0.12 -0.38 16 10 C -0.53 -30.82 9.66 25.60 0.25 -30.57 16 11 H 0.03 2.09 7.99 -2.91 -0.02 2.06 16 12 C 0.01 0.30 5.47 84.65 0.46 0.77 16 13 N -0.95 -59.99 13.96 21.45 0.30 -59.70 16 14 Si 0.95 44.20 27.47 68.60 1.88 46.08 16 15 H -0.26 -11.62 7.11 99.48 0.71 -10.91 16 16 H -0.29 -13.16 7.11 99.48 0.71 -12.45 16 17 H -0.25 -10.64 6.54 99.48 0.65 -9.98 16 18 O -0.27 -8.81 8.95 -68.84 -0.62 -9.43 16 19 C 0.10 2.98 5.84 22.51 0.13 3.12 16 20 C -0.15 -3.35 9.99 22.37 0.22 -3.13 16 21 C -0.07 -1.13 10.04 22.25 0.22 -0.91 16 22 C -0.15 -2.34 10.04 22.28 0.22 -2.12 16 23 C -0.08 -1.77 10.04 22.25 0.22 -1.55 16 24 C -0.25 -7.02 7.54 22.36 0.17 -6.85 16 25 C 0.46 14.90 4.21 71.23 0.30 15.20 16 26 O -0.49 -17.82 13.91 29.45 0.41 -17.41 16 27 O -0.34 -9.30 9.79 -46.55 -0.46 -9.76 16 28 C 0.05 1.00 6.19 71.98 0.45 1.44 16 29 C -0.14 -1.89 10.29 71.98 0.74 -1.15 16 30 H 0.06 1.53 8.14 -2.38 -0.02 1.51 16 31 H 0.07 1.57 8.14 -2.38 -0.02 1.55 16 32 H 0.11 1.83 8.14 -2.39 -0.02 1.81 16 33 H 0.08 2.01 8.13 -2.39 -0.02 1.99 16 34 H 0.07 1.98 8.13 -2.38 -0.02 1.96 16 35 H 0.10 3.23 8.14 -2.39 -0.02 3.21 16 36 H 0.12 3.61 8.14 -2.39 -0.02 3.59 16 37 H 0.07 2.82 7.82 -2.38 -0.02 2.80 16 38 H 0.05 1.98 6.34 -2.39 -0.02 1.96 16 39 H 0.02 0.94 7.20 -2.39 -0.02 0.92 16 40 H 0.03 1.35 7.57 -2.39 -0.02 1.33 16 41 H 0.27 15.62 8.31 -92.71 -0.77 14.85 16 42 H 0.15 2.97 8.06 -2.91 -0.02 2.95 16 43 H 0.17 1.51 8.06 -2.91 -0.02 1.49 16 44 H 0.16 1.46 8.06 -2.91 -0.02 1.43 16 45 H 0.14 2.44 8.06 -2.91 -0.02 2.42 16 46 H 0.10 3.38 3.42 -2.91 -0.01 3.37 16 47 H 0.08 1.49 8.13 -2.39 -0.02 1.47 16 48 H 0.07 1.41 8.13 -2.39 -0.02 1.39 16 49 H 0.07 0.94 8.14 -2.38 -0.02 0.92 16 50 H 0.11 0.86 8.14 -2.39 -0.02 0.84 16 51 H 0.07 0.91 8.14 -2.39 -0.02 0.90 16 Total: -1.00 -77.74 418.55 7.60 -70.14 By element: Atomic # 1 Polarization: 22.51 SS G_CDS: 0.86 Total: 23.38 kcal Atomic # 6 Polarization: -17.16 SS G_CDS: 5.20 Total: -11.96 kcal Atomic # 7 Polarization: -59.99 SS G_CDS: 0.30 Total: -59.70 kcal Atomic # 8 Polarization: -67.30 SS G_CDS: -0.65 Total: -67.95 kcal Atomic # 14 Polarization: 44.20 SS G_CDS: 1.88 Total: 46.08 kcal Total: -77.74 7.60 -70.14 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000044125552.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -123.835 kcal (2) G-P(sol) polarization free energy of solvation -77.744 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -201.579 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 7.600 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.144 kcal (6) G-S(sol) free energy of system = (1) + (5) -193.979 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.38 seconds