Wall clock time and date at job start Tue Mar 31 2020 05:07:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.09002 * 109.47070 * 2 1 4 4 C 1.50703 * 109.46966 * 119.99910 * 2 1 3 5 5 N 1.30317 * 126.35308 * 75.02552 * 4 2 1 6 6 N 1.28507 * 110.14092 * 179.97438 * 5 4 2 7 7 C 1.31296 * 109.91718 * 359.97438 * 6 5 4 8 8 S 1.76197 * 126.50203 * 180.02562 * 7 6 5 9 9 C 1.81009 * 99.99975 * 359.97438 * 8 7 6 10 10 C 1.52994 * 109.47264 * 180.02562 * 9 8 7 11 11 C 1.50699 * 109.47107 * 180.02562 * 10 9 8 12 12 H 1.07990 * 120.00264 * 0.02562 * 11 10 9 13 13 C 1.37879 * 119.99710 * 179.97438 * 11 10 9 14 14 N 1.31515 * 120.00118 * 0.02562 * 13 11 10 15 15 Si 1.86807 * 119.99905 * 179.97438 * 13 11 10 16 16 H 1.48499 * 109.46754 * 60.00359 * 15 13 11 17 17 H 1.48493 * 109.47254 * 180.02562 * 15 13 11 18 18 H 1.48500 * 109.47074 * 300.00512 * 15 13 11 19 19 N 1.36780 * 106.99995 * 359.76046 * 7 6 5 20 20 C 1.40322 * 127.17897 * 180.25594 * 19 7 6 21 21 C 1.38806 * 120.03668 * 114.86236 * 20 19 7 22 22 C 1.38114 * 119.95876 * 179.77490 * 21 20 19 23 23 C 1.38481 * 120.04150 * 0.48117 * 22 21 20 24 24 F 1.35098 * 119.96116 * 179.77083 * 23 22 21 25 25 C 1.38481 * 120.07321 * 359.79360 * 23 22 21 26 26 C 1.38109 * 120.04022 * 359.95504 * 25 23 22 27 27 N 1.46899 * 109.47394 * 239.99962 * 2 1 3 28 28 C 1.46904 * 111.00029 * 59.99847 * 27 2 1 29 29 C 1.46901 * 111.00056 * 183.95896 * 27 2 1 30 30 H 1.08996 * 109.47407 * 300.00400 * 1 2 3 31 31 H 1.09000 * 109.46986 * 60.00171 * 1 2 3 32 32 H 1.09002 * 109.47075 * 179.97438 * 1 2 3 33 33 H 1.09001 * 109.47057 * 300.00225 * 9 8 7 34 34 H 1.08996 * 109.46901 * 60.00090 * 9 8 7 35 35 H 1.09001 * 109.47105 * 299.99997 * 10 9 8 36 36 H 1.08998 * 109.47236 * 59.99568 * 10 9 8 37 37 H 0.97005 * 119.99489 * 179.97438 * 14 13 11 38 38 H 1.07994 * 120.02025 * 0.02718 * 21 20 19 39 39 H 1.08000 * 119.97821 * 180.23235 * 22 21 20 40 40 H 1.08000 * 119.97699 * 179.97438 * 25 23 22 41 41 H 1.08005 * 120.01903 * 180.02562 * 26 25 23 42 42 H 1.09003 * 109.46442 * 60.00214 * 28 27 2 43 43 H 1.09005 * 109.46832 * 179.97438 * 28 27 2 44 44 H 1.08995 * 109.47167 * 300.00240 * 28 27 2 45 45 H 1.08997 * 109.47290 * 59.99585 * 29 27 2 46 46 H 1.09001 * 109.47028 * 179.97438 * 29 27 2 47 47 H 1.09001 * 109.46536 * 299.99508 * 29 27 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0323 -0.7104 1.2305 5 7 2.0341 -1.9978 1.4326 6 7 2.5333 -2.2639 2.5864 7 6 2.8816 -1.1514 3.1905 8 16 3.6093 -1.0101 4.7889 9 6 3.6948 -2.7582 5.2509 10 6 4.3112 -2.8876 6.6452 11 6 4.3830 -4.3430 7.0296 12 1 4.0253 -5.0999 6.3475 13 6 4.9065 -4.7082 8.2517 14 7 5.3427 -3.7864 9.0822 15 14 4.9949 -6.5122 8.7285 16 1 5.8344 -7.2433 7.7457 17 1 5.5932 -6.6378 10.0817 18 1 3.6267 -7.0895 8.7372 19 7 2.5780 -0.1232 2.3410 20 6 2.7803 1.2476 2.5625 21 6 3.6770 1.9540 1.7728 22 6 3.8715 3.3042 1.9892 23 6 3.1799 3.9511 2.9997 24 9 3.3749 5.2708 3.2129 25 6 2.2892 3.2465 3.7921 26 6 2.0884 1.8974 3.5752 27 7 2.0198 -0.6925 -1.1994 28 6 1.5487 -0.0264 -2.4211 29 6 3.4852 -0.7946 -1.1869 30 1 -0.3634 0.5139 0.8899 31 1 -0.3633 0.5138 -0.8900 32 1 -0.3633 -1.0277 -0.0005 33 1 2.6906 -3.1819 5.2573 34 1 4.3111 -3.2948 4.5296 35 1 5.3155 -2.4638 6.6393 36 1 3.6947 -2.3509 7.3663 37 1 5.7106 -4.0434 9.9422 38 1 4.2192 1.4492 0.9871 39 1 4.5663 3.8550 1.3725 40 1 1.7510 3.7525 4.5800 41 1 1.3934 1.3484 4.1932 42 1 1.9122 1.0011 -2.4378 43 1 1.9261 -0.5592 -3.2940 44 1 0.4589 -0.0266 -2.4379 45 1 3.8030 -1.3532 -0.3065 46 1 3.8210 -1.3118 -2.0857 47 1 3.9187 0.2051 -1.1590 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000044865580.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:07:14 Heat of formation + Delta-G solvation = 67.193403 kcal Electronic energy + Delta-G solvation = -30077.924125 eV Core-core repulsion = 25917.175533 eV Total energy + Delta-G solvation = -4160.748592 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 364.143 amu Computer time = 1.02 seconds Orbital eigenvalues (eV) -49.37820 -43.10397 -39.56053 -38.23448 -34.90005 -33.75357 -32.33505 -31.79828 -30.97644 -29.95368 -29.64095 -27.77375 -25.40531 -24.97818 -24.07630 -23.86562 -22.67435 -22.29307 -21.02484 -20.29170 -18.57187 -18.07367 -17.22791 -16.80303 -16.54712 -16.11099 -16.02099 -15.87102 -15.56280 -15.06552 -14.96162 -14.51512 -14.19036 -14.01217 -13.85619 -13.80918 -13.67698 -13.60248 -13.03864 -12.89020 -12.65750 -12.50500 -12.16245 -12.01489 -11.85890 -11.79495 -11.74644 -11.67594 -11.33644 -11.04506 -10.80790 -10.66847 -10.60010 -10.38658 -10.01829 -9.74920 -9.72158 -9.69740 -9.19999 -9.11327 -8.69832 -8.44589 -7.36049 -6.09243 -4.13338 0.33120 0.61363 1.31042 1.56634 2.34894 2.73637 2.82735 2.89508 3.32248 3.35933 3.39850 3.52934 3.68660 3.92327 4.15251 4.25786 4.41621 4.55013 4.59510 4.68909 4.75591 4.81306 4.98038 5.02167 5.20251 5.23480 5.27118 5.27212 5.30532 5.32720 5.37486 5.47565 5.49673 5.55498 5.59809 5.70468 5.76498 5.90551 5.94893 5.97987 6.14963 6.17813 6.59679 6.63517 6.65954 6.79738 7.45709 7.51808 7.86591 8.22666 8.69709 8.91107 9.51087 11.01663 Molecular weight = 364.14amu Principal moments of inertia in cm(-1) A = 0.009461 B = 0.002731 C = 0.002232 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2958.783048 B =10250.860489 C =12544.063938 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C 0.177 3.823 3 H 0.056 0.944 4 C 0.179 3.821 5 N -0.250 5.250 6 N -0.289 5.289 7 C 0.181 3.819 8 S -0.027 6.027 9 C -0.075 4.075 10 C 0.037 3.963 11 C -0.519 4.519 12 H 0.061 0.939 13 C 0.061 3.939 14 N -0.893 5.893 15 Si 0.899 3.101 16 H -0.275 1.275 17 H -0.286 1.286 18 H -0.275 1.275 19 N -0.428 5.428 20 C 0.105 3.895 21 C -0.075 4.075 22 C -0.141 4.141 23 C 0.114 3.886 24 F -0.132 7.132 25 C -0.136 4.136 26 C -0.065 4.065 27 N -0.526 5.526 28 C 0.023 3.977 29 C 0.024 3.976 30 H 0.061 0.939 31 H 0.069 0.931 32 H 0.078 0.922 33 H 0.086 0.914 34 H 0.085 0.915 35 H 0.027 0.973 36 H 0.027 0.973 37 H 0.264 0.736 38 H 0.137 0.863 39 H 0.147 0.853 40 H 0.150 0.850 41 H 0.146 0.854 42 H 0.025 0.975 43 H 0.074 0.926 44 H 0.075 0.925 45 H 0.070 0.930 46 H 0.074 0.926 47 H 0.021 0.979 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.204 18.647 -20.238 28.447 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C 0.066 3.934 3 H 0.073 0.927 4 C -0.089 4.089 5 N -0.088 5.088 6 N -0.132 5.132 7 C -0.191 4.191 8 S 0.204 5.796 9 C -0.223 4.223 10 C -0.003 4.003 11 C -0.559 4.559 12 H 0.079 0.921 13 C -0.142 4.142 14 N -0.531 5.531 15 Si 0.726 3.274 16 H -0.200 1.200 17 H -0.212 1.212 18 H -0.200 1.200 19 N -0.121 5.121 20 C 0.014 3.986 21 C -0.095 4.095 22 C -0.160 4.160 23 C 0.095 3.905 24 F -0.111 7.111 25 C -0.155 4.155 26 C -0.085 4.085 27 N -0.251 5.251 28 C -0.125 4.125 29 C -0.124 4.124 30 H 0.080 0.920 31 H 0.088 0.912 32 H 0.097 0.903 33 H 0.104 0.896 34 H 0.104 0.896 35 H 0.046 0.954 36 H 0.046 0.954 37 H 0.073 0.927 38 H 0.155 0.845 39 H 0.165 0.835 40 H 0.168 0.832 41 H 0.163 0.837 42 H 0.044 0.956 43 H 0.093 0.907 44 H 0.094 0.906 45 H 0.089 0.911 46 H 0.093 0.907 47 H 0.040 0.960 Dipole moment (debyes) X Y Z Total from point charges -7.185 17.670 -19.708 27.427 hybrid contribution 0.401 0.337 -0.052 0.526 sum -6.784 18.007 -19.760 27.581 Atomic orbital electron populations 1.21883 0.91903 1.04171 1.02134 1.19808 0.96346 0.93145 0.84062 0.92657 1.24728 1.02647 0.90715 0.90848 1.74025 1.15395 1.10122 1.09240 1.74882 1.16175 1.20373 1.01775 1.27492 1.04998 0.85761 1.00830 1.85840 1.73461 1.18260 1.02042 1.24034 1.05848 0.88060 1.04401 1.18972 0.96291 0.98230 0.86772 1.21016 1.41714 0.91212 1.01937 0.92060 1.25000 0.95051 0.97853 0.96263 1.69954 1.41135 1.32927 1.09119 0.86544 0.78542 0.84732 0.77579 1.20032 1.21207 1.20030 1.43825 1.48462 1.04887 1.14954 1.17575 0.99980 0.81231 0.99829 1.20977 0.95598 0.93605 0.99320 1.21014 1.01666 0.94423 0.98910 1.17779 0.97772 0.78290 0.96664 1.91542 1.93874 1.31538 1.94105 1.21089 0.99567 0.93992 1.00882 1.21103 0.97692 0.93732 0.95964 1.61848 1.10921 1.51531 1.00829 1.22482 1.01656 0.96469 0.91877 1.22425 0.86585 0.99731 1.03667 0.92002 0.91193 0.90280 0.89552 0.89585 0.95440 0.95419 0.92683 0.84523 0.83543 0.83244 0.83665 0.95616 0.90744 0.90603 0.91131 0.90686 0.96002 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.27 8.94 37.16 0.33 -0.94 16 2 C 0.18 1.84 2.47 -68.86 -0.17 1.67 16 3 H 0.06 0.51 6.94 -51.93 -0.36 0.15 16 4 C 0.18 2.51 5.26 -153.79 -0.81 1.70 16 5 N -0.25 -4.39 11.85 33.04 0.39 -4.00 16 6 N -0.29 -5.58 11.60 30.73 0.36 -5.22 16 7 C 0.18 3.13 8.01 -88.10 -0.71 2.42 16 8 S -0.03 -0.47 22.00 -107.50 -2.36 -2.84 16 9 C -0.08 -1.59 5.17 37.15 0.19 -1.39 16 10 C 0.04 0.93 4.98 -27.89 -0.14 0.79 16 11 C -0.52 -14.38 9.11 -34.44 -0.31 -14.69 16 12 H 0.06 1.66 7.74 -52.49 -0.41 1.25 16 13 C 0.06 1.70 5.46 -17.82 -0.10 1.60 16 14 N -0.89 -26.18 13.29 55.43 0.74 -25.44 16 15 Si 0.90 21.42 29.54 -169.99 -5.02 16.40 16 16 H -0.27 -6.46 7.11 56.52 0.40 -6.06 16 17 H -0.29 -6.74 7.11 56.52 0.40 -6.33 16 18 H -0.27 -6.45 7.11 56.52 0.40 -6.05 16 19 N -0.43 -6.00 2.85 -57.62 -0.16 -6.17 16 20 C 0.11 1.18 5.16 -83.55 -0.43 0.75 16 21 C -0.08 -0.69 9.11 -39.42 -0.36 -1.05 16 22 C -0.14 -1.08 10.02 -39.54 -0.40 -1.48 16 23 C 0.11 0.97 7.30 -39.40 -0.29 0.68 16 24 F -0.13 -1.18 17.27 2.25 0.04 -1.15 16 25 C -0.14 -1.12 10.02 -39.54 -0.40 -1.52 16 26 C -0.07 -0.65 9.91 -39.42 -0.39 -1.04 16 27 N -0.53 -5.32 4.88 -244.58 -1.19 -6.52 16 28 C 0.02 0.16 9.21 60.07 0.55 0.71 16 29 C 0.02 0.24 9.26 60.07 0.56 0.80 16 30 H 0.06 0.54 8.14 -51.93 -0.42 0.11 16 31 H 0.07 0.46 6.40 -51.93 -0.33 0.12 16 32 H 0.08 0.83 8.14 -51.93 -0.42 0.41 16 33 H 0.09 1.85 8.14 -51.92 -0.42 1.42 16 34 H 0.09 1.85 8.14 -51.92 -0.42 1.43 16 35 H 0.03 0.73 8.14 -51.93 -0.42 0.30 16 36 H 0.03 0.73 8.14 -51.93 -0.42 0.30 16 37 H 0.26 7.30 8.31 -40.82 -0.34 6.96 16 38 H 0.14 1.15 8.06 -52.49 -0.42 0.72 16 39 H 0.15 0.79 8.06 -52.49 -0.42 0.37 16 40 H 0.15 0.93 8.06 -52.49 -0.42 0.51 16 41 H 0.15 1.45 8.06 -52.48 -0.42 1.02 16 42 H 0.03 0.15 8.14 -51.93 -0.42 -0.27 16 43 H 0.07 0.46 8.12 -51.93 -0.42 0.03 16 44 H 0.08 0.46 6.30 -51.93 -0.33 0.13 16 45 H 0.07 0.91 6.74 -51.93 -0.35 0.56 16 46 H 0.07 0.65 8.12 -51.93 -0.42 0.23 16 47 H 0.02 0.18 8.14 -51.93 -0.42 -0.24 16 LS Contribution 410.00 15.07 6.18 6.18 Total: -1.00 -31.92 410.00 -10.73 -42.65 By element: Atomic # 1 Polarization: 3.93 SS G_CDS: -6.83 Total: -2.90 kcal Atomic # 6 Polarization: -8.13 SS G_CDS: -2.86 Total: -10.99 kcal Atomic # 7 Polarization: -47.48 SS G_CDS: 0.13 Total: -47.35 kcal Atomic # 9 Polarization: -1.18 SS G_CDS: 0.04 Total: -1.15 kcal Atomic # 14 Polarization: 21.42 SS G_CDS: -5.02 Total: 16.40 kcal Atomic # 16 Polarization: -0.47 SS G_CDS: -2.36 Total: -2.84 kcal Total LS contribution 6.18 Total: 6.18 kcal Total: -31.92 -10.73 -42.65 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000044865580.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 109.846 kcal (2) G-P(sol) polarization free energy of solvation -31.923 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 77.923 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.729 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.652 kcal (6) G-S(sol) free energy of system = (1) + (5) 67.193 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.02 seconds