Wall clock time and date at job start Tue Mar 31 2020 05:07:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.09002 * 109.47070 * 2 1 4 4 C 1.50703 * 109.46966 * 119.99910 * 2 1 3 5 5 N 1.30317 * 126.35308 * 75.02552 * 4 2 1 6 6 N 1.28507 * 110.14092 * 179.97438 * 5 4 2 7 7 C 1.31296 * 109.91718 * 359.97438 * 6 5 4 8 8 S 1.76197 * 126.50203 * 180.02562 * 7 6 5 9 9 C 1.81009 * 99.99975 * 359.97438 * 8 7 6 10 10 C 1.52994 * 109.47264 * 180.02562 * 9 8 7 11 11 C 1.50699 * 109.47107 * 180.02562 * 10 9 8 12 12 H 1.07990 * 120.00264 * 0.02562 * 11 10 9 13 13 C 1.37879 * 119.99710 * 179.97438 * 11 10 9 14 14 N 1.31515 * 120.00118 * 0.02562 * 13 11 10 15 15 Si 1.86807 * 119.99905 * 179.97438 * 13 11 10 16 16 H 1.48499 * 109.46754 * 60.00359 * 15 13 11 17 17 H 1.48493 * 109.47254 * 180.02562 * 15 13 11 18 18 H 1.48500 * 109.47074 * 300.00512 * 15 13 11 19 19 N 1.36780 * 106.99995 * 359.76046 * 7 6 5 20 20 C 1.40322 * 127.17897 * 180.25594 * 19 7 6 21 21 C 1.38806 * 120.03668 * 114.86236 * 20 19 7 22 22 C 1.38114 * 119.95876 * 179.77490 * 21 20 19 23 23 C 1.38481 * 120.04150 * 0.48117 * 22 21 20 24 24 F 1.35098 * 119.96116 * 179.77083 * 23 22 21 25 25 C 1.38481 * 120.07321 * 359.79360 * 23 22 21 26 26 C 1.38109 * 120.04022 * 359.95504 * 25 23 22 27 27 N 1.46899 * 109.47394 * 239.99962 * 2 1 3 28 28 C 1.46904 * 111.00029 * 59.99847 * 27 2 1 29 29 C 1.46901 * 111.00056 * 183.95896 * 27 2 1 30 30 H 1.08996 * 109.47407 * 300.00400 * 1 2 3 31 31 H 1.09000 * 109.46986 * 60.00171 * 1 2 3 32 32 H 1.09002 * 109.47075 * 179.97438 * 1 2 3 33 33 H 1.09001 * 109.47057 * 300.00225 * 9 8 7 34 34 H 1.08996 * 109.46901 * 60.00090 * 9 8 7 35 35 H 1.09001 * 109.47105 * 299.99997 * 10 9 8 36 36 H 1.08998 * 109.47236 * 59.99568 * 10 9 8 37 37 H 0.97005 * 119.99489 * 179.97438 * 14 13 11 38 38 H 1.07994 * 120.02025 * 0.02718 * 21 20 19 39 39 H 1.08000 * 119.97821 * 180.23235 * 22 21 20 40 40 H 1.08000 * 119.97699 * 179.97438 * 25 23 22 41 41 H 1.08005 * 120.01903 * 180.02562 * 26 25 23 42 42 H 1.09003 * 109.46442 * 60.00214 * 28 27 2 43 43 H 1.09005 * 109.46832 * 179.97438 * 28 27 2 44 44 H 1.08995 * 109.47167 * 300.00240 * 28 27 2 45 45 H 1.08997 * 109.47290 * 59.99585 * 29 27 2 46 46 H 1.09001 * 109.47028 * 179.97438 * 29 27 2 47 47 H 1.09001 * 109.46536 * 299.99508 * 29 27 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0323 -0.7104 1.2305 5 7 2.0341 -1.9978 1.4326 6 7 2.5333 -2.2639 2.5864 7 6 2.8816 -1.1514 3.1905 8 16 3.6093 -1.0101 4.7889 9 6 3.6948 -2.7582 5.2509 10 6 4.3112 -2.8876 6.6452 11 6 4.3830 -4.3430 7.0296 12 1 4.0253 -5.0999 6.3475 13 6 4.9065 -4.7082 8.2517 14 7 5.3427 -3.7864 9.0822 15 14 4.9949 -6.5122 8.7285 16 1 5.8344 -7.2433 7.7457 17 1 5.5932 -6.6378 10.0817 18 1 3.6267 -7.0895 8.7372 19 7 2.5780 -0.1232 2.3410 20 6 2.7803 1.2476 2.5625 21 6 3.6770 1.9540 1.7728 22 6 3.8715 3.3042 1.9892 23 6 3.1799 3.9511 2.9997 24 9 3.3749 5.2708 3.2129 25 6 2.2892 3.2465 3.7921 26 6 2.0884 1.8974 3.5752 27 7 2.0198 -0.6925 -1.1994 28 6 1.5487 -0.0264 -2.4211 29 6 3.4852 -0.7946 -1.1869 30 1 -0.3634 0.5139 0.8899 31 1 -0.3633 0.5138 -0.8900 32 1 -0.3633 -1.0277 -0.0005 33 1 2.6906 -3.1819 5.2573 34 1 4.3111 -3.2948 4.5296 35 1 5.3155 -2.4638 6.6393 36 1 3.6947 -2.3509 7.3663 37 1 5.7106 -4.0434 9.9422 38 1 4.2192 1.4492 0.9871 39 1 4.5663 3.8550 1.3725 40 1 1.7510 3.7525 4.5800 41 1 1.3934 1.3484 4.1932 42 1 1.9122 1.0011 -2.4378 43 1 1.9261 -0.5592 -3.2940 44 1 0.4589 -0.0266 -2.4379 45 1 3.8030 -1.3532 -0.3065 46 1 3.8210 -1.3118 -2.0857 47 1 3.9187 0.2051 -1.1590 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000044865580.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:07:13 Heat of formation + Delta-G solvation = 50.215615 kcal Electronic energy + Delta-G solvation = -30078.660338 eV Core-core repulsion = 25917.175533 eV Total energy + Delta-G solvation = -4161.484805 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 364.143 amu Computer time = 4.18 seconds Orbital eigenvalues (eV) -50.06421 -44.29206 -40.34126 -38.99932 -35.98992 -35.76550 -33.25492 -32.97417 -32.48517 -31.00360 -30.49648 -28.50162 -27.36516 -25.86446 -25.04158 -24.62298 -23.70343 -23.56460 -22.59836 -21.20701 -19.55110 -18.81247 -18.70205 -18.10504 -17.95237 -16.97975 -16.86551 -16.70504 -16.53040 -16.43520 -15.84030 -15.69882 -15.57683 -15.40143 -14.84649 -14.71613 -14.50508 -14.40615 -14.17526 -13.80302 -13.72480 -13.57799 -13.35987 -13.13020 -12.98591 -12.79166 -12.74196 -12.54368 -12.53960 -12.47167 -12.36447 -12.26588 -12.06955 -11.76252 -11.70556 -11.52218 -11.16124 -11.03444 -10.60058 -10.41131 -9.90538 -9.38889 -8.78425 -8.24619 -6.36598 -0.45245 -0.07792 -0.04208 0.41741 1.05993 1.34017 1.42311 1.44345 1.52726 1.56857 2.17393 2.40738 2.79520 2.98774 3.00923 3.09351 3.47798 3.58838 3.71787 3.89825 3.94655 3.99906 4.05080 4.16563 4.17043 4.27835 4.32757 4.34809 4.42849 4.60003 4.61634 4.64345 4.67298 4.74834 4.75449 4.80185 4.83291 4.85704 4.91718 5.04575 5.06138 5.21968 5.34164 5.43125 5.43283 5.71476 5.77440 5.87584 6.01637 6.10134 6.75162 7.32393 7.44320 8.86760 Molecular weight = 364.14amu Principal moments of inertia in cm(-1) A = 0.009461 B = 0.002731 C = 0.002232 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2958.783048 B =10250.860489 C =12544.063938 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.139 4.139 2 C 0.178 3.822 3 H 0.076 0.924 4 C 0.203 3.797 5 N -0.290 5.290 6 N -0.324 5.324 7 C 0.164 3.836 8 S 0.006 5.994 9 C -0.069 4.069 10 C 0.046 3.954 11 C -0.543 4.543 12 H 0.062 0.938 13 C 0.009 3.991 14 N -0.927 5.927 15 Si 0.966 3.034 16 H -0.268 1.268 17 H -0.279 1.279 18 H -0.267 1.267 19 N -0.417 5.417 20 C 0.075 3.925 21 C -0.073 4.073 22 C -0.128 4.128 23 C 0.115 3.885 24 F -0.133 7.133 25 C -0.130 4.130 26 C -0.073 4.073 27 N -0.546 5.546 28 C 0.023 3.977 29 C 0.028 3.972 30 H 0.062 0.938 31 H 0.100 0.900 32 H 0.058 0.942 33 H 0.079 0.921 34 H 0.077 0.923 35 H 0.008 0.992 36 H 0.010 0.990 37 H 0.267 0.733 38 H 0.145 0.855 39 H 0.175 0.825 40 H 0.170 0.830 41 H 0.140 0.860 42 H 0.041 0.959 43 H 0.081 0.919 44 H 0.085 0.915 45 H 0.034 0.966 46 H 0.085 0.915 47 H 0.040 0.960 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.535 20.620 -22.079 31.136 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.197 4.197 2 C 0.067 3.933 3 H 0.093 0.907 4 C -0.067 4.067 5 N -0.128 5.128 6 N -0.167 5.167 7 C -0.210 4.210 8 S 0.236 5.764 9 C -0.218 4.218 10 C 0.007 3.993 11 C -0.583 4.583 12 H 0.080 0.920 13 C -0.190 4.190 14 N -0.566 5.566 15 Si 0.790 3.210 16 H -0.193 1.193 17 H -0.204 1.204 18 H -0.192 1.192 19 N -0.109 5.109 20 C -0.015 4.015 21 C -0.092 4.092 22 C -0.147 4.147 23 C 0.095 3.905 24 F -0.111 7.111 25 C -0.149 4.149 26 C -0.093 4.093 27 N -0.272 5.272 28 C -0.124 4.124 29 C -0.120 4.120 30 H 0.081 0.919 31 H 0.119 0.881 32 H 0.077 0.923 33 H 0.098 0.902 34 H 0.096 0.904 35 H 0.026 0.974 36 H 0.028 0.972 37 H 0.076 0.924 38 H 0.162 0.838 39 H 0.192 0.808 40 H 0.187 0.813 41 H 0.157 0.843 42 H 0.060 0.940 43 H 0.100 0.900 44 H 0.104 0.896 45 H 0.053 0.947 46 H 0.104 0.896 47 H 0.058 0.942 Dipole moment (debyes) X Y Z Total from point charges -7.523 19.664 -21.569 30.141 hybrid contribution 0.469 -0.089 0.393 0.618 sum -7.054 19.575 -21.176 29.688 Atomic orbital electron populations 1.21881 0.90728 1.03347 1.03752 1.20049 0.97147 0.93442 0.82689 0.90665 1.25481 0.99806 0.90005 0.91377 1.73943 1.17382 1.12346 1.09096 1.74776 1.17143 1.21957 1.02844 1.27228 1.06113 0.86689 1.00953 1.85467 1.74143 1.14026 1.02798 1.23574 1.04771 0.91374 1.02061 1.18715 0.95022 0.96944 0.88611 1.21429 1.41855 0.92580 1.02413 0.92016 1.25896 0.94453 1.02538 0.96149 1.70066 1.41828 1.35144 1.09575 0.85478 0.78892 0.79111 0.77476 1.19261 1.20448 1.19226 1.43873 1.47321 1.05643 1.14043 1.17907 1.02055 0.79877 1.01668 1.21057 0.95001 0.94071 0.99116 1.21257 1.01206 0.93711 0.98483 1.17904 0.97631 0.78235 0.96712 1.91549 1.93840 1.31613 1.94108 1.21257 0.99324 0.93206 1.01094 1.21106 0.97912 0.94460 0.95800 1.61825 1.10925 1.52701 1.01741 1.22563 1.02274 0.97134 0.90402 1.22350 0.86920 1.00325 1.02431 0.91858 0.88117 0.92306 0.90214 0.90386 0.97376 0.97210 0.92403 0.83754 0.80758 0.81298 0.84252 0.94026 0.90018 0.89647 0.94740 0.89649 0.94173 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.23 8.94 71.98 0.64 -1.59 16 2 C 0.18 3.38 2.47 44.17 0.11 3.49 16 3 H 0.08 1.15 6.94 -2.39 -0.02 1.13 16 4 C 0.20 5.66 5.26 137.56 0.72 6.39 16 5 N -0.29 -10.53 11.85 -49.39 -0.59 -11.12 16 6 N -0.32 -13.04 11.60 -56.70 -0.66 -13.70 16 7 C 0.16 5.82 8.01 179.47 1.44 7.26 16 8 S 0.01 0.21 22.00 -56.49 -1.24 -1.04 16 9 C -0.07 -3.05 5.17 71.98 0.37 -2.68 16 10 C 0.05 2.43 4.98 29.85 0.15 2.58 16 11 C -0.54 -30.98 9.11 25.60 0.23 -30.75 16 12 H 0.06 3.43 7.74 -2.92 -0.02 3.40 16 13 C 0.01 0.50 5.46 84.66 0.46 0.96 16 14 N -0.93 -55.40 13.29 21.45 0.28 -55.11 16 15 Si 0.97 44.27 29.54 68.60 2.03 46.29 16 16 H -0.27 -11.88 7.11 99.48 0.71 -11.17 16 17 H -0.28 -12.38 7.11 99.48 0.71 -11.67 16 18 H -0.27 -11.85 7.11 99.48 0.71 -11.15 16 19 N -0.42 -11.66 2.85 -336.20 -0.96 -12.61 16 20 C 0.08 1.60 5.16 38.05 0.20 1.79 16 21 C -0.07 -1.16 9.11 22.38 0.20 -0.96 16 22 C -0.13 -1.54 10.02 22.30 0.22 -1.32 16 23 C 0.11 1.61 7.30 22.39 0.16 1.77 16 24 F -0.13 -1.99 17.27 44.97 0.78 -1.21 16 25 C -0.13 -1.86 10.02 22.30 0.22 -1.64 16 26 C -0.07 -1.37 9.91 22.37 0.22 -1.15 16 27 N -0.55 -10.11 4.88 -927.70 -4.52 -14.64 16 28 C 0.02 0.25 9.21 127.69 1.18 1.42 16 29 C 0.03 0.52 9.26 127.69 1.18 1.71 16 30 H 0.06 1.00 8.14 -2.39 -0.02 0.98 16 31 H 0.10 0.99 6.40 -2.39 -0.02 0.98 16 32 H 0.06 1.20 8.14 -2.39 -0.02 1.18 16 33 H 0.08 3.59 8.14 -2.39 -0.02 3.57 16 34 H 0.08 3.53 8.14 -2.40 -0.02 3.51 16 35 H 0.01 0.44 8.14 -2.39 -0.02 0.42 16 36 H 0.01 0.53 8.14 -2.39 -0.02 0.51 16 37 H 0.27 14.97 8.31 -92.70 -0.77 14.20 16 38 H 0.14 2.06 8.06 -2.91 -0.02 2.04 16 39 H 0.18 1.14 8.06 -2.91 -0.02 1.12 16 40 H 0.17 1.70 8.06 -2.91 -0.02 1.68 16 41 H 0.14 2.74 8.06 -2.91 -0.02 2.72 16 42 H 0.04 0.33 8.14 -2.39 -0.02 0.31 16 43 H 0.08 0.78 8.12 -2.38 -0.02 0.76 16 44 H 0.08 0.75 6.30 -2.39 -0.02 0.74 16 45 H 0.03 0.89 6.74 -2.39 -0.02 0.88 16 46 H 0.08 1.38 8.12 -2.39 -0.02 1.36 16 47 H 0.04 0.58 8.14 -2.39 -0.02 0.56 16 Total: -1.00 -71.62 410.00 3.82 -67.80 By element: Atomic # 1 Polarization: 7.08 SS G_CDS: 0.98 Total: 8.06 kcal Atomic # 6 Polarization: -20.44 SS G_CDS: 7.72 Total: -12.72 kcal Atomic # 7 Polarization: -100.74 SS G_CDS: -6.44 Total: -107.18 kcal Atomic # 9 Polarization: -1.99 SS G_CDS: 0.78 Total: -1.21 kcal Atomic # 14 Polarization: 44.27 SS G_CDS: 2.03 Total: 46.29 kcal Atomic # 16 Polarization: 0.21 SS G_CDS: -1.24 Total: -1.04 kcal Total: -71.62 3.82 -67.80 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000044865580.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 118.018 kcal (2) G-P(sol) polarization free energy of solvation -71.620 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 46.398 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.818 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.803 kcal (6) G-S(sol) free energy of system = (1) + (5) 50.216 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 4.18 seconds