Wall clock time and date at job start Tue Mar 31 2020 05:07:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.09002 * 109.47026 * 2 1 4 4 C 1.50700 * 109.47115 * 239.99605 * 2 1 3 5 5 N 1.30317 * 126.35139 * 284.68399 * 4 2 1 6 6 N 1.28510 * 110.14028 * 179.88609 * 5 4 2 7 7 C 1.31303 * 109.91610 * 0.39187 * 6 5 4 8 8 S 1.76204 * 126.50328 * 179.72916 * 7 6 5 9 9 C 1.81005 * 99.99727 * 0.04487 * 8 7 6 10 10 C 1.52998 * 109.46713 * 179.97438 * 9 8 7 11 11 C 1.50698 * 109.46652 * 180.02562 * 10 9 8 12 12 H 1.07996 * 120.00858 * 359.97438 * 11 10 9 13 13 C 1.37886 * 119.99698 * 179.97438 * 11 10 9 14 14 N 1.31508 * 119.99839 * 359.97438 * 13 11 10 15 15 Si 1.86803 * 119.99927 * 179.97438 * 13 11 10 16 16 H 1.48503 * 109.46669 * 60.00266 * 15 13 11 17 17 H 1.48496 * 109.47127 * 180.02562 * 15 13 11 18 18 H 1.48502 * 109.47136 * 300.00308 * 15 13 11 19 19 N 1.36779 * 106.99699 * 359.76870 * 7 6 5 20 20 C 1.40327 * 127.17436 * 180.02562 * 19 7 6 21 21 C 1.38801 * 120.04026 * 114.70446 * 20 19 7 22 22 C 1.38119 * 119.96066 * 179.74681 * 21 20 19 23 23 C 1.38479 * 120.03844 * 0.49922 * 22 21 20 24 24 F 1.35097 * 119.96176 * 179.74911 * 23 22 21 25 25 C 1.38473 * 120.07702 * 359.77339 * 23 22 21 26 26 C 1.38119 * 120.03864 * 359.97425 * 25 23 22 27 27 N 1.46906 * 109.47009 * 119.99603 * 2 1 3 28 28 C 1.46901 * 110.99793 * 300.00244 * 27 2 1 29 29 C 1.46898 * 110.99820 * 176.04560 * 27 2 1 30 30 H 1.08994 * 109.47232 * 300.00371 * 1 2 3 31 31 H 1.09001 * 109.46911 * 60.00343 * 1 2 3 32 32 H 1.09002 * 109.47026 * 179.97438 * 1 2 3 33 33 H 1.08993 * 109.47177 * 300.00012 * 9 8 7 34 34 H 1.09001 * 109.46723 * 60.00126 * 9 8 7 35 35 H 1.08998 * 109.47109 * 299.99709 * 10 9 8 36 36 H 1.08992 * 109.47233 * 60.00435 * 10 9 8 37 37 H 0.97007 * 119.99930 * 180.02562 * 14 13 11 38 38 H 1.08003 * 120.01631 * 359.97099 * 21 20 19 39 39 H 1.08000 * 119.97736 * 180.25235 * 22 21 20 40 40 H 1.08001 * 119.97985 * 179.97438 * 25 23 22 41 41 H 1.08007 * 120.01808 * 180.02562 * 26 25 23 42 42 H 1.09002 * 109.47401 * 59.99808 * 28 27 2 43 43 H 1.09001 * 109.46874 * 299.99821 * 28 27 2 44 44 H 1.09004 * 109.46970 * 179.97438 * 28 27 2 45 45 H 1.09007 * 109.46909 * 183.95407 * 29 27 2 46 46 H 1.08998 * 109.47110 * 303.95014 * 29 27 2 47 47 H 1.09002 * 109.47061 * 63.95596 * 29 27 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0323 -0.7105 -1.2304 5 7 2.0390 -1.9982 -1.4302 6 7 2.5339 -2.2642 -2.5860 7 6 2.8815 -1.1516 -3.1904 8 16 3.6093 -1.0105 -4.7889 9 6 3.6957 -2.7586 -5.2503 10 6 4.3124 -2.8880 -6.6445 11 6 4.3838 -4.3434 -7.0289 12 1 4.0256 -5.1004 -6.3470 13 6 4.9064 -4.7087 -8.2515 14 7 5.3422 -3.7870 -9.0821 15 14 4.9956 -6.5128 -8.7277 16 1 3.6277 -7.0908 -8.7352 17 1 5.5940 -6.6385 -10.0810 18 1 5.8363 -7.2431 -7.7454 19 7 2.5722 -0.1230 -2.3436 20 6 2.7668 1.2484 -2.5687 21 6 1.6737 2.0971 -2.6745 22 6 1.8673 3.4475 -2.8908 23 6 3.1508 3.9530 -3.0125 24 9 3.3382 5.2733 -3.2291 25 6 4.2423 3.1068 -2.9129 26 6 4.0525 1.7567 -2.6914 27 7 2.0197 -0.6924 1.1995 28 6 1.5486 -0.0262 2.4211 29 6 3.4851 -0.7945 1.1871 30 1 -0.3633 0.5139 0.8899 31 1 -0.3633 0.5138 -0.8900 32 1 -0.3633 -1.0277 -0.0005 33 1 4.3120 -3.2948 -4.5288 34 1 2.6916 -3.1826 -5.2567 35 1 3.6957 -2.3519 -7.3658 36 1 5.3164 -2.4639 -6.6385 37 1 5.7095 -4.0439 -9.9424 38 1 0.6725 1.7025 -2.5840 39 1 1.0170 4.1088 -2.9691 40 1 5.2426 3.5027 -3.0085 41 1 4.9042 1.0970 -2.6133 42 1 0.4587 -0.0264 2.4379 43 1 1.9121 1.0013 2.4378 44 1 1.9251 -0.5595 3.2941 45 1 3.8164 -1.3721 2.0502 46 1 3.8069 -1.2916 0.2720 47 1 3.9192 0.2044 1.2301 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000044865584.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:07:19 Heat of formation + Delta-G solvation = 67.297521 kcal Electronic energy + Delta-G solvation = -30065.879912 eV Core-core repulsion = 25905.135835 eV Total energy + Delta-G solvation = -4160.744078 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 364.143 amu Computer time = 1.07 seconds Orbital eigenvalues (eV) -49.37635 -43.10259 -39.55441 -38.22303 -34.89820 -33.75330 -32.38924 -31.73238 -30.97613 -29.94367 -29.66670 -27.75407 -25.39948 -24.96824 -24.06909 -23.84251 -22.71261 -22.29651 -21.02496 -20.24755 -18.60962 -18.04115 -17.21321 -16.74074 -16.54073 -16.27838 -16.03813 -15.79072 -15.56571 -15.00941 -14.98528 -14.51485 -14.19055 -14.00571 -13.85329 -13.83321 -13.62130 -13.58360 -13.08494 -12.85990 -12.64699 -12.49954 -12.16381 -12.02520 -11.84854 -11.80946 -11.71530 -11.68688 -11.34191 -11.04478 -10.79242 -10.66615 -10.60797 -10.38659 -10.01773 -9.75805 -9.71145 -9.68791 -9.19986 -9.11432 -8.69275 -8.44602 -7.35918 -6.09217 -4.13290 0.33426 0.62041 1.31481 1.56439 2.35230 2.73670 2.82862 2.89670 3.32258 3.35932 3.39855 3.54632 3.69267 3.92201 4.15736 4.26535 4.41650 4.55523 4.60157 4.69815 4.74418 4.82512 4.99800 5.02021 5.19957 5.26403 5.27151 5.27913 5.29602 5.32927 5.38278 5.45501 5.51369 5.55496 5.59367 5.71479 5.78525 5.88324 5.95092 5.98059 6.15300 6.17871 6.60517 6.64397 6.66034 6.80106 7.45751 7.51895 7.86594 8.22707 8.69797 8.91133 9.51099 11.01700 Molecular weight = 364.14amu Principal moments of inertia in cm(-1) A = 0.009438 B = 0.002728 C = 0.002234 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2965.958331 B =10259.606678 C =12530.408435 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C 0.178 3.822 3 H 0.055 0.945 4 C 0.179 3.821 5 N -0.250 5.250 6 N -0.289 5.289 7 C 0.181 3.819 8 S -0.027 6.027 9 C -0.075 4.075 10 C 0.037 3.963 11 C -0.519 4.519 12 H 0.061 0.939 13 C 0.061 3.939 14 N -0.893 5.893 15 Si 0.899 3.101 16 H -0.275 1.275 17 H -0.286 1.286 18 H -0.275 1.275 19 N -0.428 5.428 20 C 0.104 3.896 21 C -0.074 4.074 22 C -0.141 4.141 23 C 0.114 3.886 24 F -0.132 7.132 25 C -0.137 4.137 26 C -0.066 4.066 27 N -0.526 5.526 28 C 0.023 3.977 29 C 0.025 3.975 30 H 0.070 0.930 31 H 0.060 0.940 32 H 0.079 0.921 33 H 0.086 0.914 34 H 0.086 0.914 35 H 0.027 0.973 36 H 0.027 0.973 37 H 0.264 0.736 38 H 0.141 0.859 39 H 0.148 0.852 40 H 0.149 0.851 41 H 0.144 0.856 42 H 0.075 0.925 43 H 0.025 0.975 44 H 0.074 0.926 45 H 0.074 0.926 46 H 0.069 0.931 47 H 0.023 0.977 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.994 18.637 20.371 28.482 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C 0.067 3.933 3 H 0.073 0.927 4 C -0.090 4.090 5 N -0.088 5.088 6 N -0.132 5.132 7 C -0.191 4.191 8 S 0.204 5.796 9 C -0.223 4.223 10 C -0.003 4.003 11 C -0.559 4.559 12 H 0.079 0.921 13 C -0.142 4.142 14 N -0.531 5.531 15 Si 0.726 3.274 16 H -0.200 1.200 17 H -0.212 1.212 18 H -0.200 1.200 19 N -0.121 5.121 20 C 0.012 3.988 21 C -0.093 4.093 22 C -0.160 4.160 23 C 0.095 3.905 24 F -0.111 7.111 25 C -0.157 4.157 26 C -0.086 4.086 27 N -0.251 5.251 28 C -0.125 4.125 29 C -0.123 4.123 30 H 0.089 0.911 31 H 0.079 0.921 32 H 0.098 0.902 33 H 0.104 0.896 34 H 0.104 0.896 35 H 0.046 0.954 36 H 0.046 0.954 37 H 0.073 0.927 38 H 0.158 0.842 39 H 0.165 0.835 40 H 0.167 0.833 41 H 0.162 0.838 42 H 0.094 0.906 43 H 0.044 0.956 44 H 0.092 0.908 45 H 0.093 0.907 46 H 0.087 0.913 47 H 0.041 0.959 Dipole moment (debyes) X Y Z Total from point charges -6.973 17.660 19.841 27.462 hybrid contribution 0.332 0.343 0.006 0.477 sum -6.641 18.003 19.847 27.606 Atomic orbital electron populations 1.21906 0.91936 1.04239 1.02068 1.19797 0.96213 0.93195 0.84137 0.92703 1.24728 1.02883 0.90714 0.90640 1.74027 1.15379 1.10142 1.09238 1.74885 1.16246 1.20386 1.01694 1.27494 1.05119 0.85765 1.00719 1.85842 1.73119 1.18258 1.02386 1.24033 1.05853 0.88057 1.04402 1.18971 0.96268 0.98232 0.86792 1.21018 1.41728 0.91215 1.01926 0.92061 1.25000 0.95057 0.97853 0.96256 1.69951 1.41155 1.32933 1.09092 0.86544 0.78545 0.84732 0.77578 1.20026 1.21206 1.20034 1.43832 1.48924 1.04860 1.14499 1.17585 0.94245 0.81015 1.05926 1.21026 0.98619 0.92367 0.97297 1.21032 0.96332 0.95550 1.03093 1.17787 0.94166 0.78132 1.00444 1.91541 1.96071 1.31573 1.91887 1.21081 0.99366 0.92638 1.02568 1.21093 0.96131 0.95063 0.96303 1.61856 1.11007 1.51447 1.00809 1.22478 1.01604 0.96472 0.91919 1.22405 0.86522 0.99804 1.03569 0.91109 0.92109 0.90226 0.89572 0.89569 0.95421 0.95439 0.92682 0.84167 0.83451 0.83306 0.83793 0.90615 0.95616 0.90750 0.90713 0.91257 0.95892 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.22 8.94 37.16 0.33 -0.88 16 2 C 0.18 1.83 2.47 -68.86 -0.17 1.66 16 3 H 0.06 0.51 7.60 -51.93 -0.39 0.12 16 4 C 0.18 2.50 5.19 -153.79 -0.80 1.70 16 5 N -0.25 -4.39 11.86 33.04 0.39 -4.00 16 6 N -0.29 -5.58 11.60 30.73 0.36 -5.22 16 7 C 0.18 3.12 8.01 -88.10 -0.71 2.42 16 8 S -0.03 -0.48 22.00 -107.50 -2.37 -2.84 16 9 C -0.08 -1.59 5.17 37.16 0.19 -1.40 16 10 C 0.04 0.93 4.98 -27.88 -0.14 0.79 16 11 C -0.52 -14.38 9.11 -34.44 -0.31 -14.70 16 12 H 0.06 1.66 7.74 -52.49 -0.41 1.25 16 13 C 0.06 1.70 5.46 -17.82 -0.10 1.61 16 14 N -0.89 -26.19 13.29 55.43 0.74 -25.45 16 15 Si 0.90 21.42 29.54 -169.99 -5.02 16.40 16 16 H -0.27 -6.46 7.11 56.52 0.40 -6.06 16 17 H -0.29 -6.74 7.11 56.52 0.40 -6.34 16 18 H -0.27 -6.45 7.11 56.52 0.40 -6.05 16 19 N -0.43 -5.99 2.85 -57.62 -0.16 -6.16 16 20 C 0.10 1.16 5.00 -83.55 -0.42 0.74 16 21 C -0.07 -0.66 9.88 -39.42 -0.39 -1.05 16 22 C -0.14 -1.06 10.02 -39.54 -0.40 -1.46 16 23 C 0.11 0.96 7.30 -39.41 -0.29 0.68 16 24 F -0.13 -1.19 17.27 2.25 0.04 -1.15 16 25 C -0.14 -1.15 10.02 -39.54 -0.40 -1.54 16 26 C -0.07 -0.67 9.92 -39.42 -0.39 -1.06 16 27 N -0.53 -5.43 4.88 -244.57 -1.19 -6.62 16 28 C 0.02 0.16 9.21 60.07 0.55 0.72 16 29 C 0.03 0.26 9.34 60.06 0.56 0.82 16 30 H 0.07 0.43 6.40 -51.93 -0.33 0.10 16 31 H 0.06 0.47 7.82 -51.93 -0.41 0.06 16 32 H 0.08 0.82 8.14 -51.93 -0.42 0.39 16 33 H 0.09 1.84 8.14 -51.92 -0.42 1.42 16 34 H 0.09 1.85 8.14 -51.92 -0.42 1.43 16 35 H 0.03 0.73 8.14 -51.93 -0.42 0.31 16 36 H 0.03 0.72 8.14 -51.93 -0.42 0.30 16 37 H 0.26 7.30 8.31 -40.82 -0.34 6.96 16 38 H 0.14 1.10 7.73 -52.48 -0.41 0.70 16 39 H 0.15 0.77 8.06 -52.49 -0.42 0.34 16 40 H 0.15 0.95 8.06 -52.49 -0.42 0.53 16 41 H 0.14 1.46 8.06 -52.48 -0.42 1.03 16 42 H 0.08 0.46 6.30 -51.93 -0.33 0.13 16 43 H 0.03 0.16 8.14 -51.93 -0.42 -0.26 16 44 H 0.07 0.47 8.14 -51.93 -0.42 0.05 16 45 H 0.07 0.69 8.14 -51.92 -0.42 0.26 16 46 H 0.07 0.92 6.60 -51.93 -0.34 0.58 16 47 H 0.02 0.21 8.14 -51.93 -0.42 -0.21 16 LS Contribution 410.57 15.07 6.19 6.19 Total: -1.00 -32.03 410.57 -10.72 -42.75 By element: Atomic # 1 Polarization: 3.87 SS G_CDS: -6.82 Total: -2.96 kcal Atomic # 6 Polarization: -8.08 SS G_CDS: -2.86 Total: -10.94 kcal Atomic # 7 Polarization: -47.58 SS G_CDS: 0.13 Total: -47.45 kcal Atomic # 9 Polarization: -1.19 SS G_CDS: 0.04 Total: -1.15 kcal Atomic # 14 Polarization: 21.42 SS G_CDS: -5.02 Total: 16.40 kcal Atomic # 16 Polarization: -0.48 SS G_CDS: -2.37 Total: -2.84 kcal Total LS contribution 6.19 Total: 6.19 kcal Total: -32.03 -10.72 -42.75 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000044865584.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 110.046 kcal (2) G-P(sol) polarization free energy of solvation -32.029 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 78.016 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.719 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.748 kcal (6) G-S(sol) free energy of system = (1) + (5) 67.298 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.07 seconds