Wall clock time and date at job start Tue Mar 31 2020 05:07:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.09002 * 109.47026 * 2 1 4 4 C 1.50700 * 109.47115 * 239.99605 * 2 1 3 5 5 N 1.30317 * 126.35139 * 284.68399 * 4 2 1 6 6 N 1.28510 * 110.14028 * 179.88609 * 5 4 2 7 7 C 1.31303 * 109.91610 * 0.39187 * 6 5 4 8 8 S 1.76204 * 126.50328 * 179.72916 * 7 6 5 9 9 C 1.81005 * 99.99727 * 0.04487 * 8 7 6 10 10 C 1.52998 * 109.46713 * 179.97438 * 9 8 7 11 11 C 1.50698 * 109.46652 * 180.02562 * 10 9 8 12 12 H 1.07996 * 120.00858 * 359.97438 * 11 10 9 13 13 C 1.37886 * 119.99698 * 179.97438 * 11 10 9 14 14 N 1.31508 * 119.99839 * 359.97438 * 13 11 10 15 15 Si 1.86803 * 119.99927 * 179.97438 * 13 11 10 16 16 H 1.48503 * 109.46669 * 60.00266 * 15 13 11 17 17 H 1.48496 * 109.47127 * 180.02562 * 15 13 11 18 18 H 1.48502 * 109.47136 * 300.00308 * 15 13 11 19 19 N 1.36779 * 106.99699 * 359.76870 * 7 6 5 20 20 C 1.40327 * 127.17436 * 180.02562 * 19 7 6 21 21 C 1.38801 * 120.04026 * 114.70446 * 20 19 7 22 22 C 1.38119 * 119.96066 * 179.74681 * 21 20 19 23 23 C 1.38479 * 120.03844 * 0.49922 * 22 21 20 24 24 F 1.35097 * 119.96176 * 179.74911 * 23 22 21 25 25 C 1.38473 * 120.07702 * 359.77339 * 23 22 21 26 26 C 1.38119 * 120.03864 * 359.97425 * 25 23 22 27 27 N 1.46906 * 109.47009 * 119.99603 * 2 1 3 28 28 C 1.46901 * 110.99793 * 300.00244 * 27 2 1 29 29 C 1.46898 * 110.99820 * 176.04560 * 27 2 1 30 30 H 1.08994 * 109.47232 * 300.00371 * 1 2 3 31 31 H 1.09001 * 109.46911 * 60.00343 * 1 2 3 32 32 H 1.09002 * 109.47026 * 179.97438 * 1 2 3 33 33 H 1.08993 * 109.47177 * 300.00012 * 9 8 7 34 34 H 1.09001 * 109.46723 * 60.00126 * 9 8 7 35 35 H 1.08998 * 109.47109 * 299.99709 * 10 9 8 36 36 H 1.08992 * 109.47233 * 60.00435 * 10 9 8 37 37 H 0.97007 * 119.99930 * 180.02562 * 14 13 11 38 38 H 1.08003 * 120.01631 * 359.97099 * 21 20 19 39 39 H 1.08000 * 119.97736 * 180.25235 * 22 21 20 40 40 H 1.08001 * 119.97985 * 179.97438 * 25 23 22 41 41 H 1.08007 * 120.01808 * 180.02562 * 26 25 23 42 42 H 1.09002 * 109.47401 * 59.99808 * 28 27 2 43 43 H 1.09001 * 109.46874 * 299.99821 * 28 27 2 44 44 H 1.09004 * 109.46970 * 179.97438 * 28 27 2 45 45 H 1.09007 * 109.46909 * 183.95407 * 29 27 2 46 46 H 1.08998 * 109.47110 * 303.95014 * 29 27 2 47 47 H 1.09002 * 109.47061 * 63.95596 * 29 27 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0323 -0.7105 -1.2304 5 7 2.0390 -1.9982 -1.4302 6 7 2.5339 -2.2642 -2.5860 7 6 2.8815 -1.1516 -3.1904 8 16 3.6093 -1.0105 -4.7889 9 6 3.6957 -2.7586 -5.2503 10 6 4.3124 -2.8880 -6.6445 11 6 4.3838 -4.3434 -7.0289 12 1 4.0256 -5.1004 -6.3470 13 6 4.9064 -4.7087 -8.2515 14 7 5.3422 -3.7870 -9.0821 15 14 4.9956 -6.5128 -8.7277 16 1 3.6277 -7.0908 -8.7352 17 1 5.5940 -6.6385 -10.0810 18 1 5.8363 -7.2431 -7.7454 19 7 2.5722 -0.1230 -2.3436 20 6 2.7668 1.2484 -2.5687 21 6 1.6737 2.0971 -2.6745 22 6 1.8673 3.4475 -2.8908 23 6 3.1508 3.9530 -3.0125 24 9 3.3382 5.2733 -3.2291 25 6 4.2423 3.1068 -2.9129 26 6 4.0525 1.7567 -2.6914 27 7 2.0197 -0.6924 1.1995 28 6 1.5486 -0.0262 2.4211 29 6 3.4851 -0.7945 1.1871 30 1 -0.3633 0.5139 0.8899 31 1 -0.3633 0.5138 -0.8900 32 1 -0.3633 -1.0277 -0.0005 33 1 4.3120 -3.2948 -4.5288 34 1 2.6916 -3.1826 -5.2567 35 1 3.6957 -2.3519 -7.3658 36 1 5.3164 -2.4639 -6.6385 37 1 5.7095 -4.0439 -9.9424 38 1 0.6725 1.7025 -2.5840 39 1 1.0170 4.1088 -2.9691 40 1 5.2426 3.5027 -3.0085 41 1 4.9042 1.0970 -2.6133 42 1 0.4587 -0.0264 2.4379 43 1 1.9121 1.0013 2.4378 44 1 1.9251 -0.5595 3.2941 45 1 3.8164 -1.3721 2.0502 46 1 3.8069 -1.2916 0.2720 47 1 3.9192 0.2044 1.2301 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000044865584.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:07:17 Heat of formation + Delta-G solvation = 50.196092 kcal Electronic energy + Delta-G solvation = -30066.621486 eV Core-core repulsion = 25905.135835 eV Total energy + Delta-G solvation = -4161.485651 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 364.143 amu Computer time = 2.47 seconds Orbital eigenvalues (eV) -50.06185 -44.28868 -40.33025 -38.99966 -35.98692 -35.76484 -33.28879 -32.98497 -32.42369 -30.99219 -30.51390 -28.50447 -27.36537 -25.84400 -25.03430 -24.60475 -23.72056 -23.58568 -22.60448 -21.16246 -19.57540 -18.78922 -18.70159 -18.11460 -17.88400 -17.17374 -16.74557 -16.67940 -16.53294 -16.47360 -15.82969 -15.68479 -15.57924 -15.41189 -14.82878 -14.73246 -14.48161 -14.38545 -14.17112 -13.82630 -13.72348 -13.56595 -13.33236 -13.15060 -12.98589 -12.79822 -12.73288 -12.57296 -12.52331 -12.44217 -12.37413 -12.26777 -12.06077 -11.75994 -11.69669 -11.52423 -11.15974 -11.03381 -10.60168 -10.39847 -9.90427 -9.41093 -8.78369 -8.24679 -6.36663 -0.44742 -0.07157 -0.03186 0.41884 1.06144 1.34434 1.42264 1.44310 1.52691 1.57212 2.17838 2.40698 2.80190 2.99263 3.01636 3.09289 3.48663 3.60210 3.72636 3.92110 3.95530 3.96976 4.07478 4.16124 4.16546 4.26387 4.32632 4.35713 4.43617 4.59004 4.61772 4.64939 4.67223 4.74897 4.77175 4.80138 4.85035 4.86009 4.89497 5.05306 5.06098 5.24298 5.34055 5.43038 5.43896 5.71372 5.78013 5.86432 6.00450 6.10046 6.75079 7.32300 7.44609 8.86715 Molecular weight = 364.14amu Principal moments of inertia in cm(-1) A = 0.009438 B = 0.002728 C = 0.002234 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2965.958331 B =10259.606678 C =12530.408435 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.140 4.140 2 C 0.178 3.822 3 H 0.073 0.927 4 C 0.203 3.797 5 N -0.290 5.290 6 N -0.324 5.324 7 C 0.164 3.836 8 S 0.005 5.995 9 C -0.069 4.069 10 C 0.046 3.954 11 C -0.543 4.543 12 H 0.062 0.938 13 C 0.009 3.991 14 N -0.927 5.927 15 Si 0.967 3.033 16 H -0.267 1.267 17 H -0.279 1.279 18 H -0.267 1.267 19 N -0.417 5.417 20 C 0.073 3.927 21 C -0.070 4.070 22 C -0.127 4.127 23 C 0.114 3.886 24 F -0.133 7.133 25 C -0.133 4.133 26 C -0.075 4.075 27 N -0.546 5.546 28 C 0.023 3.977 29 C 0.030 3.970 30 H 0.101 0.899 31 H 0.070 0.930 32 H 0.058 0.942 33 H 0.078 0.922 34 H 0.078 0.922 35 H 0.008 0.992 36 H 0.009 0.991 37 H 0.267 0.733 38 H 0.153 0.847 39 H 0.178 0.822 40 H 0.167 0.833 41 H 0.136 0.864 42 H 0.088 0.912 43 H 0.039 0.961 44 H 0.080 0.920 45 H 0.083 0.917 46 H 0.033 0.967 47 H 0.035 0.965 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.142 20.625 21.930 31.187 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.198 4.198 2 C 0.067 3.933 3 H 0.090 0.910 4 C -0.067 4.067 5 N -0.128 5.128 6 N -0.167 5.167 7 C -0.210 4.210 8 S 0.235 5.765 9 C -0.218 4.218 10 C 0.007 3.993 11 C -0.583 4.583 12 H 0.080 0.920 13 C -0.190 4.190 14 N -0.566 5.566 15 Si 0.791 3.209 16 H -0.192 1.192 17 H -0.204 1.204 18 H -0.192 1.192 19 N -0.108 5.108 20 C -0.017 4.017 21 C -0.089 4.089 22 C -0.146 4.146 23 C 0.094 3.906 24 F -0.111 7.111 25 C -0.152 4.152 26 C -0.095 4.095 27 N -0.271 5.271 28 C -0.124 4.124 29 C -0.118 4.118 30 H 0.119 0.881 31 H 0.088 0.912 32 H 0.077 0.923 33 H 0.097 0.903 34 H 0.097 0.903 35 H 0.027 0.973 36 H 0.027 0.973 37 H 0.076 0.924 38 H 0.171 0.829 39 H 0.195 0.805 40 H 0.185 0.815 41 H 0.154 0.846 42 H 0.107 0.893 43 H 0.057 0.943 44 H 0.099 0.901 45 H 0.102 0.898 46 H 0.052 0.948 47 H 0.054 0.946 Dipole moment (debyes) X Y Z Total from point charges -8.128 19.669 21.421 30.196 hybrid contribution 0.666 -0.087 -0.346 0.755 sum -7.462 19.582 21.075 29.720 Atomic orbital electron populations 1.21921 0.90253 1.03505 1.04090 1.20060 0.97375 0.93304 0.82599 0.90951 1.25486 1.00069 0.89995 0.91117 1.73944 1.17424 1.12361 1.09057 1.74780 1.17195 1.21969 1.02785 1.27224 1.06249 0.86722 1.00822 1.85474 1.73862 1.14037 1.03132 1.23572 1.04737 0.91370 1.02088 1.18714 0.95038 0.96942 0.88596 1.21431 1.41872 0.92578 1.02406 0.92013 1.25898 0.94456 1.02547 0.96141 1.70062 1.41846 1.35155 1.09549 0.85477 0.78889 0.79102 0.77481 1.19238 1.20447 1.19239 1.43880 1.47745 1.05619 1.13602 1.17926 0.95599 0.79724 1.08475 1.21156 0.98414 0.92570 0.96779 1.21298 0.96939 0.95154 1.01190 1.17922 0.94580 0.78026 1.00032 1.91548 1.96113 1.31647 1.91843 1.21235 1.00519 0.91818 1.01595 1.21079 0.95575 0.95776 0.97075 1.61851 1.10713 1.52671 1.01902 1.22563 1.02400 0.96974 0.90415 1.22310 0.87123 1.00228 1.02130 0.88054 0.91158 0.92314 0.90280 0.90323 0.97337 0.97267 0.92401 0.82942 0.80507 0.81521 0.84609 0.89328 0.94262 0.90110 0.89785 0.94780 0.94642 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.03 8.94 71.98 0.64 -1.39 16 2 C 0.18 3.35 2.47 44.17 0.11 3.46 16 3 H 0.07 1.14 7.60 -2.39 -0.02 1.12 16 4 C 0.20 5.64 5.19 137.56 0.71 6.35 16 5 N -0.29 -10.52 11.86 -49.40 -0.59 -11.10 16 6 N -0.32 -13.04 11.60 -56.69 -0.66 -13.70 16 7 C 0.16 5.81 8.01 179.47 1.44 7.25 16 8 S 0.00 0.18 22.00 -56.49 -1.24 -1.06 16 9 C -0.07 -3.05 5.17 71.98 0.37 -2.68 16 10 C 0.05 2.44 4.98 29.85 0.15 2.59 16 11 C -0.54 -31.01 9.11 25.60 0.23 -30.78 16 12 H 0.06 3.43 7.74 -2.91 -0.02 3.41 16 13 C 0.01 0.50 5.46 84.66 0.46 0.96 16 14 N -0.93 -55.43 13.29 21.45 0.28 -55.15 16 15 Si 0.97 44.29 29.54 68.60 2.03 46.31 16 16 H -0.27 -11.87 7.11 99.48 0.71 -11.16 16 17 H -0.28 -12.38 7.11 99.48 0.71 -11.67 16 18 H -0.27 -11.86 7.11 99.48 0.71 -11.16 16 19 N -0.42 -11.62 2.85 -336.20 -0.96 -12.58 16 20 C 0.07 1.55 5.00 38.05 0.19 1.74 16 21 C -0.07 -1.07 9.88 22.38 0.22 -0.85 16 22 C -0.13 -1.48 10.02 22.30 0.22 -1.26 16 23 C 0.11 1.60 7.30 22.38 0.16 1.77 16 24 F -0.13 -2.01 17.27 44.97 0.78 -1.23 16 25 C -0.13 -1.96 10.02 22.30 0.22 -1.73 16 26 C -0.08 -1.45 9.92 22.38 0.22 -1.22 16 27 N -0.55 -10.43 4.88 -927.69 -4.52 -14.95 16 28 C 0.02 0.26 9.21 127.69 1.18 1.44 16 29 C 0.03 0.62 9.34 127.69 1.19 1.81 16 30 H 0.10 0.86 6.40 -2.39 -0.02 0.85 16 31 H 0.07 0.89 7.82 -2.39 -0.02 0.87 16 32 H 0.06 1.13 8.14 -2.39 -0.02 1.11 16 33 H 0.08 3.57 8.14 -2.40 -0.02 3.55 16 34 H 0.08 3.56 8.14 -2.39 -0.02 3.54 16 35 H 0.01 0.46 8.14 -2.39 -0.02 0.44 16 36 H 0.01 0.50 8.14 -2.39 -0.02 0.48 16 37 H 0.27 14.98 8.31 -92.70 -0.77 14.21 16 38 H 0.15 1.94 7.73 -2.91 -0.02 1.92 16 39 H 0.18 1.04 8.06 -2.91 -0.02 1.01 16 40 H 0.17 1.78 8.06 -2.91 -0.02 1.76 16 41 H 0.14 2.78 8.06 -2.91 -0.02 2.75 16 42 H 0.09 0.76 6.30 -2.39 -0.02 0.75 16 43 H 0.04 0.35 8.14 -2.39 -0.02 0.33 16 44 H 0.08 0.82 8.14 -2.38 -0.02 0.80 16 45 H 0.08 1.49 8.14 -2.38 -0.02 1.47 16 46 H 0.03 0.92 6.60 -2.39 -0.02 0.91 16 47 H 0.04 0.60 8.14 -2.39 -0.02 0.59 16 Total: -1.00 -71.98 410.57 3.83 -68.15 By element: Atomic # 1 Polarization: 6.89 SS G_CDS: 0.98 Total: 7.87 kcal Atomic # 6 Polarization: -20.29 SS G_CDS: 7.73 Total: -12.56 kcal Atomic # 7 Polarization: -101.04 SS G_CDS: -6.44 Total: -107.47 kcal Atomic # 9 Polarization: -2.01 SS G_CDS: 0.78 Total: -1.23 kcal Atomic # 14 Polarization: 44.29 SS G_CDS: 2.03 Total: 46.31 kcal Atomic # 16 Polarization: 0.18 SS G_CDS: -1.24 Total: -1.06 kcal Total: -71.98 3.83 -68.15 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000044865584.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 118.345 kcal (2) G-P(sol) polarization free energy of solvation -71.980 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 46.365 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.831 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.149 kcal (6) G-S(sol) free energy of system = (1) + (5) 50.196 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 2.47 seconds