Wall clock time and date at job start Tue Mar 31 2020 05:58:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30820 * 1 3 3 Si 1.86798 * 119.99990 * 2 1 4 4 H 1.48500 * 109.47212 * 275.40274 * 3 2 1 5 5 H 1.48498 * 109.47142 * 35.40541 * 3 2 1 6 6 H 1.48500 * 109.47434 * 155.40591 * 3 2 1 7 7 C 1.39936 * 119.99982 * 179.97438 * 2 1 3 8 8 H 1.08001 * 120.00059 * 341.81517 * 7 2 1 9 9 C 1.41438 * 120.00096 * 161.81668 * 7 2 1 10 10 C 1.40784 * 120.17565 * 329.95894 * 9 7 2 11 11 C 1.37702 * 120.01743 * 180.29751 * 10 9 7 12 12 C 1.38389 * 120.40598 * 359.95808 * 11 10 9 13 13 C 1.39815 * 120.36566 * 0.04310 * 12 11 10 14 14 C 1.48023 * 120.01934 * 180.02562 * 13 12 11 15 15 O 1.35242 * 120.00282 * 179.97438 * 14 13 12 16 16 N 1.29972 * 120.00074 * 359.97438 * 14 13 12 17 17 S 1.65600 * 120.00078 * 179.97438 * 16 14 13 18 18 O 1.42096 * 106.40522 * 293.54030 * 17 16 14 19 19 O 1.42100 * 106.40258 * 66.46109 * 17 16 14 20 20 C 1.76204 * 107.21766 * 180.02562 * 17 16 14 21 21 C 1.38267 * 119.98904 * 269.72240 * 20 17 16 22 22 C 1.38222 * 120.02260 * 179.76717 * 21 20 17 23 23 C 1.38238 * 120.01183 * 0.50993 * 22 21 20 24 24 C 1.38328 * 119.99000 * 359.74805 * 23 22 21 25 25 Cl 1.73598 * 120.01541 * 180.02562 * 24 23 22 26 26 C 1.38187 * 119.99505 * 90.00033 * 20 17 16 27 27 C 1.38946 * 119.96288 * 359.97438 * 13 12 11 28 28 H 0.96999 * 120.00402 * 0.02562 * 1 2 3 29 29 H 1.07991 * 119.99262 * 0.25287 * 10 9 7 30 30 H 1.08003 * 119.79294 * 179.97438 * 11 10 9 31 31 H 1.08003 * 119.81809 * 180.02562 * 12 11 10 32 32 H 0.96692 * 114.00409 * 179.97438 * 15 14 13 33 33 H 1.08002 * 119.98820 * 0.02562 * 21 20 17 34 34 H 1.08002 * 119.99000 * 180.25960 * 22 21 20 35 35 H 1.08000 * 120.00457 * 179.76937 * 23 22 21 36 36 H 1.07997 * 120.00919 * 359.96078 * 26 20 17 37 37 H 1.07999 * 120.19903 * 180.02562 * 27 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3082 0.0000 0.0000 3 14 2.2422 1.6177 0.0000 4 1 2.3755 2.1123 -1.3938 5 1 1.5014 2.6170 0.8111 6 1 3.5922 1.4100 0.5827 7 6 2.0079 -1.2119 0.0005 8 1 1.5083 -2.1237 0.2928 9 6 3.3693 -1.2427 -0.3817 10 6 3.8630 -0.3130 -1.3166 11 6 5.1876 -0.3499 -1.6910 12 6 6.0415 -1.2967 -1.1529 13 6 5.5687 -2.2278 -0.2232 14 6 6.4889 -3.2368 0.3479 15 8 6.0314 -4.1369 1.2476 16 7 7.7367 -3.2577 -0.0152 17 16 8.7663 -4.3862 0.6242 18 8 8.8915 -4.0781 2.0057 19 8 8.3240 -5.6493 0.1466 20 6 10.3524 -4.1103 -0.0920 21 6 10.7052 -4.7591 -1.2610 22 6 11.9474 -4.5395 -1.8260 23 6 12.8417 -3.6791 -1.2170 24 6 12.4913 -3.0338 -0.0447 25 17 13.6136 -1.9526 0.7203 26 6 11.2456 -3.2500 0.5177 27 6 4.2349 -2.2047 0.1652 28 1 -0.4851 0.8400 -0.0004 29 1 3.2026 0.4287 -1.7408 30 1 5.5625 0.3648 -2.4088 31 1 7.0788 -1.3167 -1.4530 32 1 6.7048 -4.7548 1.5632 33 1 10.0083 -5.4345 -1.7349 34 1 12.2208 -5.0433 -2.7413 35 1 13.8136 -3.5104 -1.6566 36 1 10.9714 -2.7462 1.4327 37 1 3.8657 -2.9218 0.8834 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000048496551.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:58:34 Heat of formation + Delta-G solvation = -65.949494 kcal Electronic energy + Delta-G solvation = -26608.411310 eV Core-core repulsion = 22468.547981 eV Total energy + Delta-G solvation = -4139.863329 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 365.032 amu Computer time = 0.80 seconds Orbital eigenvalues (eV) -41.39813 -40.41554 -39.44987 -38.62947 -37.61618 -37.32104 -35.80287 -35.01445 -32.62115 -32.36519 -32.00207 -31.98260 -27.15449 -25.92067 -24.70621 -24.00413 -22.86065 -22.32730 -21.11465 -19.85067 -19.48456 -19.25681 -17.91230 -17.58262 -17.52348 -16.81643 -16.56395 -16.49520 -16.32315 -16.02933 -15.98375 -15.62447 -14.95898 -14.82926 -14.60846 -14.52308 -13.98899 -13.90813 -13.65352 -13.58063 -13.47718 -13.42074 -12.86711 -12.84726 -12.78238 -12.76454 -12.45686 -12.38772 -12.00476 -11.85174 -11.70679 -11.60562 -11.42286 -11.05941 -10.63375 -10.04246 -9.70759 -9.61460 -8.88406 -6.52153 -1.05717 -0.58342 -0.50327 -0.08240 0.73876 0.90822 1.10447 1.31221 1.45302 1.54057 1.55875 1.77815 1.86392 2.13432 2.32394 2.57995 3.15696 3.40236 3.58159 3.76706 3.80517 3.83582 4.11037 4.20614 4.22009 4.28605 4.49656 4.54468 4.55369 4.71790 4.87758 4.88305 4.91947 5.00509 5.11895 5.34786 5.46778 5.61022 5.71564 5.83783 5.96719 6.09872 6.31132 6.62178 6.76573 8.19767 Molecular weight = 365.03amu Principal moments of inertia in cm(-1) A = 0.015694 B = 0.002407 C = 0.002249 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1783.733562 B =11627.895815 C =12446.423422 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.846 5.846 2 C 0.047 3.953 3 Si 0.958 3.042 4 H -0.247 1.247 5 H -0.281 1.281 6 H -0.248 1.248 7 C -0.482 4.482 8 H 0.060 0.940 9 C 0.061 3.939 10 C -0.204 4.204 11 C -0.088 4.088 12 C -0.141 4.141 13 C -0.063 4.063 14 C 0.553 3.447 15 O -0.487 6.487 16 N -0.989 5.989 17 S 2.618 3.382 18 O -0.996 6.996 19 O -0.990 6.990 20 C -0.629 4.629 21 C -0.024 4.024 22 C -0.114 4.114 23 C -0.045 4.045 24 C -0.066 4.066 25 Cl -0.055 7.055 26 C -0.027 4.027 27 C -0.156 4.156 28 H 0.295 0.705 29 H 0.111 0.889 30 H 0.150 0.850 31 H 0.147 0.853 32 H 0.397 0.603 33 H 0.157 0.843 34 H 0.185 0.815 35 H 0.177 0.823 36 H 0.145 0.855 37 H 0.115 0.885 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 24.997 -3.841 -4.814 25.745 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.472 5.472 2 C -0.168 4.168 3 Si 0.780 3.220 4 H -0.172 1.172 5 H -0.207 1.207 6 H -0.171 1.171 7 C -0.511 4.511 8 H 0.078 0.922 9 C 0.058 3.942 10 C -0.224 4.224 11 C -0.106 4.106 12 C -0.162 4.162 13 C -0.067 4.067 14 C 0.341 3.659 15 O -0.280 6.280 16 N -0.856 5.856 17 S 2.717 3.283 18 O -0.985 6.985 19 O -0.979 6.979 20 C -0.721 4.721 21 C -0.044 4.044 22 C -0.133 4.133 23 C -0.063 4.063 24 C -0.093 4.093 25 Cl -0.026 7.026 26 C -0.047 4.047 27 C -0.177 4.177 28 H 0.105 0.895 29 H 0.129 0.871 30 H 0.168 0.832 31 H 0.165 0.835 32 H 0.254 0.746 33 H 0.175 0.825 34 H 0.203 0.797 35 H 0.194 0.806 36 H 0.162 0.838 37 H 0.134 0.866 Dipole moment (debyes) X Y Z Total from point charges 24.528 -3.817 -4.506 25.229 hybrid contribution 0.304 -0.086 0.856 0.913 sum 24.833 -3.903 -3.650 25.401 Atomic orbital electron populations 1.69712 1.09297 1.31627 1.36562 1.26834 0.95336 1.04236 0.90365 0.85601 0.79876 0.76420 0.80094 1.17189 1.20724 1.17103 1.19434 0.94097 0.95872 1.41676 0.92226 1.17742 0.92701 0.92390 0.91342 1.21560 0.97146 1.02869 1.00801 1.21052 0.92272 0.98106 0.99188 1.20991 1.00803 0.95749 0.98608 1.17905 0.90996 0.95938 1.01846 1.22379 0.86976 0.81040 0.75514 1.85200 1.44265 1.43176 1.55369 1.74087 1.12260 1.49270 1.49987 1.03736 0.77314 0.73597 0.73608 1.93622 1.87582 1.84406 1.32869 1.93626 1.80934 1.42119 1.81177 1.29568 1.19467 1.12323 1.10784 1.21416 0.98253 0.94007 0.90702 1.21744 0.91959 0.98012 1.01549 1.21877 1.01418 0.91779 0.91246 1.21105 0.92075 0.98694 0.97451 1.98395 1.60293 1.62786 1.81128 1.20877 0.91847 0.93432 0.98555 1.21437 0.91693 1.02558 1.02015 0.89476 0.87109 0.83245 0.83507 0.74585 0.82534 0.79732 0.80561 0.83757 0.86647 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.85 -44.30 13.93 21.82 0.30 -44.00 16 2 C 0.05 2.39 5.40 85.25 0.46 2.85 16 3 Si 0.96 39.04 24.52 68.60 1.68 40.72 16 4 H -0.25 -9.18 6.71 99.48 0.67 -8.51 16 5 H -0.28 -11.01 7.11 99.48 0.71 -10.30 16 6 H -0.25 -10.18 6.87 99.48 0.68 -9.49 16 7 C -0.48 -25.37 9.57 23.47 0.22 -25.14 16 8 H 0.06 3.41 8.06 -2.91 -0.02 3.39 16 9 C 0.06 2.85 5.10 -21.32 -0.11 2.74 16 10 C -0.20 -8.46 7.18 22.77 0.16 -8.29 16 11 C -0.09 -3.05 10.01 22.18 0.22 -2.83 16 12 C -0.14 -4.88 9.58 22.69 0.22 -4.67 16 13 C -0.06 -2.43 5.87 -20.13 -0.12 -2.55 16 14 C 0.55 19.36 7.89 87.57 0.69 20.05 16 15 O -0.49 -16.29 12.80 -85.07 -1.09 -17.38 16 16 N -0.99 -31.08 10.01 -166.93 -1.67 -32.75 16 17 S 2.62 75.67 4.25 -56.49 -0.24 75.43 16 18 O -1.00 -32.63 16.60 -127.13 -2.11 -34.74 16 19 O -0.99 -31.02 16.60 -127.11 -2.11 -33.13 16 20 C -0.63 -14.78 5.97 22.26 0.13 -14.64 16 21 C -0.02 -0.44 9.52 22.27 0.21 -0.23 16 22 C -0.11 -1.32 10.05 22.27 0.22 -1.10 16 23 C -0.04 -0.54 9.83 22.29 0.22 -0.32 16 24 C -0.07 -1.17 6.32 22.32 0.14 -1.02 16 25 Cl -0.05 -0.91 28.96 -2.72 -0.08 -0.99 16 26 C -0.03 -0.60 9.31 22.29 0.21 -0.39 16 27 C -0.16 -6.76 9.36 22.99 0.22 -6.55 16 28 H 0.29 13.83 8.30 -92.71 -0.77 13.06 16 29 H 0.11 4.50 4.73 -2.92 -0.01 4.49 16 30 H 0.15 3.95 8.06 -2.91 -0.02 3.92 16 31 H 0.15 4.36 7.54 -2.91 -0.02 4.34 16 32 H 0.40 11.35 5.71 -78.40 -0.45 10.91 16 33 H 0.16 2.53 7.61 -2.91 -0.02 2.51 16 34 H 0.19 0.67 8.06 -2.91 -0.02 0.65 16 35 H 0.18 0.93 8.06 -2.91 -0.02 0.91 16 36 H 0.14 3.31 7.62 -2.91 -0.02 3.28 16 37 H 0.12 4.96 7.60 -2.91 -0.02 4.94 16 Total: -1.00 -63.26 350.62 -1.56 -64.83 By element: Atomic # 1 Polarization: 23.45 SS G_CDS: 0.64 Total: 24.09 kcal Atomic # 6 Polarization: -45.19 SS G_CDS: 3.10 Total: -42.09 kcal Atomic # 7 Polarization: -75.38 SS G_CDS: -1.37 Total: -76.75 kcal Atomic # 8 Polarization: -79.94 SS G_CDS: -5.31 Total: -85.25 kcal Atomic # 14 Polarization: 39.04 SS G_CDS: 1.68 Total: 40.72 kcal Atomic # 16 Polarization: 75.67 SS G_CDS: -0.24 Total: 75.43 kcal Atomic # 17 Polarization: -0.91 SS G_CDS: -0.08 Total: -0.99 kcal Total: -63.26 -1.56 -64.83 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000048496551.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -1.121 kcal (2) G-P(sol) polarization free energy of solvation -63.264 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -64.385 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.565 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.829 kcal (6) G-S(sol) free energy of system = (1) + (5) -65.949 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.81 seconds