Wall clock time and date at job start Tue Mar 31 2020 07:35:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46496 * 1 3 3 C 1.46498 * 120.00120 * 2 1 4 4 C 1.50700 * 109.46679 * 275.56843 * 3 2 1 5 5 H 1.08000 * 120.00505 * 4.71379 * 4 3 2 6 6 C 1.37880 * 120.00062 * 184.71743 * 4 3 2 7 7 N 1.31517 * 120.00066 * 359.97438 * 6 4 3 8 8 Si 1.86796 * 120.00319 * 180.02562 * 6 4 3 9 9 H 1.48505 * 109.47266 * 59.99582 * 8 6 4 10 10 H 1.48497 * 109.47191 * 179.97438 * 8 6 4 11 11 H 1.48503 * 109.46961 * 299.99724 * 8 6 4 12 12 S 1.65599 * 119.99980 * 179.97438 * 2 1 3 13 13 O 1.42098 * 106.40393 * 159.57585 * 12 2 1 14 14 O 1.42107 * 106.40115 * 26.65342 * 12 2 1 15 15 N 1.65602 * 107.22085 * 273.11174 * 12 2 1 16 16 C 1.46502 * 119.99592 * 62.77662 * 15 12 2 17 17 C 1.53001 * 109.47239 * 164.44612 * 16 15 12 18 18 C 1.50692 * 109.47433 * 179.97438 * 17 16 15 19 19 C 1.38250 * 120.00094 * 264.95583 * 18 17 16 20 20 C 1.38227 * 120.03944 * 180.02562 * 19 18 17 21 21 C 1.38247 * 120.03855 * 0.04214 * 20 19 18 22 22 C 1.38306 * 119.99771 * 359.97438 * 21 20 19 23 23 Cl 1.73603 * 120.01645 * 179.97438 * 22 21 20 24 24 C 1.38309 * 120.00024 * 84.99865 * 18 17 16 25 25 Cl 1.73599 * 120.02021 * 0.25386 * 24 18 17 26 26 H 1.08999 * 109.47328 * 270.00119 * 1 2 3 27 27 H 1.08995 * 109.47264 * 30.00138 * 1 2 3 28 28 H 1.08999 * 109.47168 * 150.00651 * 1 2 3 29 29 H 1.08994 * 109.47123 * 35.56429 * 3 2 1 30 30 H 1.08996 * 109.47184 * 155.57026 * 3 2 1 31 31 H 0.96995 * 120.00204 * 179.97438 * 7 6 4 32 32 H 0.96993 * 120.00576 * 242.77131 * 15 12 2 33 33 H 1.09003 * 109.47564 * 44.44235 * 16 15 12 34 34 H 1.09006 * 109.47224 * 284.44160 * 16 15 12 35 35 H 1.09003 * 109.47151 * 59.99370 * 17 16 15 36 36 H 1.09006 * 109.46643 * 299.99903 * 17 16 15 37 37 H 1.07995 * 119.97795 * 0.02562 * 19 18 17 38 38 H 1.07993 * 119.97795 * 180.02562 * 20 19 18 39 39 H 1.07999 * 119.99906 * 180.02562 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1975 1.2687 0.0000 4 6 2.3292 1.7726 -1.4142 5 1 1.8446 1.2454 -2.2227 6 6 3.0684 2.9066 -1.6759 7 7 3.6582 3.5489 -0.6914 8 14 3.2312 3.5317 -3.4287 9 1 1.8844 3.8488 -3.9682 10 1 4.0701 4.7568 -3.4414 11 1 3.8678 2.4864 -4.2698 12 16 2.2930 -1.4341 0.0006 13 8 3.5999 -1.1432 -0.4752 14 8 1.4384 -2.3911 -0.6105 15 7 2.4637 -1.9009 1.5803 16 6 1.2783 -2.1952 2.3893 17 6 1.6962 -2.9590 3.6475 18 6 0.4770 -3.2611 4.4800 19 6 0.1187 -2.4155 5.5133 20 6 -0.9992 -2.6921 6.2778 21 6 -1.7598 -3.8152 6.0105 22 6 -1.4025 -4.6625 4.9774 23 17 -2.3568 -6.0733 4.6417 24 6 -0.2830 -4.3849 4.2109 25 17 0.1709 -5.4512 2.9184 26 1 -0.3634 0.0000 1.0276 27 1 -0.3633 0.8899 -0.5138 28 1 -0.3633 -0.8900 -0.5137 29 1 1.6552 2.0013 0.5977 30 1 3.1894 1.1155 0.4250 31 1 4.1786 4.3465 -0.8755 32 1 3.3485 -1.9796 1.9699 33 1 0.5840 -2.8030 1.8091 34 1 0.7928 -1.2621 2.6753 35 1 2.3905 -2.3511 4.2277 36 1 2.1817 -3.8921 3.3615 37 1 0.7125 -1.5382 5.7233 38 1 -1.2785 -2.0307 7.0845 39 1 -2.6333 -4.0306 6.6080 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000048671358.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:35:02 Heat of formation + Delta-G solvation = -70.191723 kcal Electronic energy + Delta-G solvation = -26008.281201 eV Core-core repulsion = 21936.208249 eV Total energy + Delta-G solvation = -4072.072952 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 366.036 amu Computer time = 3.17 seconds Orbital eigenvalues (eV) -40.05158 -37.05059 -36.79018 -36.61559 -35.90370 -35.46630 -35.13880 -32.63202 -32.42617 -31.01097 -28.32843 -27.76888 -25.07279 -23.84541 -23.21979 -22.29183 -21.63372 -18.97525 -17.64418 -17.19314 -16.74514 -16.57761 -16.41613 -16.16846 -15.80370 -15.03961 -14.66997 -14.50286 -14.36610 -14.19274 -13.83969 -13.36245 -13.26485 -12.66383 -12.44481 -12.32312 -12.25058 -12.14928 -12.11246 -11.77541 -11.60496 -11.58233 -11.45712 -11.34876 -11.15972 -11.14547 -11.04657 -10.99925 -10.70586 -10.48657 -10.04070 -9.77997 -9.36228 -9.19200 -9.10171 -8.43909 -8.06894 -6.06414 -4.10507 0.56018 0.62048 1.24587 1.51119 1.89465 3.00672 3.33944 3.37464 3.41990 3.50364 4.06934 4.21319 4.35438 4.45046 4.62224 4.70253 4.79432 4.80027 4.95745 5.09554 5.14850 5.28874 5.40514 5.48740 5.57515 5.59543 5.69901 5.79598 5.94969 5.98924 6.04192 6.16978 6.30518 6.55825 7.08195 7.26112 7.41220 7.62686 7.91187 8.20699 8.91782 9.54829 11.02233 Molecular weight = 366.04amu Principal moments of inertia in cm(-1) A = 0.019545 B = 0.002376 C = 0.002285 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1432.247990 B =11783.529108 C =12248.642833 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.093 3.907 2 N -0.995 5.995 3 C 0.257 3.743 4 C -0.532 4.532 5 H 0.060 0.940 6 C 0.063 3.937 7 N -0.896 5.896 8 Si 0.897 3.103 9 H -0.276 1.276 10 H -0.286 1.286 11 H -0.274 1.274 12 S 2.781 3.219 13 O -0.963 6.963 14 O -0.996 6.996 15 N -1.134 6.134 16 C 0.127 3.873 17 C -0.094 4.094 18 C -0.059 4.059 19 C -0.097 4.097 20 C -0.101 4.101 21 C -0.104 4.104 22 C -0.030 4.030 23 Cl -0.051 7.051 24 C -0.031 4.031 25 Cl -0.039 7.039 26 H 0.037 0.963 27 H 0.078 0.922 28 H 0.066 0.934 29 H 0.032 0.968 30 H 0.042 0.958 31 H 0.264 0.736 32 H 0.413 0.587 33 H 0.078 0.922 34 H 0.067 0.933 35 H 0.090 0.910 36 H 0.090 0.910 37 H 0.142 0.858 38 H 0.140 0.860 39 H 0.141 0.859 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.325 -15.066 18.304 25.857 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.053 4.053 2 N -0.838 5.838 3 C 0.135 3.865 4 C -0.571 4.571 5 H 0.078 0.922 6 C -0.140 4.140 7 N -0.534 5.534 8 Si 0.724 3.276 9 H -0.202 1.202 10 H -0.212 1.212 11 H -0.200 1.200 12 S 2.788 3.212 13 O -0.947 6.947 14 O -0.979 6.979 15 N -0.893 5.893 16 C 0.000 4.000 17 C -0.132 4.132 18 C -0.061 4.061 19 C -0.115 4.115 20 C -0.119 4.119 21 C -0.123 4.123 22 C -0.057 4.057 23 Cl -0.022 7.022 24 C -0.059 4.059 25 Cl -0.010 7.010 26 H 0.056 0.944 27 H 0.097 0.903 28 H 0.084 0.916 29 H 0.050 0.950 30 H 0.060 0.940 31 H 0.074 0.926 32 H 0.245 0.755 33 H 0.096 0.904 34 H 0.085 0.915 35 H 0.109 0.891 36 H 0.108 0.892 37 H 0.160 0.840 38 H 0.157 0.843 39 H 0.159 0.841 Dipole moment (debyes) X Y Z Total from point charges -10.133 -15.580 17.334 25.414 hybrid contribution 0.257 0.433 -0.487 0.701 sum -9.876 -15.147 16.846 24.714 Atomic orbital electron populations 1.21380 0.80296 1.03581 1.00088 1.57594 1.14221 1.23305 1.88693 1.19058 0.91194 0.78622 0.97616 1.21468 1.31851 1.10333 0.93448 0.92197 1.24932 0.95005 0.96516 0.97500 1.69904 1.33180 1.18973 1.31387 0.86575 0.78141 0.78166 0.84679 1.20164 1.21151 1.19982 1.01983 0.73418 0.72957 0.72815 1.93645 1.38668 1.84589 1.77782 1.93532 1.68953 1.61063 1.74358 1.56256 1.13729 1.85907 1.33418 1.21121 0.87685 0.99399 0.91791 1.20904 0.94475 1.02559 0.95271 1.19652 0.96733 0.92880 0.96834 1.21233 0.97124 0.99098 0.94085 1.21237 0.94482 0.96499 0.99673 1.21066 1.00819 0.94103 0.96293 1.20791 0.94139 0.92390 0.98419 1.98399 1.70551 1.38483 1.94734 1.20762 0.96326 0.94867 0.93921 1.98421 1.91669 1.63707 1.47156 0.94405 0.90345 0.91581 0.95022 0.93957 0.92624 0.75450 0.90407 0.91513 0.89130 0.89150 0.84046 0.84250 0.84093 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.09 1.58 10.69 59.84 0.64 2.22 16 2 N -1.00 -20.40 3.23 -123.06 -0.40 -20.80 16 3 C 0.26 6.38 5.10 -5.19 -0.03 6.36 16 4 C -0.53 -14.92 9.38 -34.44 -0.32 -15.24 16 5 H 0.06 1.68 7.81 -52.49 -0.41 1.27 16 6 C 0.06 1.78 5.46 -17.82 -0.10 1.69 16 7 N -0.90 -26.08 13.29 55.43 0.74 -25.34 16 8 Si 0.90 21.86 29.54 -169.99 -5.02 16.83 16 9 H -0.28 -6.53 7.11 56.52 0.40 -6.13 16 10 H -0.29 -6.81 7.11 56.52 0.40 -6.41 16 11 H -0.27 -6.73 7.11 56.52 0.40 -6.33 16 12 S 2.78 54.84 6.09 -107.50 -0.65 54.19 16 13 O -0.96 -23.02 16.99 -57.17 -0.97 -23.99 16 14 O -1.00 -20.90 16.34 -57.17 -0.93 -21.84 16 15 N -1.13 -16.07 6.05 -10.61 -0.06 -16.13 16 16 C 0.13 1.50 6.24 -4.04 -0.03 1.47 16 17 C -0.09 -0.85 5.00 -27.89 -0.14 -0.99 16 18 C -0.06 -0.52 5.14 -104.60 -0.54 -1.06 16 19 C -0.10 -0.68 9.68 -39.58 -0.38 -1.06 16 20 C -0.10 -0.61 10.04 -39.58 -0.40 -1.00 16 21 C -0.10 -0.72 9.83 -39.55 -0.39 -1.11 16 22 C -0.03 -0.27 6.32 -39.46 -0.25 -0.52 16 23 Cl -0.05 -0.46 27.96 -51.86 -1.45 -1.91 16 24 C -0.03 -0.31 6.32 -39.46 -0.25 -0.56 16 25 Cl -0.04 -0.43 26.19 -51.86 -1.36 -1.79 16 26 H 0.04 0.52 8.05 -51.93 -0.42 0.10 16 27 H 0.08 1.35 8.07 -51.93 -0.42 0.93 16 28 H 0.07 1.07 7.05 -51.93 -0.37 0.70 16 29 H 0.03 0.79 8.11 -51.93 -0.42 0.37 16 30 H 0.04 1.12 7.50 -51.93 -0.39 0.73 16 31 H 0.26 7.28 8.31 -40.82 -0.34 6.94 16 32 H 0.41 4.95 8.66 -34.47 -0.30 4.65 16 33 H 0.08 1.00 7.57 -51.93 -0.39 0.61 16 34 H 0.07 0.73 8.05 -51.93 -0.42 0.31 16 35 H 0.09 0.65 8.05 -51.93 -0.42 0.24 16 36 H 0.09 0.83 7.12 -51.93 -0.37 0.46 16 37 H 0.14 0.73 8.06 -52.49 -0.42 0.30 16 38 H 0.14 0.48 8.06 -52.49 -0.42 0.06 16 39 H 0.14 0.69 8.06 -52.49 -0.42 0.27 16 LS Contribution 374.72 15.07 5.65 5.65 Total: -1.00 -34.48 374.72 -11.37 -45.85 By element: Atomic # 1 Polarization: 3.80 SS G_CDS: -4.72 Total: -0.92 kcal Atomic # 6 Polarization: -7.63 SS G_CDS: -2.18 Total: -9.80 kcal Atomic # 7 Polarization: -62.54 SS G_CDS: 0.28 Total: -62.27 kcal Atomic # 8 Polarization: -43.92 SS G_CDS: -1.91 Total: -45.83 kcal Atomic # 14 Polarization: 21.86 SS G_CDS: -5.02 Total: 16.83 kcal Atomic # 16 Polarization: 54.84 SS G_CDS: -0.65 Total: 54.19 kcal Atomic # 17 Polarization: -0.89 SS G_CDS: -2.81 Total: -3.70 kcal Total LS contribution 5.65 Total: 5.65 kcal Total: -34.48 -11.37 -45.85 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000048671358.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -24.340 kcal (2) G-P(sol) polarization free energy of solvation -34.483 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -58.823 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.369 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.852 kcal (6) G-S(sol) free energy of system = (1) + (5) -70.192 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 3.17 seconds