Wall clock time and date at job start Tue Mar 31 2020 07:40:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31509 * 1 3 3 Si 1.86791 * 120.00387 * 2 1 4 4 H 1.48501 * 109.47462 * 179.97438 * 3 2 1 5 5 H 1.48499 * 109.47187 * 300.00088 * 3 2 1 6 6 H 1.48502 * 109.46936 * 59.99870 * 3 2 1 7 7 C 1.37885 * 119.99747 * 180.02562 * 2 1 3 8 8 H 1.08001 * 119.99615 * 180.02562 * 7 2 1 9 9 C 1.50705 * 120.00065 * 359.97438 * 7 2 1 10 10 N 1.46896 * 109.46788 * 174.90182 * 9 7 2 11 11 C 1.46845 * 111.00402 * 306.12532 * 10 9 7 12 12 C 1.53034 * 109.52524 * 185.84115 * 11 10 9 13 13 C 1.53121 * 109.27668 * 300.82278 * 12 11 10 14 14 C 1.50705 * 109.52003 * 177.55626 * 13 12 11 15 15 O 1.21286 * 120.00041 * 240.31664 * 14 13 12 16 16 N 1.34780 * 119.99714 * 60.31958 * 14 13 12 17 17 C 1.39955 * 119.99864 * 185.09935 * 16 14 13 18 18 C 1.38869 * 120.06202 * 213.83504 * 17 16 14 19 19 C 1.38103 * 119.94001 * 179.77105 * 18 17 16 20 20 C 1.38362 * 120.05972 * 0.50298 * 19 18 17 21 21 Br 1.89108 * 119.93738 * 179.72500 * 20 19 18 22 22 C 1.38350 * 120.12167 * 359.74532 * 20 19 18 23 23 C 1.38111 * 120.06107 * 0.02562 * 22 20 19 24 24 C 1.53119 * 109.15998 * 57.65621 * 13 12 11 25 25 C 1.46847 * 111.00083 * 70.33975 * 10 9 7 26 26 H 0.96996 * 120.00178 * 0.02562 * 1 2 3 27 27 H 1.08996 * 109.47256 * 294.90668 * 9 7 2 28 28 H 1.08997 * 109.46650 * 54.90322 * 9 7 2 29 29 H 1.08999 * 109.46487 * 305.86373 * 11 10 9 30 30 H 1.09000 * 109.45811 * 65.82345 * 11 10 9 31 31 H 1.09003 * 109.50379 * 180.87966 * 12 11 10 32 32 H 1.09001 * 109.50373 * 60.76414 * 12 11 10 33 33 H 1.08996 * 109.57832 * 297.71688 * 13 12 11 34 34 H 0.97001 * 119.99984 * 5.10322 * 16 14 13 35 35 H 1.08005 * 120.02879 * 0.02562 * 18 17 16 36 36 H 1.08006 * 119.96890 * 180.22829 * 19 18 17 37 37 H 1.08004 * 119.97079 * 179.97438 * 22 20 19 38 38 H 1.08000 * 120.03103 * 179.97438 * 23 22 20 39 39 H 1.09001 * 109.50044 * 182.40225 * 24 13 12 40 40 H 1.09000 * 109.53429 * 62.30816 * 24 13 12 41 41 H 1.09000 * 109.46253 * 294.17392 * 25 10 9 42 42 H 1.09008 * 109.45773 * 54.15293 * 25 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6176 0.0000 4 1 3.7092 1.3462 0.0006 5 1 1.8905 2.3963 -1.2125 6 1 1.8904 2.3963 1.2125 7 6 2.0045 -1.1942 -0.0005 8 1 3.0845 -1.1941 -0.0001 9 6 1.2509 -2.4993 -0.0005 10 7 2.2007 -3.6130 -0.1242 11 6 3.0687 -3.4369 -1.2955 12 6 3.9426 -4.6802 -1.4761 13 6 4.7887 -4.8906 -0.2174 14 6 5.6072 -6.1473 -0.3651 15 8 5.4647 -7.0598 0.4210 16 7 6.4977 -6.2571 -1.3709 17 6 7.1803 -7.4621 -1.5726 18 6 8.4875 -7.4512 -2.0412 19 6 9.1603 -8.6416 -2.2349 20 6 8.5296 -9.8448 -1.9725 21 35 9.4515 -11.4731 -2.2464 22 6 7.2255 -9.8589 -1.5105 23 6 6.5496 -8.6712 -1.3105 24 6 3.8623 -5.0229 0.9946 25 6 2.9909 -3.7696 1.1036 26 1 -0.4850 0.8400 -0.0004 27 1 0.6948 -2.5977 0.9317 28 1 0.5572 -2.5182 -0.8411 29 1 2.4546 -3.2923 -2.1843 30 1 3.7049 -2.5641 -1.1480 31 1 4.5978 -4.5426 -2.3363 32 1 3.3073 -5.5511 -1.6374 33 1 5.4527 -4.0377 -0.0769 34 1 6.6655 -5.5010 -1.9548 35 1 8.9790 -6.5123 -2.2500 36 1 10.1783 -8.6334 -2.5958 37 1 6.7354 -10.7995 -1.3069 38 1 5.5315 -8.6828 -0.9503 39 1 4.4602 -5.1302 1.8996 40 1 3.2258 -5.8994 0.8729 41 1 3.6274 -2.8953 1.2398 42 1 2.3200 -3.8671 1.9572 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Br: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000049750661.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:40:50 Heat of formation + Delta-G solvation = -12.457823 kcal Electronic energy + Delta-G solvation = -24115.231535 eV Core-core repulsion = 20526.747500 eV Total energy + Delta-G solvation = -3588.484035 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 366.068 amu Computer time = 4.69 seconds Orbital eigenvalues (eV) -40.94841 -39.15936 -37.77113 -35.17155 -33.82839 -32.17366 -31.65574 -31.41279 -30.35188 -28.82590 -27.01396 -24.76028 -23.47817 -22.74619 -22.53726 -21.56614 -20.38131 -19.28846 -18.17022 -17.18159 -16.49169 -16.30231 -15.69702 -15.31238 -14.78531 -14.72149 -14.30429 -14.24581 -14.05799 -13.80035 -13.58883 -13.26442 -12.93179 -12.78647 -12.20920 -12.08689 -11.89536 -11.85560 -11.41389 -11.16613 -11.05131 -10.84775 -10.71554 -10.59126 -10.57497 -10.46431 -10.24750 -10.00831 -9.90642 -9.76568 -9.52310 -9.35063 -8.49388 -8.39355 -7.23137 -6.08296 -4.18002 0.68856 0.96927 1.33376 2.40746 2.77699 3.21193 3.29859 3.31587 3.33724 4.34433 4.36883 4.53252 4.55680 4.82858 4.91398 4.95247 5.01556 5.09678 5.17523 5.22446 5.41219 5.56082 5.62151 5.66105 5.86816 5.89126 5.91903 5.96781 5.98986 6.07606 6.19873 6.23140 6.43610 6.55953 6.56892 6.66697 6.78721 7.09280 7.23511 7.47580 7.84421 7.91126 7.99117 8.22827 8.25934 8.92621 9.49072 10.96625 Molecular weight = 366.07amu Principal moments of inertia in cm(-1) A = 0.034846 B = 0.001646 C = 0.001610 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 803.343612 B =17007.312041 C =17386.770057 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.889 5.889 2 C 0.064 3.936 3 Si 0.889 3.111 4 H -0.274 1.274 5 H -0.283 1.283 6 H -0.283 1.283 7 C -0.550 4.550 8 H 0.057 0.943 9 C 0.186 3.814 10 N -0.542 5.542 11 C 0.067 3.933 12 C -0.107 4.107 13 C -0.103 4.103 14 C 0.522 3.478 15 O -0.516 6.516 16 N -0.679 5.679 17 C 0.172 3.828 18 C -0.145 4.145 19 C -0.070 4.070 20 C -0.112 4.112 21 Br -0.057 7.057 22 C -0.069 4.069 23 C -0.117 4.117 24 C -0.094 4.094 25 C 0.062 3.938 26 H 0.262 0.738 27 H 0.027 0.973 28 H 0.036 0.964 29 H 0.071 0.929 30 H 0.043 0.957 31 H 0.060 0.940 32 H 0.071 0.929 33 H 0.097 0.903 34 H 0.414 0.586 35 H 0.135 0.865 36 H 0.135 0.865 37 H 0.135 0.865 38 H 0.144 0.856 39 H 0.064 0.936 40 H 0.073 0.927 41 H 0.036 0.964 42 H 0.069 0.931 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 20.013 -19.944 -6.623 29.020 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.528 5.528 2 C -0.139 4.139 3 Si 0.717 3.283 4 H -0.199 1.199 5 H -0.209 1.209 6 H -0.210 1.210 7 C -0.589 4.589 8 H 0.076 0.924 9 C 0.060 3.940 10 N -0.266 5.266 11 C -0.062 4.062 12 C -0.145 4.145 13 C -0.125 4.125 14 C 0.311 3.689 15 O -0.389 6.389 16 N -0.324 5.324 17 C 0.077 3.923 18 C -0.167 4.167 19 C -0.090 4.090 20 C -0.192 4.192 21 Br 0.028 6.972 22 C -0.089 4.089 23 C -0.138 4.138 24 C -0.133 4.133 25 C -0.067 4.067 26 H 0.072 0.928 27 H 0.046 0.954 28 H 0.054 0.946 29 H 0.089 0.911 30 H 0.061 0.939 31 H 0.079 0.921 32 H 0.089 0.911 33 H 0.115 0.885 34 H 0.251 0.749 35 H 0.153 0.847 36 H 0.153 0.847 37 H 0.153 0.847 38 H 0.162 0.838 39 H 0.082 0.918 40 H 0.092 0.908 41 H 0.054 0.946 42 H 0.088 0.912 Dipole moment (debyes) X Y Z Total from point charges 19.737 -21.466 -6.190 29.811 hybrid contribution 0.859 2.618 -0.113 2.757 sum 20.596 -18.849 -6.303 28.622 Atomic orbital electron populations 1.69946 1.06013 1.26772 1.50028 1.24977 0.94774 0.99179 0.94931 0.86596 0.80022 0.83997 0.77708 1.19921 1.20931 1.20951 1.21776 0.93304 0.92076 1.51756 0.92446 1.19762 0.90890 0.85411 0.97892 1.62453 1.17232 1.45453 1.01483 1.21817 0.95016 0.94185 0.95187 1.21680 0.97773 1.00929 0.94135 1.21465 0.97076 0.94205 0.99733 1.21274 0.78555 0.90107 0.78917 1.90703 1.65447 1.41154 1.41625 1.43803 1.41912 1.13484 1.33208 1.17915 0.91040 0.86316 0.97035 1.20917 0.92593 0.98740 1.04421 1.20872 0.99849 0.90251 0.98078 1.21716 0.96542 0.91747 1.09199 1.96703 1.76286 1.28251 1.95971 1.21010 0.92445 0.98859 0.96616 1.21208 1.01336 0.90209 1.01083 1.21472 0.96799 0.99883 0.95118 1.21904 0.95670 0.95048 0.94076 0.92813 0.95440 0.94616 0.91080 0.93895 0.92090 0.91062 0.88537 0.74919 0.84722 0.84713 0.84694 0.83816 0.91755 0.90792 0.94583 0.91224 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -25.51 13.29 55.43 0.74 -24.78 16 2 C 0.06 1.75 5.46 -17.82 -0.10 1.65 16 3 Si 0.89 20.71 29.54 -169.99 -5.02 15.69 16 4 H -0.27 -6.26 7.11 56.52 0.40 -5.86 16 5 H -0.28 -6.57 7.11 56.52 0.40 -6.16 16 6 H -0.28 -6.62 7.11 56.52 0.40 -6.21 16 7 C -0.55 -14.43 7.75 -34.44 -0.27 -14.70 16 8 H 0.06 1.48 5.87 -52.49 -0.31 1.17 16 9 C 0.19 4.60 5.17 -4.98 -0.03 4.58 16 10 N -0.54 -10.92 4.86 -236.12 -1.15 -12.07 16 11 C 0.07 1.17 4.93 -3.84 -0.02 1.15 16 12 C -0.11 -1.40 5.27 -26.65 -0.14 -1.54 16 13 C -0.10 -1.33 2.59 -91.65 -0.24 -1.56 16 14 C 0.52 6.53 6.89 -10.98 -0.08 6.46 16 15 O -0.52 -8.02 13.71 5.55 0.08 -7.95 16 16 N -0.68 -6.52 5.22 -9.86 -0.05 -6.58 16 17 C 0.17 1.75 6.26 -83.68 -0.52 1.22 16 18 C -0.15 -1.19 9.96 -39.40 -0.39 -1.59 16 19 C -0.07 -0.58 9.78 -39.59 -0.39 -0.96 16 20 C -0.11 -1.03 6.22 -39.49 -0.25 -1.28 16 21 Br -0.06 -0.48 33.70 -68.01 -2.29 -2.77 16 22 C -0.07 -0.67 9.78 -39.59 -0.39 -1.06 16 23 C -0.12 -1.29 8.65 -39.40 -0.34 -1.64 16 24 C -0.09 -1.42 4.68 -26.65 -0.12 -1.55 16 25 C 0.06 1.12 5.19 -3.84 -0.02 1.10 16 26 H 0.26 7.12 8.31 -40.82 -0.34 6.78 16 27 H 0.03 0.73 7.98 -51.93 -0.41 0.31 16 28 H 0.04 0.96 8.14 -51.93 -0.42 0.53 16 29 H 0.07 1.29 8.12 -51.93 -0.42 0.87 16 30 H 0.04 0.81 6.44 -51.93 -0.33 0.47 16 31 H 0.06 0.62 7.80 -51.93 -0.40 0.21 16 32 H 0.07 0.98 8.14 -51.93 -0.42 0.56 16 33 H 0.10 1.15 8.14 -51.93 -0.42 0.72 16 34 H 0.41 2.81 8.47 -40.82 -0.35 2.47 16 35 H 0.13 0.79 8.06 -52.48 -0.42 0.36 16 36 H 0.14 0.84 8.06 -52.48 -0.42 0.42 16 37 H 0.14 1.13 8.06 -52.48 -0.42 0.71 16 38 H 0.14 1.77 6.47 -52.49 -0.34 1.43 16 39 H 0.06 0.93 8.14 -51.93 -0.42 0.51 16 40 H 0.07 1.19 8.04 -51.93 -0.42 0.77 16 41 H 0.04 0.70 7.21 -51.93 -0.37 0.32 16 42 H 0.07 1.29 8.01 -51.92 -0.42 0.88 16 LS Contribution 359.69 15.07 5.42 5.42 Total: -1.00 -30.06 359.69 -11.43 -41.49 By element: Atomic # 1 Polarization: 7.12 SS G_CDS: -5.87 Total: 1.25 kcal Atomic # 6 Polarization: -6.44 SS G_CDS: -3.28 Total: -9.72 kcal Atomic # 7 Polarization: -42.96 SS G_CDS: -0.46 Total: -43.42 kcal Atomic # 8 Polarization: -8.02 SS G_CDS: 0.08 Total: -7.95 kcal Atomic # 14 Polarization: 20.71 SS G_CDS: -5.02 Total: 15.69 kcal Atomic # 35 Polarization: -0.48 SS G_CDS: -2.29 Total: -2.77 kcal Total LS contribution 5.42 Total: 5.42 kcal Total: -30.06 -11.43 -41.49 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000049750661.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 29.036 kcal (2) G-P(sol) polarization free energy of solvation -30.059 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -1.024 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.434 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.494 kcal (6) G-S(sol) free energy of system = (1) + (5) -12.458 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 4.69 seconds