Wall clock time and date at job start Tue Mar 31 2020 06:34:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30821 * 1 3 3 Si 1.86796 * 120.00401 * 2 1 4 4 H 1.48505 * 109.47307 * 240.00402 * 3 2 1 5 5 H 1.48505 * 109.47176 * 359.97438 * 3 2 1 6 6 H 1.48500 * 109.47594 * 119.99943 * 3 2 1 7 7 C 1.39934 * 119.99998 * 180.02562 * 2 1 3 8 8 H 1.08003 * 120.00478 * 196.96289 * 7 2 1 9 9 C 1.41442 * 119.99771 * 16.96112 * 7 2 1 10 10 C 1.40792 * 120.17340 * 205.66697 * 9 7 2 11 11 C 1.37721 * 120.04641 * 180.02562 * 10 9 7 12 12 C 1.38359 * 120.42167 * 359.74182 * 11 10 9 13 13 C 1.39927 * 120.35172 * 0.51962 * 12 11 10 14 14 C 1.47761 * 120.03106 * 179.76593 * 13 12 11 15 15 O 1.21473 * 120.00123 * 179.72189 * 14 13 12 16 16 O 1.34711 * 120.00050 * 359.71531 * 14 13 12 17 17 C 1.45195 * 116.99917 * 180.02562 * 16 14 13 18 18 C 1.50708 * 109.46983 * 180.02562 * 17 16 14 19 19 O 1.21281 * 119.99750 * 4.75392 * 18 17 16 20 20 N 1.34773 * 119.99782 * 184.47668 * 18 17 16 21 21 C 1.46936 * 120.56201 * 354.15161 * 20 18 17 22 22 C 1.53444 * 107.76979 * 224.64357 * 21 20 18 23 23 C 1.52840 * 108.85682 * 296.72799 * 22 21 20 24 24 C 1.50596 * 110.50979 * 51.36155 * 23 22 21 25 25 C 1.38516 * 118.92905 * 159.51301 * 24 23 22 26 26 C 1.38481 * 120.21526 * 178.98393 * 25 24 23 27 27 C 1.38305 * 120.18106 * 0.83020 * 26 25 24 28 28 C 1.38037 * 119.90547 * 359.54049 * 27 26 25 29 29 C 1.38688 * 121.53550 * 339.18790 * 24 23 22 30 30 C 1.39085 * 119.93508 * 359.48291 * 13 12 11 31 31 H 0.97001 * 119.99954 * 359.97438 * 1 2 3 32 32 H 1.07994 * 119.97403 * 359.97438 * 10 9 7 33 33 H 1.08000 * 119.79032 * 180.02562 * 11 10 9 34 34 H 1.08004 * 119.82394 * 180.27518 * 12 11 10 35 35 H 1.09004 * 109.47617 * 60.00218 * 17 16 14 36 36 H 1.08997 * 109.47493 * 299.99894 * 17 16 14 37 37 H 1.08998 * 109.80030 * 344.20844 * 21 20 18 38 38 H 1.09000 * 109.80572 * 105.01636 * 21 20 18 39 39 H 1.09006 * 109.57065 * 56.53925 * 22 21 20 40 40 H 1.08994 * 109.57085 * 176.78975 * 22 21 20 41 41 H 1.09004 * 109.27246 * 171.62587 * 23 22 21 42 42 H 1.09007 * 109.27542 * 291.09506 * 23 22 21 43 43 H 1.07999 * 119.85086 * 359.82650 * 25 24 23 44 44 H 1.08000 * 119.89404 * 180.28433 * 26 25 24 45 45 H 1.08000 * 120.04818 * 179.55702 * 27 26 25 46 46 H 1.08002 * 119.98447 * 179.97438 * 28 27 26 47 47 H 1.08002 * 120.20414 * 180.23932 * 30 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3082 0.0000 0.0000 3 14 2.2423 1.6176 0.0000 4 1 3.0960 1.6963 -1.2126 5 1 1.2774 2.7465 -0.0006 6 1 3.0961 1.6964 1.2125 7 6 2.0079 -1.2119 -0.0005 8 1 3.0527 -1.2324 0.2723 9 6 1.3468 -2.4100 -0.3584 10 6 1.8122 -3.6471 0.1265 11 6 1.1668 -4.8121 -0.2240 12 6 0.0562 -4.7770 -1.0485 13 6 -0.4178 -3.5575 -1.5446 14 6 -1.6013 -3.5287 -2.4288 15 8 -2.0154 -2.4693 -2.8551 16 8 -2.2212 -4.6774 -2.7621 17 6 -3.3770 -4.5735 -3.6347 18 6 -3.9347 -5.9490 -3.8956 19 8 -3.4640 -6.9119 -3.3279 20 7 -4.9601 -6.1084 -4.7556 21 6 -5.6273 -4.9407 -5.3474 22 6 -7.1413 -5.1792 -5.2740 23 6 -7.4908 -6.3999 -6.1248 24 6 -6.6168 -7.5690 -5.7544 25 6 -7.0365 -8.8486 -6.0786 26 6 -6.2440 -9.9413 -5.7694 27 6 -5.0363 -9.7627 -5.1195 28 6 -4.6154 -8.4908 -4.7867 29 6 -5.4043 -7.3912 -5.1051 30 6 0.2227 -2.3720 -1.2000 31 1 -0.4850 0.8401 0.0004 32 1 2.6764 -3.6825 0.7732 33 1 1.5271 -5.7588 0.1507 34 1 -0.4452 -5.6961 -1.3137 35 1 -3.0799 -4.1165 -4.5786 36 1 -4.1389 -3.9576 -3.1568 37 1 -5.3673 -4.0432 -4.7862 38 1 -5.3204 -4.8276 -6.3872 39 1 -7.4328 -5.3597 -4.2393 40 1 -7.6677 -4.3039 -5.6543 41 1 -8.5352 -6.6655 -5.9609 42 1 -7.3424 -6.1592 -7.1775 43 1 -7.9788 -8.9928 -6.5863 44 1 -6.5742 -10.9364 -6.0287 45 1 -4.4233 -10.6169 -4.8730 46 1 -3.6727 -8.3499 -4.2788 47 1 -0.1418 -1.4279 -1.5774 RHF calculation, no. of doubly occupied orbitals= 67 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000051535229.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:34:43 Heat of formation + Delta-G solvation = -62.452961 kcal Electronic energy + Delta-G solvation = -31333.888504 eV Core-core repulsion = 27025.522964 eV Total energy + Delta-G solvation = -4308.365540 eV No. of doubly occupied orbitals = 67 Molecular weight (most abundant/longest-lived isotopes) = 365.146 amu Computer time = 1.47 seconds Orbital eigenvalues (eV) -41.42259 -39.93830 -38.71677 -37.38348 -36.82742 -35.81055 -33.88988 -33.77208 -31.23842 -30.61016 -30.30800 -29.54499 -28.35395 -26.04419 -25.37934 -23.73454 -23.40425 -22.80714 -21.04982 -20.90986 -19.95305 -19.50294 -18.08542 -17.44902 -17.15120 -16.68488 -16.59642 -16.23908 -15.89454 -15.48721 -15.22469 -14.97845 -14.74993 -14.49272 -14.26287 -13.77438 -13.72501 -13.57804 -13.40708 -13.27072 -13.11216 -12.86538 -12.66102 -12.54343 -12.23056 -11.80514 -11.71725 -11.63259 -11.56775 -11.22181 -11.14307 -11.10354 -10.79999 -10.58264 -10.53650 -10.40571 -10.29885 -9.77116 -9.67540 -9.53331 -9.26794 -8.90663 -8.11779 -7.78782 -7.57411 -6.84830 -4.46517 1.05158 1.21136 1.88983 2.11869 2.28570 2.76361 3.04513 3.06142 3.12219 3.19518 3.50388 3.59726 3.88265 4.03587 4.23915 4.35642 4.47810 4.54861 4.67091 4.85377 4.88946 4.95528 4.96137 4.99979 5.09225 5.21294 5.23318 5.38704 5.45370 5.50466 5.52196 5.55536 5.68542 5.90470 5.98152 6.11344 6.20582 6.32031 6.41423 6.42209 6.52953 6.78140 6.89912 6.90706 6.93270 6.95406 7.14033 7.27396 7.64753 7.71635 7.75512 7.87358 8.06682 8.39067 8.41651 8.73784 8.76106 10.10951 Molecular weight = 365.15amu Principal moments of inertia in cm(-1) A = 0.019082 B = 0.001931 C = 0.001769 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1466.994783 B =14497.877939 C =15824.864718 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.790 5.790 2 C 0.073 3.927 3 Si 0.912 3.088 4 H -0.263 1.263 5 H -0.278 1.278 6 H -0.265 1.265 7 C -0.461 4.461 8 H 0.082 0.918 9 C 0.095 3.905 10 C -0.197 4.197 11 C -0.105 4.105 12 C -0.189 4.189 13 C -0.116 4.116 14 C 0.515 3.485 15 O -0.517 6.517 16 O -0.332 6.332 17 C 0.050 3.950 18 C 0.519 3.481 19 O -0.486 6.486 20 N -0.555 5.555 21 C 0.095 3.905 22 C -0.136 4.136 23 C -0.077 4.077 24 C -0.119 4.119 25 C -0.102 4.102 26 C -0.142 4.142 27 C -0.101 4.101 28 C -0.150 4.150 29 C 0.160 3.840 30 C -0.087 4.087 31 H 0.285 0.715 32 H 0.099 0.901 33 H 0.098 0.902 34 H 0.107 0.893 35 H 0.101 0.899 36 H 0.102 0.898 37 H 0.096 0.904 38 H 0.083 0.917 39 H 0.075 0.925 40 H 0.089 0.911 41 H 0.080 0.920 42 H 0.078 0.922 43 H 0.123 0.877 44 H 0.120 0.880 45 H 0.125 0.875 46 H 0.167 0.833 47 H 0.135 0.865 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.461 -10.662 -13.016 22.850 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.414 5.414 2 C -0.146 4.146 3 Si 0.736 3.264 4 H -0.187 1.187 5 H -0.203 1.203 6 H -0.189 1.189 7 C -0.490 4.490 8 H 0.100 0.900 9 C 0.092 3.908 10 C -0.217 4.217 11 C -0.123 4.123 12 C -0.208 4.208 13 C -0.117 4.117 14 C 0.363 3.637 15 O -0.406 6.406 16 O -0.248 6.248 17 C -0.027 4.027 18 C 0.308 3.692 19 O -0.359 6.359 20 N -0.281 5.281 21 C -0.027 4.027 22 C -0.174 4.174 23 C -0.114 4.114 24 C -0.121 4.121 25 C -0.120 4.120 26 C -0.161 4.161 27 C -0.120 4.120 28 C -0.170 4.170 29 C 0.066 3.934 30 C -0.106 4.106 31 H 0.096 0.904 32 H 0.118 0.882 33 H 0.116 0.884 34 H 0.125 0.875 35 H 0.119 0.881 36 H 0.120 0.880 37 H 0.115 0.885 38 H 0.101 0.899 39 H 0.093 0.907 40 H 0.107 0.893 41 H 0.099 0.901 42 H 0.096 0.904 43 H 0.141 0.859 44 H 0.138 0.862 45 H 0.143 0.857 46 H 0.184 0.816 47 H 0.153 0.847 Dipole moment (debyes) X Y Z Total from point charges -15.508 -10.601 -12.781 22.721 hybrid contribution 0.028 0.849 -0.093 0.855 sum -15.480 -9.752 -12.874 22.371 Atomic orbital electron populations 1.69764 1.07579 1.29862 1.34218 1.25952 0.94799 1.01556 0.92249 0.86300 0.80073 0.79985 0.80017 1.18722 1.20257 1.18927 1.19524 0.97933 0.90803 1.40739 0.89961 1.17534 0.91172 0.92649 0.89419 1.21228 1.03101 0.92780 1.04556 1.20537 0.96098 0.97008 0.98652 1.20652 0.99991 0.95563 1.04620 1.18763 0.94840 0.96083 1.02007 1.22022 0.82905 0.80385 0.78409 1.90767 1.65311 1.31392 1.53152 1.86694 1.40348 1.36288 1.61492 1.22519 0.89554 0.94081 0.96587 1.20357 0.79319 0.91191 0.78370 1.90573 1.58304 1.40546 1.46484 1.45605 1.32799 1.05980 1.43697 1.22141 0.93235 0.87437 0.99874 1.21877 0.94728 0.98984 1.01778 1.20395 0.98840 0.92176 0.99975 1.19477 0.93867 0.95588 1.03185 1.20932 0.99687 0.91272 1.00135 1.21160 0.95528 0.98628 1.00819 1.21125 0.96336 0.96922 0.97618 1.22207 1.02132 0.91067 1.01568 1.17692 0.93405 0.83885 0.98388 1.21628 0.96519 0.95738 0.96726 0.90400 0.88243 0.88387 0.87514 0.88127 0.88012 0.88533 0.89915 0.90666 0.89284 0.90136 0.90384 0.85886 0.86179 0.85727 0.81631 0.84696 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.79 -20.39 10.98 55.55 0.61 -19.78 16 2 C 0.07 1.80 5.15 -17.35 -0.09 1.72 16 3 Si 0.91 18.37 29.59 -169.99 -5.03 13.34 16 4 H -0.26 -5.25 7.11 56.52 0.40 -4.85 16 5 H -0.28 -5.48 7.11 56.52 0.40 -5.08 16 6 H -0.26 -5.22 7.11 56.52 0.40 -4.82 16 7 C -0.46 -11.85 9.05 -37.73 -0.34 -12.20 16 8 H 0.08 2.00 7.90 -52.48 -0.41 1.59 16 9 C 0.09 2.46 5.56 -106.87 -0.59 1.87 16 10 C -0.20 -4.64 9.78 -38.81 -0.38 -5.02 16 11 C -0.10 -2.29 10.01 -39.73 -0.40 -2.69 16 12 C -0.19 -4.24 9.62 -38.90 -0.37 -4.62 16 13 C -0.12 -2.78 5.87 -105.06 -0.62 -3.40 16 14 C 0.52 11.35 7.90 34.62 0.27 11.62 16 15 O -0.52 -11.91 16.12 -19.25 -0.31 -12.22 16 16 O -0.33 -6.38 9.00 -47.19 -0.42 -6.80 16 17 C 0.05 0.72 4.38 36.01 0.16 0.88 16 18 C 0.52 7.42 7.63 -10.98 -0.08 7.33 16 19 O -0.49 -8.54 13.19 -14.06 -0.19 -8.72 16 20 N -0.56 -6.38 2.97 -112.81 -0.33 -6.72 16 21 C 0.09 0.72 6.18 -3.57 -0.02 0.70 16 22 C -0.14 -0.85 6.11 -26.58 -0.16 -1.01 16 23 C -0.08 -0.50 5.78 -28.02 -0.16 -0.67 16 24 C -0.12 -1.14 5.76 -104.40 -0.60 -1.74 16 25 C -0.10 -0.89 9.68 -39.39 -0.38 -1.27 16 26 C -0.14 -1.30 10.05 -39.47 -0.40 -1.69 16 27 C -0.10 -1.08 10.05 -39.63 -0.40 -1.48 16 28 C -0.15 -1.96 8.87 -39.36 -0.35 -2.31 16 29 C 0.16 1.93 6.32 -83.58 -0.53 1.40 16 30 C -0.09 -2.27 8.23 -38.43 -0.32 -2.58 16 31 H 0.28 6.75 8.30 -40.82 -0.34 6.42 16 32 H 0.10 2.15 8.06 -52.49 -0.42 1.73 16 33 H 0.10 1.83 8.06 -52.49 -0.42 1.41 16 34 H 0.11 2.25 7.59 -52.48 -0.40 1.85 16 35 H 0.10 1.24 8.09 -51.93 -0.42 0.82 16 36 H 0.10 1.28 7.55 -51.93 -0.39 0.89 16 37 H 0.10 0.63 6.25 -51.93 -0.32 0.31 16 38 H 0.08 0.52 8.14 -51.93 -0.42 0.10 16 39 H 0.07 0.56 8.14 -51.93 -0.42 0.13 16 40 H 0.09 0.36 8.14 -51.93 -0.42 -0.06 16 41 H 0.08 0.43 8.12 -51.93 -0.42 0.01 16 42 H 0.08 0.43 8.14 -51.93 -0.42 0.00 16 43 H 0.12 0.76 8.06 -52.49 -0.42 0.34 16 44 H 0.12 0.81 8.06 -52.49 -0.42 0.39 16 45 H 0.12 1.11 8.06 -52.49 -0.42 0.68 16 46 H 0.17 2.50 4.98 -53.58 -0.27 2.23 16 47 H 0.14 3.74 5.80 -52.49 -0.30 3.43 16 LS Contribution 392.57 15.07 5.92 5.92 Total: -1.00 -31.22 392.57 -11.40 -42.62 By element: Atomic # 1 Polarization: 13.39 SS G_CDS: -5.88 Total: 7.50 kcal Atomic # 6 Polarization: -9.39 SS G_CDS: -5.76 Total: -15.15 kcal Atomic # 7 Polarization: -26.77 SS G_CDS: 0.28 Total: -26.50 kcal Atomic # 8 Polarization: -26.82 SS G_CDS: -0.92 Total: -27.74 kcal Atomic # 14 Polarization: 18.37 SS G_CDS: -5.03 Total: 13.34 kcal Total LS contribution 5.92 Total: 5.92 kcal Total: -31.22 -11.40 -42.62 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000051535229.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -19.831 kcal (2) G-P(sol) polarization free energy of solvation -31.218 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -51.049 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.404 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.622 kcal (6) G-S(sol) free energy of system = (1) + (5) -62.453 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.48 seconds