Wall clock time and date at job start Tue Mar 31 2020 06:34:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30821 * 1 3 3 Si 1.86796 * 120.00401 * 2 1 4 4 H 1.48505 * 109.47307 * 240.00402 * 3 2 1 5 5 H 1.48505 * 109.47176 * 359.97438 * 3 2 1 6 6 H 1.48500 * 109.47594 * 119.99943 * 3 2 1 7 7 C 1.39934 * 119.99998 * 180.02562 * 2 1 3 8 8 H 1.08003 * 120.00478 * 196.96289 * 7 2 1 9 9 C 1.41442 * 119.99771 * 16.96112 * 7 2 1 10 10 C 1.40792 * 120.17340 * 205.66697 * 9 7 2 11 11 C 1.37721 * 120.04641 * 180.02562 * 10 9 7 12 12 C 1.38359 * 120.42167 * 359.74182 * 11 10 9 13 13 C 1.39927 * 120.35172 * 0.51962 * 12 11 10 14 14 C 1.47761 * 120.03106 * 179.76593 * 13 12 11 15 15 O 1.21473 * 120.00123 * 179.72189 * 14 13 12 16 16 O 1.34711 * 120.00050 * 359.71531 * 14 13 12 17 17 C 1.45195 * 116.99917 * 180.02562 * 16 14 13 18 18 C 1.50708 * 109.46983 * 180.02562 * 17 16 14 19 19 O 1.21281 * 119.99750 * 4.75392 * 18 17 16 20 20 N 1.34773 * 119.99782 * 184.47668 * 18 17 16 21 21 C 1.46936 * 120.56201 * 354.15161 * 20 18 17 22 22 C 1.53444 * 107.76979 * 224.64357 * 21 20 18 23 23 C 1.52840 * 108.85682 * 296.72799 * 22 21 20 24 24 C 1.50596 * 110.50979 * 51.36155 * 23 22 21 25 25 C 1.38516 * 118.92905 * 159.51301 * 24 23 22 26 26 C 1.38481 * 120.21526 * 178.98393 * 25 24 23 27 27 C 1.38305 * 120.18106 * 0.83020 * 26 25 24 28 28 C 1.38037 * 119.90547 * 359.54049 * 27 26 25 29 29 C 1.38688 * 121.53550 * 339.18790 * 24 23 22 30 30 C 1.39085 * 119.93508 * 359.48291 * 13 12 11 31 31 H 0.97001 * 119.99954 * 359.97438 * 1 2 3 32 32 H 1.07994 * 119.97403 * 359.97438 * 10 9 7 33 33 H 1.08000 * 119.79032 * 180.02562 * 11 10 9 34 34 H 1.08004 * 119.82394 * 180.27518 * 12 11 10 35 35 H 1.09004 * 109.47617 * 60.00218 * 17 16 14 36 36 H 1.08997 * 109.47493 * 299.99894 * 17 16 14 37 37 H 1.08998 * 109.80030 * 344.20844 * 21 20 18 38 38 H 1.09000 * 109.80572 * 105.01636 * 21 20 18 39 39 H 1.09006 * 109.57065 * 56.53925 * 22 21 20 40 40 H 1.08994 * 109.57085 * 176.78975 * 22 21 20 41 41 H 1.09004 * 109.27246 * 171.62587 * 23 22 21 42 42 H 1.09007 * 109.27542 * 291.09506 * 23 22 21 43 43 H 1.07999 * 119.85086 * 359.82650 * 25 24 23 44 44 H 1.08000 * 119.89404 * 180.28433 * 26 25 24 45 45 H 1.08000 * 120.04818 * 179.55702 * 27 26 25 46 46 H 1.08002 * 119.98447 * 179.97438 * 28 27 26 47 47 H 1.08002 * 120.20414 * 180.23932 * 30 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3082 0.0000 0.0000 3 14 2.2423 1.6176 0.0000 4 1 3.0960 1.6963 -1.2126 5 1 1.2774 2.7465 -0.0006 6 1 3.0961 1.6964 1.2125 7 6 2.0079 -1.2119 -0.0005 8 1 3.0527 -1.2324 0.2723 9 6 1.3468 -2.4100 -0.3584 10 6 1.8122 -3.6471 0.1265 11 6 1.1668 -4.8121 -0.2240 12 6 0.0562 -4.7770 -1.0485 13 6 -0.4178 -3.5575 -1.5446 14 6 -1.6013 -3.5287 -2.4288 15 8 -2.0154 -2.4693 -2.8551 16 8 -2.2212 -4.6774 -2.7621 17 6 -3.3770 -4.5735 -3.6347 18 6 -3.9347 -5.9490 -3.8956 19 8 -3.4640 -6.9119 -3.3279 20 7 -4.9601 -6.1084 -4.7556 21 6 -5.6273 -4.9407 -5.3474 22 6 -7.1413 -5.1792 -5.2740 23 6 -7.4908 -6.3999 -6.1248 24 6 -6.6168 -7.5690 -5.7544 25 6 -7.0365 -8.8486 -6.0786 26 6 -6.2440 -9.9413 -5.7694 27 6 -5.0363 -9.7627 -5.1195 28 6 -4.6154 -8.4908 -4.7867 29 6 -5.4043 -7.3912 -5.1051 30 6 0.2227 -2.3720 -1.2000 31 1 -0.4850 0.8401 0.0004 32 1 2.6764 -3.6825 0.7732 33 1 1.5271 -5.7588 0.1507 34 1 -0.4452 -5.6961 -1.3137 35 1 -3.0799 -4.1165 -4.5786 36 1 -4.1389 -3.9576 -3.1568 37 1 -5.3673 -4.0432 -4.7862 38 1 -5.3204 -4.8276 -6.3872 39 1 -7.4328 -5.3597 -4.2393 40 1 -7.6677 -4.3039 -5.6543 41 1 -8.5352 -6.6655 -5.9609 42 1 -7.3424 -6.1592 -7.1775 43 1 -7.9788 -8.9928 -6.5863 44 1 -6.5742 -10.9364 -6.0287 45 1 -4.4233 -10.6169 -4.8730 46 1 -3.6727 -8.3499 -4.2788 47 1 -0.1418 -1.4279 -1.5774 RHF calculation, no. of doubly occupied orbitals= 67 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000051535229.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:34:41 Heat of formation + Delta-G solvation = -76.194196 kcal Electronic energy + Delta-G solvation = -31334.484369 eV Core-core repulsion = 27025.522964 eV Total energy + Delta-G solvation = -4308.961405 eV No. of doubly occupied orbitals = 67 Molecular weight (most abundant/longest-lived isotopes) = 365.146 amu Computer time = 1.39 seconds Orbital eigenvalues (eV) -42.37349 -41.49007 -39.76612 -39.15025 -37.61928 -37.43073 -35.62816 -34.64783 -32.50168 -31.83374 -31.40162 -31.24984 -29.46829 -27.28585 -26.73443 -25.12031 -24.12014 -23.94027 -22.88735 -21.82512 -21.64207 -20.27427 -19.76514 -18.59578 -18.28656 -18.00277 -17.93564 -17.58673 -17.01098 -16.72730 -16.59810 -16.46489 -15.89992 -15.67860 -15.24546 -15.01798 -14.95756 -14.63062 -14.46408 -14.37499 -14.32332 -14.16062 -13.83844 -13.80843 -13.51214 -13.32044 -13.00407 -12.83007 -12.59498 -12.56202 -12.24965 -12.24136 -12.16686 -12.09722 -11.99327 -11.70805 -11.58179 -11.40264 -11.21154 -11.09230 -10.64974 -9.66542 -9.65581 -9.46827 -8.94810 -8.68757 -6.40975 0.05950 0.21402 0.42305 0.94420 0.98329 1.27324 1.38904 1.46489 1.51996 1.73163 1.95992 2.19882 2.70637 2.82058 3.02196 3.59593 3.63192 3.72516 3.79851 3.83522 3.91385 3.94448 4.02775 4.19704 4.31176 4.35636 4.38215 4.48839 4.50358 4.59357 4.66820 4.73773 4.77701 4.95140 5.00387 5.02251 5.05774 5.08774 5.15491 5.22825 5.26051 5.26503 5.41368 5.43942 5.55283 5.62980 5.77374 5.86426 5.98276 6.05534 6.12377 6.19548 6.50368 6.66247 6.74153 6.84712 6.85898 8.29163 Molecular weight = 365.15amu Principal moments of inertia in cm(-1) A = 0.019082 B = 0.001931 C = 0.001769 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1466.994783 B =14497.877939 C =15824.864718 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.826 5.826 2 C 0.031 3.969 3 Si 0.985 3.015 4 H -0.260 1.260 5 H -0.271 1.271 6 H -0.254 1.254 7 C -0.493 4.493 8 H 0.088 0.912 9 C 0.066 3.934 10 C -0.201 4.201 11 C -0.100 4.100 12 C -0.184 4.184 13 C -0.128 4.128 14 C 0.522 3.478 15 O -0.533 6.533 16 O -0.339 6.339 17 C 0.046 3.954 18 C 0.516 3.484 19 O -0.530 6.530 20 N -0.547 5.547 21 C 0.082 3.918 22 C -0.132 4.132 23 C -0.076 4.076 24 C -0.117 4.117 25 C -0.101 4.101 26 C -0.140 4.140 27 C -0.115 4.115 28 C -0.181 4.181 29 C 0.132 3.868 30 C -0.116 4.116 31 H 0.289 0.711 32 H 0.117 0.883 33 H 0.137 0.863 34 H 0.122 0.878 35 H 0.123 0.877 36 H 0.121 0.879 37 H 0.106 0.894 38 H 0.100 0.900 39 H 0.061 0.939 40 H 0.119 0.881 41 H 0.100 0.900 42 H 0.096 0.904 43 H 0.157 0.843 44 H 0.148 0.852 45 H 0.133 0.867 46 H 0.137 0.863 47 H 0.111 0.889 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.247 -11.034 -14.480 25.077 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.451 5.451 2 C -0.185 4.185 3 Si 0.806 3.194 4 H -0.184 1.184 5 H -0.196 1.196 6 H -0.178 1.178 7 C -0.522 4.522 8 H 0.106 0.894 9 C 0.064 3.936 10 C -0.220 4.220 11 C -0.118 4.118 12 C -0.204 4.204 13 C -0.129 4.129 14 C 0.369 3.631 15 O -0.424 6.424 16 O -0.255 6.255 17 C -0.031 4.031 18 C 0.306 3.694 19 O -0.407 6.407 20 N -0.272 5.272 21 C -0.038 4.038 22 C -0.169 4.169 23 C -0.113 4.113 24 C -0.120 4.120 25 C -0.120 4.120 26 C -0.158 4.158 27 C -0.134 4.134 28 C -0.201 4.201 29 C 0.038 3.962 30 C -0.136 4.136 31 H 0.100 0.900 32 H 0.135 0.865 33 H 0.155 0.845 34 H 0.140 0.860 35 H 0.141 0.859 36 H 0.139 0.861 37 H 0.124 0.876 38 H 0.118 0.882 39 H 0.079 0.921 40 H 0.137 0.863 41 H 0.118 0.882 42 H 0.115 0.885 43 H 0.174 0.826 44 H 0.165 0.835 45 H 0.151 0.849 46 H 0.154 0.846 47 H 0.129 0.871 Dipole moment (debyes) X Y Z Total from point charges -17.331 -10.997 -14.273 25.000 hybrid contribution 0.447 0.748 0.276 0.914 sum -16.884 -10.249 -13.997 24.208 Atomic orbital electron populations 1.69849 1.09199 1.30932 1.35150 1.26857 0.95472 1.04940 0.91191 0.85199 0.78674 0.75301 0.80270 1.18414 1.19567 1.17816 1.19828 0.98409 0.91742 1.42182 0.89382 1.17913 0.91695 0.94045 0.89964 1.21514 1.03567 0.92533 1.04404 1.20939 0.95201 0.98131 0.97539 1.20924 1.00020 0.95479 1.03940 1.19010 0.95546 0.96085 1.02295 1.21647 0.82627 0.80747 0.78061 1.90741 1.65773 1.32121 1.53748 1.86623 1.41859 1.34750 1.62234 1.22895 0.88363 0.94954 0.96874 1.20357 0.79906 0.90436 0.78735 1.90576 1.60029 1.41549 1.48568 1.45652 1.31776 1.07204 1.42569 1.22541 0.94228 0.86281 1.00740 1.21904 0.93550 1.00250 1.01221 1.20518 0.99060 0.90851 1.00889 1.19918 0.93006 0.97418 1.01640 1.21391 1.00653 0.90618 0.99308 1.21521 0.94534 1.00322 0.99433 1.21306 0.97539 0.96315 0.98211 1.22108 1.01903 0.92875 1.03165 1.17941 0.94680 0.83614 0.99926 1.21451 0.98024 0.95564 0.98557 0.90012 0.86500 0.84491 0.86005 0.85927 0.86111 0.87627 0.88177 0.92052 0.86268 0.88210 0.88542 0.82564 0.83460 0.84909 0.84566 0.87115 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.83 -44.20 10.98 21.82 0.24 -43.96 16 2 C 0.03 1.54 5.15 85.25 0.44 1.98 16 3 Si 0.99 38.05 29.59 68.60 2.03 40.08 16 4 H -0.26 -9.82 7.11 99.48 0.71 -9.11 16 5 H -0.27 -10.06 7.11 99.48 0.71 -9.35 16 6 H -0.25 -9.31 7.11 99.48 0.71 -8.60 16 7 C -0.49 -26.01 9.05 23.47 0.21 -25.79 16 8 H 0.09 4.36 7.90 -2.91 -0.02 4.33 16 9 C 0.07 3.54 5.56 -21.32 -0.12 3.42 16 10 C -0.20 -9.43 9.78 22.77 0.22 -9.21 16 11 C -0.10 -4.27 10.01 22.18 0.22 -4.05 16 12 C -0.18 -8.27 9.62 22.71 0.22 -8.05 16 13 C -0.13 -6.33 5.87 -20.15 -0.12 -6.44 16 14 C 0.52 23.54 7.90 70.34 0.56 24.09 16 15 O -0.53 -25.18 16.12 19.92 0.32 -24.86 16 16 O -0.34 -13.27 9.00 -49.84 -0.45 -13.72 16 17 C 0.05 1.31 4.38 71.24 0.31 1.63 16 18 C 0.52 15.22 7.63 87.66 0.67 15.89 16 19 O -0.53 -19.80 13.19 15.72 0.21 -19.60 16 20 N -0.55 -12.49 2.97 -629.20 -1.87 -14.35 16 21 C 0.08 1.10 6.18 86.45 0.53 1.64 16 22 C -0.13 -1.27 6.11 30.69 0.19 -1.09 16 23 C -0.08 -0.73 5.78 29.76 0.17 -0.56 16 24 C -0.12 -2.01 5.76 -19.72 -0.11 -2.13 16 25 C -0.10 -1.47 9.68 22.39 0.22 -1.25 16 26 C -0.14 -2.26 10.05 22.34 0.22 -2.04 16 27 C -0.12 -2.49 10.05 22.24 0.22 -2.26 16 28 C -0.18 -4.96 8.87 22.41 0.20 -4.76 16 29 C 0.13 3.15 6.32 38.10 0.24 3.40 16 30 C -0.12 -6.34 8.23 23.02 0.19 -6.15 16 31 H 0.29 14.17 8.30 -92.71 -0.77 13.40 16 32 H 0.12 4.97 8.06 -2.91 -0.02 4.95 16 33 H 0.14 4.72 8.06 -2.91 -0.02 4.70 16 34 H 0.12 5.07 7.59 -2.91 -0.02 5.05 16 35 H 0.12 2.95 8.09 -2.38 -0.02 2.93 16 36 H 0.12 2.98 7.55 -2.39 -0.02 2.97 16 37 H 0.11 1.20 6.25 -2.39 -0.01 1.18 16 38 H 0.10 1.02 8.14 -2.39 -0.02 1.00 16 39 H 0.06 0.79 8.14 -2.38 -0.02 0.77 16 40 H 0.12 0.48 8.14 -2.39 -0.02 0.46 16 41 H 0.10 0.62 8.12 -2.39 -0.02 0.61 16 42 H 0.10 0.63 8.14 -2.38 -0.02 0.61 16 43 H 0.16 1.21 8.06 -2.91 -0.02 1.18 16 44 H 0.15 1.53 8.06 -2.91 -0.02 1.51 16 45 H 0.13 2.44 8.06 -2.91 -0.02 2.42 16 46 H 0.14 4.55 4.98 -20.23 -0.10 4.45 16 47 H 0.11 6.51 5.80 -2.91 -0.02 6.49 16 Total: -1.00 -72.30 392.57 6.09 -66.21 By element: Atomic # 1 Polarization: 31.01 SS G_CDS: 0.92 Total: 31.93 kcal Atomic # 6 Polarization: -26.43 SS G_CDS: 4.69 Total: -21.74 kcal Atomic # 7 Polarization: -56.68 SS G_CDS: -1.63 Total: -58.31 kcal Atomic # 8 Polarization: -58.25 SS G_CDS: 0.08 Total: -58.17 kcal Atomic # 14 Polarization: 38.05 SS G_CDS: 2.03 Total: 40.08 kcal Total: -72.30 6.09 -66.21 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000051535229.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -9.985 kcal (2) G-P(sol) polarization free energy of solvation -72.302 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -82.287 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.093 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.209 kcal (6) G-S(sol) free energy of system = (1) + (5) -76.194 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.39 seconds