Wall clock time and date at job start Tue Mar 31 2020 06:56:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50705 * 1 3 3 C 1.33817 * 124.52387 * 2 1 4 4 C 1.37475 * 115.09861 * 180.26802 * 3 2 1 5 5 C 1.36644 * 113.29840 * 0.02562 * 4 3 2 6 6 C 1.46582 * 125.46112 * 179.97438 * 5 4 3 7 7 O 1.21707 * 119.99779 * 8.36783 * 6 5 4 8 8 N 1.34776 * 120.00509 * 188.36776 * 6 5 4 9 9 C 1.47080 * 120.88015 * 15.55687 * 8 6 5 10 10 C 1.53694 * 108.27833 * 128.75351 * 9 8 6 11 11 N 1.46906 * 109.25366 * 54.08460 * 10 9 8 12 12 C 1.46898 * 110.99888 * 172.61034 * 11 10 9 13 13 C 1.50697 * 109.47471 * 61.25897 * 12 11 10 14 14 O 1.21275 * 119.99811 * 356.67727 * 13 12 11 15 15 N 1.34778 * 120.00025 * 176.67678 * 13 12 11 16 16 C 1.46496 * 120.00055 * 0.02562 * 15 13 12 17 17 C 1.46503 * 119.99765 * 179.97438 * 15 13 12 18 18 C 1.50695 * 109.46795 * 90.00507 * 17 15 13 19 19 H 1.07997 * 120.00198 * 359.97438 * 18 17 15 20 20 C 1.37882 * 119.99746 * 180.02562 * 18 17 15 21 21 N 1.31511 * 119.99977 * 359.97438 * 20 18 17 22 22 Si 1.86796 * 120.00185 * 179.97438 * 20 18 17 23 23 H 1.48502 * 109.46824 * 359.97438 * 22 20 18 24 24 H 1.48498 * 109.47353 * 119.99313 * 22 20 18 25 25 H 1.48499 * 109.47170 * 239.99877 * 22 20 18 26 26 C 1.46905 * 111.26641 * 296.75444 * 11 10 9 27 27 C 1.47079 * 120.88215 * 195.83717 * 8 6 5 28 28 S 1.70620 * 124.51766 * 180.31054 * 2 1 3 29 29 H 1.08990 * 109.47276 * 179.71867 * 1 2 3 30 30 H 1.09000 * 109.46468 * 299.72182 * 1 2 3 31 31 H 1.09002 * 109.46539 * 59.71785 * 1 2 3 32 32 H 1.07994 * 122.45170 * 0.29481 * 3 2 1 33 33 H 1.08001 * 123.34994 * 179.97438 * 4 3 2 34 34 H 1.08999 * 109.63009 * 248.52881 * 9 8 6 35 35 H 1.09006 * 109.62822 * 9.10595 * 9 8 6 36 36 H 1.09001 * 109.65135 * 294.08130 * 10 9 8 37 37 H 1.09000 * 109.42259 * 173.94635 * 10 9 8 38 38 H 1.09002 * 109.47387 * 181.26382 * 12 11 10 39 39 H 1.09004 * 109.46881 * 301.25694 * 12 11 10 40 40 H 1.09004 * 109.47348 * 89.99467 * 16 15 13 41 41 H 1.08998 * 109.47171 * 209.99526 * 16 15 13 42 42 H 1.08999 * 109.47104 * 330.00005 * 16 15 13 43 43 H 1.09003 * 109.46690 * 209.99998 * 17 15 13 44 44 H 1.08996 * 109.47219 * 330.00037 * 17 15 13 45 45 H 0.97002 * 119.99923 * 180.02562 * 21 20 18 46 46 H 1.08996 * 109.49238 * 303.14556 * 26 11 10 47 47 H 1.08999 * 109.50759 * 183.07485 * 26 11 10 48 48 H 1.08999 * 109.62817 * 350.89375 * 27 8 6 49 49 H 1.09001 * 109.62678 * 111.47652 * 27 8 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 6 2.2655 1.1025 0.0000 4 6 3.6216 0.8774 -0.0058 5 6 3.9493 -0.4492 -0.0112 6 6 5.3122 -0.9885 -0.0185 7 8 6.2624 -0.2432 0.1331 8 7 5.5134 -2.3097 -0.1932 9 6 4.4418 -3.1746 -0.7098 10 6 5.0030 -3.9855 -1.8886 11 7 6.2166 -4.6918 -1.4566 12 6 6.6872 -5.6150 -2.4977 13 6 7.0290 -4.8368 -3.7421 14 8 6.8372 -3.6400 -3.7806 15 7 7.5478 -5.4709 -4.8123 16 6 7.7790 -6.9168 -4.7659 17 6 7.8796 -4.7144 -6.0222 18 6 9.3035 -4.2286 -5.9361 19 1 9.9013 -4.4597 -5.0669 20 6 9.8426 -3.4879 -6.9666 21 7 9.1144 -3.2060 -8.0248 22 14 11.6074 -2.8850 -6.8597 23 1 12.2063 -3.3322 -5.5765 24 1 12.3901 -3.4415 -7.9923 25 1 11.6285 -1.4016 -6.9249 26 6 7.2745 -3.7476 -1.0729 27 6 6.8083 -2.9258 0.1336 28 16 2.4739 -1.4058 -0.0076 29 1 -0.3633 -1.0275 -0.0050 30 1 -0.3632 0.5095 0.8925 31 1 -0.3632 0.5182 -0.8875 32 1 1.8431 2.0964 0.0047 33 1 4.3551 1.6701 -0.0070 34 1 4.1056 -3.8504 0.0765 35 1 3.6078 -2.5607 -1.0502 36 1 5.2466 -3.3144 -2.7123 37 1 4.2581 -4.7101 -2.2174 38 1 7.5735 -6.1412 -2.1433 39 1 5.9027 -6.3370 -2.7247 40 1 6.8887 -7.4386 -5.1172 41 1 8.6246 -7.1702 -5.4053 42 1 7.9956 -7.2175 -3.7409 43 1 7.7673 -5.3576 -6.8950 44 1 7.2089 -3.8600 -6.1118 45 1 9.4939 -2.6853 -8.7499 46 1 7.4864 -3.0798 -1.9079 47 1 8.1771 -4.2993 -0.8102 48 1 7.5396 -2.1475 0.3511 49 1 6.6952 -3.5783 0.9994 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000055930137.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:56:59 Heat of formation + Delta-G solvation = -7.604486 kcal Electronic energy + Delta-G solvation = -31186.514719 eV Core-core repulsion = 27048.264290 eV Total energy + Delta-G solvation = -4138.250429 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 365.156 amu Computer time = 0.99 seconds Orbital eigenvalues (eV) -40.42924 -39.43053 -38.10377 -37.14729 -35.04756 -34.28137 -32.66427 -32.41678 -31.16606 -29.50960 -27.96620 -27.21527 -25.93250 -24.90346 -24.04664 -23.53595 -22.57193 -21.71872 -20.24043 -18.71263 -18.54142 -18.00333 -16.62964 -16.48919 -16.26346 -16.11045 -15.57049 -15.41498 -15.33040 -15.00975 -14.62171 -14.55065 -14.28051 -14.23161 -13.72280 -13.67821 -13.32629 -13.12349 -13.03184 -12.63039 -12.45808 -12.25948 -12.23227 -12.16551 -11.96014 -11.76917 -11.74172 -11.55098 -11.25634 -11.08603 -10.95731 -10.78069 -10.67774 -10.61438 -10.20714 -10.02670 -9.74050 -9.62213 -8.94016 -8.67767 -8.66087 -8.47370 -7.84461 -7.70017 -6.08135 -4.13032 0.32993 1.26575 1.67560 2.21792 2.83353 3.12607 3.26359 3.27858 3.36230 3.40022 3.90553 3.96461 4.37968 4.42192 4.52248 4.80596 4.87017 4.95775 5.07140 5.10233 5.12394 5.14844 5.23698 5.27226 5.34935 5.36140 5.44179 5.54752 5.56547 5.58208 5.63137 5.68356 5.79698 5.83150 5.86516 5.97279 6.14784 6.18547 6.22810 6.36070 6.43901 6.84735 7.01034 7.02416 7.30761 7.38463 7.47642 7.87753 8.04769 8.18769 8.33203 8.84486 9.00190 9.52422 11.00013 Molecular weight = 365.16amu Principal moments of inertia in cm(-1) A = 0.011957 B = 0.002471 C = 0.002345 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2341.125030 B =11329.607408 C =11936.094550 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.084 4.084 2 C -0.219 4.219 3 C -0.159 4.159 4 C -0.048 4.048 5 C -0.271 4.271 6 C 0.594 3.406 7 O -0.528 6.528 8 N -0.611 5.611 9 C 0.110 3.890 10 C 0.023 3.977 11 N -0.513 5.513 12 C 0.034 3.966 13 C 0.470 3.530 14 O -0.539 6.539 15 N -0.599 5.599 16 C 0.082 3.918 17 C 0.244 3.756 18 C -0.525 4.525 19 H 0.057 0.943 20 C 0.061 3.939 21 N -0.894 5.894 22 Si 0.898 3.102 23 H -0.273 1.273 24 H -0.283 1.283 25 H -0.282 1.282 26 C 0.023 3.977 27 C 0.126 3.874 28 S 0.223 5.777 29 H 0.067 0.933 30 H 0.077 0.923 31 H 0.078 0.922 32 H 0.140 0.860 33 H 0.152 0.848 34 H 0.079 0.921 35 H 0.085 0.915 36 H 0.087 0.913 37 H 0.081 0.919 38 H 0.101 0.899 39 H 0.100 0.900 40 H 0.045 0.955 41 H 0.074 0.926 42 H 0.058 0.942 43 H 0.031 0.969 44 H 0.042 0.958 45 H 0.263 0.737 46 H 0.078 0.922 47 H 0.082 0.918 48 H 0.095 0.905 49 H 0.073 0.927 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.897 -2.830 18.158 24.964 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C -0.337 4.337 3 C -0.189 4.189 4 C -0.081 4.081 5 C -0.391 4.391 6 C 0.382 3.618 7 O -0.406 6.406 8 N -0.345 5.345 9 C -0.016 4.016 10 C -0.105 4.105 11 N -0.236 5.236 12 C -0.098 4.098 13 C 0.256 3.744 14 O -0.418 6.418 15 N -0.332 5.332 16 C -0.062 4.062 17 C 0.125 3.875 18 C -0.564 4.564 19 H 0.075 0.925 20 C -0.141 4.141 21 N -0.533 5.533 22 Si 0.725 3.275 23 H -0.198 1.198 24 H -0.209 1.209 25 H -0.208 1.208 26 C -0.106 4.106 27 C 0.004 3.996 28 S 0.491 5.509 29 H 0.086 0.914 30 H 0.096 0.904 31 H 0.096 0.904 32 H 0.158 0.842 33 H 0.169 0.831 34 H 0.097 0.903 35 H 0.102 0.898 36 H 0.105 0.895 37 H 0.100 0.900 38 H 0.119 0.881 39 H 0.118 0.882 40 H 0.064 0.936 41 H 0.093 0.907 42 H 0.077 0.923 43 H 0.049 0.951 44 H 0.060 0.940 45 H 0.073 0.927 46 H 0.096 0.904 47 H 0.100 0.900 48 H 0.113 0.887 49 H 0.091 0.909 Dipole moment (debyes) X Y Z Total from point charges -16.936 -3.523 18.456 25.295 hybrid contribution 1.476 2.255 -0.955 2.859 sum -15.460 -1.268 17.500 23.386 Atomic orbital electron populations 1.20367 0.87691 1.03005 1.03193 1.24787 1.01937 0.99922 1.07082 1.19899 0.92578 0.99602 1.06819 1.20748 0.96234 0.95209 0.95952 1.24576 0.96806 0.98089 1.19645 1.16975 0.86785 0.81611 0.76389 1.90820 1.42144 1.57345 1.50281 1.47854 1.14621 1.06837 1.65191 1.22203 0.89047 0.93132 0.97174 1.22803 0.92393 0.98234 0.97118 1.62455 1.05353 1.19363 1.36473 1.22320 1.02285 0.95857 0.89291 1.21615 0.78690 0.88622 0.85447 1.90593 1.54281 1.14865 1.82060 1.48323 1.60524 1.07994 1.16316 1.21660 1.01195 0.81686 1.01678 1.19288 0.96372 0.91747 0.80132 1.21424 0.97264 1.33871 1.03836 0.92525 1.24942 0.98212 0.95754 0.95225 1.69937 1.36496 1.39191 1.07710 0.86446 0.84345 0.78752 0.77916 1.19795 1.20913 1.20833 1.22700 0.93921 0.95451 0.98490 1.21711 0.84352 0.96539 0.97031 1.83321 0.93445 1.06334 1.67788 0.91358 0.90443 0.90370 0.84209 0.83073 0.90255 0.89789 0.89541 0.90029 0.88139 0.88223 0.93620 0.90726 0.92330 0.95111 0.93987 0.92740 0.90427 0.89981 0.88686 0.90905 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -0.50 10.33 36.01 0.37 -0.13 16 2 C -0.22 -1.97 6.28 -35.86 -0.23 -2.19 16 3 C -0.16 -1.56 10.00 -41.41 -0.41 -1.97 16 4 C -0.05 -0.58 10.02 -40.44 -0.41 -0.99 16 5 C -0.27 -3.56 6.15 -36.79 -0.23 -3.78 16 6 C 0.59 9.40 7.57 -12.90 -0.10 9.30 16 7 O -0.53 -10.07 16.39 5.18 0.08 -9.98 16 8 N -0.61 -8.63 3.00 -173.76 -0.52 -9.15 16 9 C 0.11 1.28 5.39 -3.37 -0.02 1.26 16 10 C 0.02 0.31 5.17 -3.46 -0.02 0.30 16 11 N -0.51 -6.96 4.83 -235.46 -1.14 -8.09 16 12 C 0.03 0.46 4.47 -4.98 -0.02 0.44 16 13 C 0.47 9.09 7.08 -10.99 -0.08 9.01 16 14 O -0.54 -12.66 11.23 5.56 0.06 -12.60 16 15 N -0.60 -12.16 2.86 -182.96 -0.52 -12.68 16 16 C 0.08 1.21 10.26 59.84 0.61 1.82 16 17 C 0.24 6.31 5.16 -5.19 -0.03 6.28 16 18 C -0.53 -14.84 9.39 -34.44 -0.32 -15.17 16 19 H 0.06 1.61 7.81 -52.49 -0.41 1.20 16 20 C 0.06 1.75 5.46 -17.82 -0.10 1.65 16 21 N -0.89 -26.72 13.29 55.43 0.74 -25.99 16 22 Si 0.90 22.10 29.54 -169.99 -5.02 17.08 16 23 H -0.27 -6.64 7.11 56.52 0.40 -6.23 16 24 H -0.28 -6.76 7.11 56.52 0.40 -6.36 16 25 H -0.28 -7.00 7.11 56.52 0.40 -6.60 16 26 C 0.02 0.34 5.18 -3.70 -0.02 0.32 16 27 C 0.13 1.70 6.62 -3.60 -0.02 1.68 16 28 S 0.22 2.13 18.48 -107.50 -1.99 0.14 16 29 H 0.07 0.34 8.11 -51.93 -0.42 -0.08 16 30 H 0.08 0.38 8.14 -51.93 -0.42 -0.04 16 31 H 0.08 0.42 8.14 -51.93 -0.42 0.00 16 32 H 0.14 1.08 8.06 -52.49 -0.42 0.65 16 33 H 0.15 1.79 8.06 -52.49 -0.42 1.37 16 34 H 0.08 0.76 8.14 -51.93 -0.42 0.34 16 35 H 0.09 0.93 3.89 -21.75 -0.08 0.85 16 36 H 0.09 1.55 5.54 -51.93 -0.29 1.26 16 37 H 0.08 0.93 8.10 -51.93 -0.42 0.50 16 38 H 0.10 1.20 7.18 -51.93 -0.37 0.83 16 39 H 0.10 1.11 8.13 -51.93 -0.42 0.69 16 40 H 0.05 0.57 8.14 -51.93 -0.42 0.15 16 41 H 0.07 1.16 8.07 -51.93 -0.42 0.74 16 42 H 0.06 0.68 6.35 -51.93 -0.33 0.35 16 43 H 0.03 0.81 8.07 -51.93 -0.42 0.39 16 44 H 0.04 1.23 7.42 -51.93 -0.39 0.85 16 45 H 0.26 7.41 8.31 -40.82 -0.34 7.07 16 46 H 0.08 1.53 5.92 -51.93 -0.31 1.22 16 47 H 0.08 1.10 8.08 -51.93 -0.42 0.68 16 48 H 0.09 1.38 7.09 -51.93 -0.37 1.01 16 49 H 0.07 0.82 8.14 -51.93 -0.42 0.40 16 LS Contribution 400.37 15.07 6.03 6.03 Total: -1.00 -35.76 400.37 -10.44 -46.20 By element: Atomic # 1 Polarization: 8.39 SS G_CDS: -7.16 Total: 1.23 kcal Atomic # 6 Polarization: 8.83 SS G_CDS: -1.01 Total: 7.82 kcal Atomic # 7 Polarization: -54.47 SS G_CDS: -1.44 Total: -55.91 kcal Atomic # 8 Polarization: -22.73 SS G_CDS: 0.15 Total: -22.59 kcal Atomic # 14 Polarization: 22.10 SS G_CDS: -5.02 Total: 17.08 kcal Atomic # 16 Polarization: 2.13 SS G_CDS: -1.99 Total: 0.14 kcal Total LS contribution 6.03 Total: 6.03 kcal Total: -35.76 -10.44 -46.20 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000055930137.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 38.597 kcal (2) G-P(sol) polarization free energy of solvation -35.759 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 2.838 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.442 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.201 kcal (6) G-S(sol) free energy of system = (1) + (5) -7.604 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.00 seconds