Wall clock time and date at job start Tue Mar 31 2020 06:56:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50705 * 1 3 3 C 1.33817 * 124.52387 * 2 1 4 4 C 1.37475 * 115.09861 * 180.26802 * 3 2 1 5 5 C 1.36644 * 113.29840 * 0.02562 * 4 3 2 6 6 C 1.46582 * 125.46112 * 179.97438 * 5 4 3 7 7 O 1.21707 * 119.99779 * 8.36783 * 6 5 4 8 8 N 1.34776 * 120.00509 * 188.36776 * 6 5 4 9 9 C 1.47080 * 120.88015 * 15.55687 * 8 6 5 10 10 C 1.53694 * 108.27833 * 128.75351 * 9 8 6 11 11 N 1.46906 * 109.25366 * 54.08460 * 10 9 8 12 12 C 1.46898 * 110.99888 * 172.61034 * 11 10 9 13 13 C 1.50697 * 109.47471 * 61.25897 * 12 11 10 14 14 O 1.21275 * 119.99811 * 356.67727 * 13 12 11 15 15 N 1.34778 * 120.00025 * 176.67678 * 13 12 11 16 16 C 1.46496 * 120.00055 * 0.02562 * 15 13 12 17 17 C 1.46503 * 119.99765 * 179.97438 * 15 13 12 18 18 C 1.50695 * 109.46795 * 90.00507 * 17 15 13 19 19 H 1.07997 * 120.00198 * 359.97438 * 18 17 15 20 20 C 1.37882 * 119.99746 * 180.02562 * 18 17 15 21 21 N 1.31511 * 119.99977 * 359.97438 * 20 18 17 22 22 Si 1.86796 * 120.00185 * 179.97438 * 20 18 17 23 23 H 1.48502 * 109.46824 * 359.97438 * 22 20 18 24 24 H 1.48498 * 109.47353 * 119.99313 * 22 20 18 25 25 H 1.48499 * 109.47170 * 239.99877 * 22 20 18 26 26 C 1.46905 * 111.26641 * 296.75444 * 11 10 9 27 27 C 1.47079 * 120.88215 * 195.83717 * 8 6 5 28 28 S 1.70620 * 124.51766 * 180.31054 * 2 1 3 29 29 H 1.08990 * 109.47276 * 179.71867 * 1 2 3 30 30 H 1.09000 * 109.46468 * 299.72182 * 1 2 3 31 31 H 1.09002 * 109.46539 * 59.71785 * 1 2 3 32 32 H 1.07994 * 122.45170 * 0.29481 * 3 2 1 33 33 H 1.08001 * 123.34994 * 179.97438 * 4 3 2 34 34 H 1.08999 * 109.63009 * 248.52881 * 9 8 6 35 35 H 1.09006 * 109.62822 * 9.10595 * 9 8 6 36 36 H 1.09001 * 109.65135 * 294.08130 * 10 9 8 37 37 H 1.09000 * 109.42259 * 173.94635 * 10 9 8 38 38 H 1.09002 * 109.47387 * 181.26382 * 12 11 10 39 39 H 1.09004 * 109.46881 * 301.25694 * 12 11 10 40 40 H 1.09004 * 109.47348 * 89.99467 * 16 15 13 41 41 H 1.08998 * 109.47171 * 209.99526 * 16 15 13 42 42 H 1.08999 * 109.47104 * 330.00005 * 16 15 13 43 43 H 1.09003 * 109.46690 * 209.99998 * 17 15 13 44 44 H 1.08996 * 109.47219 * 330.00037 * 17 15 13 45 45 H 0.97002 * 119.99923 * 180.02562 * 21 20 18 46 46 H 1.08996 * 109.49238 * 303.14556 * 26 11 10 47 47 H 1.08999 * 109.50759 * 183.07485 * 26 11 10 48 48 H 1.08999 * 109.62817 * 350.89375 * 27 8 6 49 49 H 1.09001 * 109.62678 * 111.47652 * 27 8 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 6 2.2655 1.1025 0.0000 4 6 3.6216 0.8774 -0.0058 5 6 3.9493 -0.4492 -0.0112 6 6 5.3122 -0.9885 -0.0185 7 8 6.2624 -0.2432 0.1331 8 7 5.5134 -2.3097 -0.1932 9 6 4.4418 -3.1746 -0.7098 10 6 5.0030 -3.9855 -1.8886 11 7 6.2166 -4.6918 -1.4566 12 6 6.6872 -5.6150 -2.4977 13 6 7.0290 -4.8368 -3.7421 14 8 6.8372 -3.6400 -3.7806 15 7 7.5478 -5.4709 -4.8123 16 6 7.7790 -6.9168 -4.7659 17 6 7.8796 -4.7144 -6.0222 18 6 9.3035 -4.2286 -5.9361 19 1 9.9013 -4.4597 -5.0669 20 6 9.8426 -3.4879 -6.9666 21 7 9.1144 -3.2060 -8.0248 22 14 11.6074 -2.8850 -6.8597 23 1 12.2063 -3.3322 -5.5765 24 1 12.3901 -3.4415 -7.9923 25 1 11.6285 -1.4016 -6.9249 26 6 7.2745 -3.7476 -1.0729 27 6 6.8083 -2.9258 0.1336 28 16 2.4739 -1.4058 -0.0076 29 1 -0.3633 -1.0275 -0.0050 30 1 -0.3632 0.5095 0.8925 31 1 -0.3632 0.5182 -0.8875 32 1 1.8431 2.0964 0.0047 33 1 4.3551 1.6701 -0.0070 34 1 4.1056 -3.8504 0.0765 35 1 3.6078 -2.5607 -1.0502 36 1 5.2466 -3.3144 -2.7123 37 1 4.2581 -4.7101 -2.2174 38 1 7.5735 -6.1412 -2.1433 39 1 5.9027 -6.3370 -2.7247 40 1 6.8887 -7.4386 -5.1172 41 1 8.6246 -7.1702 -5.4053 42 1 7.9956 -7.2175 -3.7409 43 1 7.7673 -5.3576 -6.8950 44 1 7.2089 -3.8600 -6.1118 45 1 9.4939 -2.6853 -8.7499 46 1 7.4864 -3.0798 -1.9079 47 1 8.1771 -4.2993 -0.8102 48 1 7.5396 -2.1475 0.3511 49 1 6.6952 -3.5783 0.9994 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000055930137.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:56:58 Heat of formation + Delta-G solvation = -33.461753 kcal Electronic energy + Delta-G solvation = -31187.635975 eV Core-core repulsion = 27048.264290 eV Total energy + Delta-G solvation = -4139.371685 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 365.156 amu Computer time = 1.13 seconds Orbital eigenvalues (eV) -41.63960 -40.76940 -39.07389 -38.32239 -36.63655 -35.55953 -34.76346 -33.23122 -32.16407 -30.90686 -29.52983 -28.21215 -27.28504 -26.31851 -25.05789 -24.55703 -24.17599 -22.82423 -21.32066 -20.11113 -19.49488 -19.11772 -18.74410 -17.92668 -17.39444 -17.20767 -16.85454 -16.67619 -16.50607 -16.27013 -16.04088 -15.98511 -15.50643 -15.15963 -14.88631 -14.72342 -14.45265 -14.34629 -14.08498 -13.88379 -13.64157 -13.51429 -13.39618 -13.27184 -13.14831 -13.00033 -12.86358 -12.75781 -12.72442 -12.65509 -12.49193 -12.26387 -12.14487 -12.07253 -11.68111 -11.51996 -11.22178 -11.19624 -10.70402 -10.00499 -9.59603 -9.44297 -9.40382 -9.14989 -8.27837 -6.42436 -0.56070 0.43679 0.86867 1.30028 1.31861 1.33385 1.44186 1.78047 1.80898 2.05873 2.28962 2.46983 2.82922 3.01713 3.38687 3.78391 3.79428 3.86943 3.91603 4.04768 4.20714 4.25888 4.35041 4.36452 4.36854 4.47230 4.52651 4.60877 4.61695 4.66759 4.71457 4.75477 4.75495 4.96250 4.99741 5.01592 5.04437 5.07409 5.14201 5.18395 5.21249 5.35680 5.40678 5.52978 5.73984 5.82848 5.85528 6.01853 6.20414 6.65893 6.79893 6.89528 7.24404 7.49040 8.79001 Molecular weight = 365.16amu Principal moments of inertia in cm(-1) A = 0.011957 B = 0.002471 C = 0.002345 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2341.125030 B =11329.607408 C =11936.094550 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.087 4.087 2 C -0.207 4.207 3 C -0.173 4.173 4 C -0.055 4.055 5 C -0.317 4.317 6 C 0.584 3.416 7 O -0.581 6.581 8 N -0.614 5.614 9 C 0.111 3.889 10 C 0.023 3.977 11 N -0.493 5.493 12 C 0.046 3.954 13 C 0.459 3.541 14 O -0.590 6.590 15 N -0.610 5.610 16 C 0.077 3.923 17 C 0.260 3.740 18 C -0.538 4.538 19 H 0.051 0.949 20 C 0.006 3.994 21 N -0.929 5.929 22 Si 0.964 3.036 23 H -0.267 1.267 24 H -0.265 1.265 25 H -0.286 1.286 26 C 0.028 3.972 27 C 0.127 3.873 28 S 0.273 5.727 29 H 0.082 0.918 30 H 0.094 0.906 31 H 0.089 0.911 32 H 0.161 0.839 33 H 0.139 0.861 34 H 0.115 0.885 35 H 0.090 0.910 36 H 0.037 0.963 37 H 0.113 0.887 38 H 0.128 0.872 39 H 0.140 0.860 40 H 0.073 0.927 41 H 0.061 0.939 42 H 0.099 0.901 43 H 0.021 0.979 44 H -0.008 1.008 45 H 0.267 0.733 46 H 0.021 0.979 47 H 0.099 0.901 48 H 0.074 0.926 49 H 0.107 0.893 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.800 -5.512 20.219 28.154 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C -0.327 4.327 3 C -0.202 4.202 4 C -0.089 4.089 5 C -0.437 4.437 6 C 0.375 3.625 7 O -0.463 6.463 8 N -0.347 5.347 9 C -0.013 4.013 10 C -0.106 4.106 11 N -0.215 5.215 12 C -0.085 4.085 13 C 0.248 3.752 14 O -0.472 6.472 15 N -0.342 5.342 16 C -0.065 4.065 17 C 0.138 3.862 18 C -0.576 4.576 19 H 0.069 0.931 20 C -0.193 4.193 21 N -0.569 5.569 22 Si 0.789 3.211 23 H -0.191 1.191 24 H -0.190 1.190 25 H -0.212 1.212 26 C -0.101 4.101 27 C 0.005 3.995 28 S 0.542 5.458 29 H 0.101 0.899 30 H 0.112 0.888 31 H 0.107 0.893 32 H 0.178 0.822 33 H 0.157 0.843 34 H 0.133 0.867 35 H 0.107 0.893 36 H 0.055 0.945 37 H 0.131 0.869 38 H 0.146 0.854 39 H 0.158 0.842 40 H 0.092 0.908 41 H 0.080 0.920 42 H 0.118 0.882 43 H 0.039 0.961 44 H 0.010 0.990 45 H 0.076 0.924 46 H 0.040 0.960 47 H 0.118 0.882 48 H 0.093 0.907 49 H 0.125 0.875 Dipole moment (debyes) X Y Z Total from point charges -18.860 -6.291 20.532 28.581 hybrid contribution 1.939 3.091 -1.621 3.992 sum -16.921 -3.200 18.911 25.577 Atomic orbital electron populations 1.20545 0.85032 1.04426 1.04477 1.25293 1.03677 0.99318 1.04385 1.20041 0.91452 1.01119 1.07617 1.20910 0.97432 0.94875 0.95716 1.24507 0.97213 0.99365 1.22617 1.17472 0.87564 0.81876 0.75635 1.90768 1.43996 1.58566 1.52954 1.48027 1.15378 1.06742 1.64540 1.22391 0.88356 0.93106 0.97417 1.22809 0.93131 0.98306 0.96368 1.62572 1.04711 1.18561 1.35668 1.22542 1.04761 0.95426 0.85771 1.22847 0.77344 0.88456 0.86597 1.90614 1.55976 1.17609 1.83036 1.48366 1.60841 1.10136 1.14845 1.21966 1.02104 0.78226 1.04217 1.18676 0.94214 0.90630 0.82661 1.21706 0.98338 1.34048 1.03540 0.93072 1.25855 1.02647 0.95889 0.94913 1.70050 1.38440 1.39911 1.08469 0.85415 0.79309 0.77770 0.78623 1.19105 1.19038 1.21177 1.22590 0.95338 0.95120 0.97002 1.21731 0.84013 0.96211 0.97513 1.82891 0.90770 1.05505 1.66609 0.89914 0.88763 0.89294 0.82163 0.84327 0.86703 0.89322 0.94487 0.86935 0.85376 0.84241 0.90818 0.92041 0.88224 0.96100 0.98970 0.92448 0.96028 0.88237 0.90745 0.87465 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.09 -0.73 10.33 71.24 0.74 0.01 16 2 C -0.21 -3.26 6.28 24.68 0.15 -3.10 16 3 C -0.17 -3.24 10.00 21.08 0.21 -3.03 16 4 C -0.06 -1.39 10.02 21.72 0.22 -1.18 16 5 C -0.32 -8.58 6.15 24.07 0.15 -8.43 16 6 C 0.58 19.63 7.57 86.42 0.65 20.29 16 7 O -0.58 -24.23 16.39 -4.37 -0.07 -24.30 16 8 N -0.61 -17.62 3.00 -821.85 -2.47 -20.09 16 9 C 0.11 2.42 5.39 86.50 0.47 2.89 16 10 C 0.02 0.58 5.17 86.54 0.45 1.03 16 11 N -0.49 -12.29 4.83 -898.86 -4.34 -16.63 16 12 C 0.05 1.11 4.47 85.56 0.38 1.49 16 13 C 0.46 17.81 7.08 87.66 0.62 18.43 16 14 O -0.59 -29.45 11.23 -3.02 -0.03 -29.48 16 15 N -0.61 -24.84 2.86 -851.15 -2.43 -27.27 16 16 C 0.08 2.08 10.26 127.77 1.31 3.39 16 17 C 0.26 14.10 5.16 85.63 0.44 14.54 16 18 C -0.54 -31.45 9.39 25.60 0.24 -31.21 16 19 H 0.05 2.97 7.81 -2.91 -0.02 2.95 16 20 C 0.01 0.34 5.46 84.66 0.46 0.80 16 21 N -0.93 -57.42 13.29 21.45 0.28 -57.13 16 22 Si 0.96 46.26 29.54 68.60 2.03 48.29 16 23 H -0.27 -12.40 7.11 99.48 0.71 -11.69 16 24 H -0.27 -11.92 7.11 99.48 0.71 -11.22 16 25 H -0.29 -13.79 7.11 99.48 0.71 -13.08 16 26 C 0.03 0.85 5.18 86.38 0.45 1.30 16 27 C 0.13 3.47 6.62 86.35 0.57 4.04 16 28 S 0.27 4.72 18.48 -56.49 -1.04 3.67 16 29 H 0.08 0.49 8.11 -2.39 -0.02 0.47 16 30 H 0.09 0.56 8.14 -2.39 -0.02 0.54 16 31 H 0.09 0.64 8.14 -2.39 -0.02 0.62 16 32 H 0.16 2.23 8.06 -2.91 -0.02 2.21 16 33 H 0.14 3.68 8.06 -2.91 -0.02 3.65 16 34 H 0.12 1.75 8.14 -2.39 -0.02 1.73 16 35 H 0.09 1.85 3.89 -21.57 -0.08 1.76 16 36 H 0.04 1.38 5.54 -2.39 -0.01 1.37 16 37 H 0.11 2.20 8.10 -2.39 -0.02 2.18 16 38 H 0.13 2.46 7.18 -2.39 -0.02 2.44 16 39 H 0.14 2.35 8.13 -2.38 -0.02 2.33 16 40 H 0.07 1.60 8.14 -2.39 -0.02 1.58 16 41 H 0.06 1.83 8.07 -2.39 -0.02 1.81 16 42 H 0.10 1.87 6.35 -2.39 -0.02 1.86 16 43 H 0.02 1.15 8.07 -2.39 -0.02 1.13 16 44 H -0.01 -0.50 7.42 -2.39 -0.02 -0.51 16 45 H 0.27 15.44 8.31 -92.71 -0.77 14.67 16 46 H 0.02 0.90 5.92 -2.39 -0.01 0.89 16 47 H 0.10 2.56 8.08 -2.39 -0.02 2.54 16 48 H 0.07 2.32 7.09 -2.39 -0.02 2.31 16 49 H 0.11 2.19 8.14 -2.39 -0.02 2.17 16 Total: -1.00 -87.31 400.37 0.33 -86.98 By element: Atomic # 1 Polarization: 13.82 SS G_CDS: 0.89 Total: 14.71 kcal Atomic # 6 Polarization: 13.74 SS G_CDS: 7.51 Total: 21.25 kcal Atomic # 7 Polarization: -112.16 SS G_CDS: -8.95 Total: -121.12 kcal Atomic # 8 Polarization: -53.68 SS G_CDS: -0.11 Total: -53.79 kcal Atomic # 14 Polarization: 46.26 SS G_CDS: 2.03 Total: 48.29 kcal Atomic # 16 Polarization: 4.72 SS G_CDS: -1.04 Total: 3.67 kcal Total: -87.31 0.33 -86.98 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000055930137.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 53.523 kcal (2) G-P(sol) polarization free energy of solvation -87.310 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -33.787 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.325 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -86.985 kcal (6) G-S(sol) free energy of system = (1) + (5) -33.462 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.13 seconds