Wall clock time and date at job start Tue Mar 31 2020 05:41:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50702 * 1 3 3 C 1.41258 * 126.70167 * 2 1 4 4 C 1.36822 * 103.84582 * 180.12234 * 3 2 1 5 5 C 1.47511 * 126.94584 * 179.90210 * 4 3 2 6 6 O 1.21588 * 119.99985 * 359.71114 * 5 4 3 7 7 N 1.34784 * 120.00157 * 179.71089 * 5 4 3 8 8 C 1.46493 * 119.99864 * 179.72952 * 7 5 4 9 9 C 1.53118 * 109.52290 * 274.87264 * 8 7 5 10 10 C 1.53045 * 109.27701 * 182.50987 * 9 8 7 11 11 N 1.46841 * 109.58023 * 59.08042 * 10 9 8 12 12 C 1.46895 * 111.00104 * 174.19385 * 11 10 9 13 13 C 1.50693 * 109.47266 * 294.20629 * 12 11 10 14 14 O 1.21286 * 120.00132 * 0.02562 * 13 12 11 15 15 N 1.34779 * 119.99970 * 179.97438 * 13 12 11 16 16 C 1.46496 * 120.00210 * 0.02562 * 15 13 12 17 17 C 1.46499 * 119.99795 * 180.02562 * 15 13 12 18 18 C 1.50700 * 109.47331 * 89.99934 * 17 15 13 19 19 H 1.07996 * 120.00061 * 359.97438 * 18 17 15 20 20 C 1.37878 * 120.00081 * 179.97438 * 18 17 15 21 21 N 1.31514 * 120.00248 * 0.02562 * 20 18 17 22 22 Si 1.86799 * 120.00238 * 179.97438 * 20 18 17 23 23 H 1.48506 * 109.47127 * 0.02562 * 22 20 18 24 24 H 1.48504 * 109.46964 * 120.00374 * 22 20 18 25 25 H 1.48491 * 109.47547 * 240.00442 * 22 20 18 26 26 C 1.46848 * 111.19542 * 298.29324 * 11 10 9 27 27 C 1.53040 * 109.52353 * 61.74359 * 26 11 10 28 28 O 1.34637 * 106.11099 * 359.64427 * 4 3 2 29 29 N 1.20888 * 111.47057 * 0.24023 * 28 4 3 30 30 H 1.08999 * 109.47395 * 270.25598 * 1 2 3 31 31 H 1.08995 * 109.47302 * 30.26108 * 1 2 3 32 32 H 1.09003 * 109.46701 * 150.25789 * 1 2 3 33 33 H 1.08003 * 128.07845 * 0.02562 * 3 2 1 34 34 H 0.97000 * 119.99339 * 0.02562 * 7 5 4 35 35 H 1.09004 * 109.52808 * 34.99911 * 8 7 5 36 36 H 1.09004 * 109.50089 * 302.38459 * 9 8 7 37 37 H 1.09003 * 109.50816 * 62.49804 * 9 8 7 38 38 H 1.09009 * 109.40611 * 299.06212 * 10 9 8 39 39 H 1.09001 * 109.45326 * 179.12987 * 10 9 8 40 40 H 1.09001 * 109.47344 * 54.21027 * 12 11 10 41 41 H 1.09008 * 109.46965 * 174.20933 * 12 11 10 42 42 H 1.09007 * 109.47021 * 90.00015 * 16 15 13 43 43 H 1.09001 * 109.47582 * 210.00049 * 16 15 13 44 44 H 1.09002 * 109.47337 * 330.00468 * 16 15 13 45 45 H 1.08999 * 109.46905 * 209.99700 * 17 15 13 46 46 H 1.09005 * 109.47408 * 330.00010 * 17 15 13 47 47 H 0.97000 * 120.00589 * 180.02562 * 21 20 18 48 48 H 1.08995 * 109.46632 * 301.72236 * 26 11 10 49 49 H 1.09003 * 109.45025 * 181.75040 * 26 11 10 50 50 H 1.08998 * 109.50121 * 180.87889 * 27 26 11 51 51 H 1.08994 * 109.50710 * 60.75879 * 27 26 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3513 1.1326 0.0000 4 6 3.6120 0.6011 -0.0028 5 6 4.8870 1.3431 -0.0061 6 8 4.8827 2.5590 -0.0117 7 7 6.0566 0.6733 -0.0028 8 6 7.3227 1.4101 -0.0120 9 6 7.7001 1.7609 -1.4539 10 6 9.0536 2.4751 -1.4624 11 7 10.0741 1.6029 -0.8674 12 6 11.4107 2.2009 -0.9839 13 6 11.8013 2.2788 -2.4372 14 8 11.0408 1.8763 -3.2920 15 7 12.9953 2.7968 -2.7873 16 6 13.9137 3.2836 -1.7550 17 6 13.3747 2.8731 -4.2003 18 6 12.9188 4.1907 -4.7724 19 1 12.3982 4.9000 -4.1463 20 6 13.1665 4.4904 -6.0952 21 7 13.8000 3.6264 -6.8579 22 14 12.6008 6.1233 -6.8047 23 1 11.9163 6.9114 -5.7484 24 1 13.7771 6.8806 -7.3028 25 1 11.6599 5.8762 -7.9266 26 6 9.7565 1.2924 0.5323 27 6 8.4249 0.5413 0.6002 28 8 3.4539 -0.7359 0.0038 29 7 2.2848 -1.0432 0.0052 30 1 -0.3634 0.0046 1.0276 31 1 -0.3633 0.8876 -0.5179 32 1 -0.3633 -0.8923 -0.5098 33 1 2.0677 2.1747 0.0004 34 1 6.0599 -0.2967 0.0014 35 1 7.2155 2.3259 0.5695 36 1 7.7680 0.8474 -2.0447 37 1 6.9396 2.4150 -1.8804 38 1 8.9808 3.3961 -0.8838 39 1 9.3324 2.7124 -2.4891 40 1 11.3987 3.2036 -0.5566 41 1 12.1322 1.5855 -0.4463 42 1 14.5653 2.4702 -1.4356 43 1 14.5179 4.0956 -2.1596 44 1 13.3413 3.6470 -0.9015 45 1 14.4580 2.7933 -4.2904 46 1 12.9033 2.0568 -4.7477 47 1 13.9746 3.8374 -7.7884 48 1 9.6805 2.2187 1.1016 49 1 10.5461 0.6706 0.9543 50 1 8.1819 0.3247 1.6405 51 1 8.5045 -0.3919 0.0427 RHF calculation, no. of doubly occupied orbitals= 69 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000058143040.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:41:29 Heat of formation + Delta-G solvation = 2.456177 kcal Electronic energy + Delta-G solvation = -32499.968229 eV Core-core repulsion = 28017.119854 eV Total energy + Delta-G solvation = -4482.848375 eV No. of doubly occupied orbitals = 69 Molecular weight (most abundant/longest-lived isotopes) = 364.194 amu Computer time = 2.42 seconds Orbital eigenvalues (eV) -45.43602 -40.40323 -39.37735 -38.03694 -35.58959 -35.14578 -34.65569 -32.85479 -32.58106 -31.56849 -30.91215 -29.18629 -28.43376 -26.90434 -25.62415 -24.69328 -23.40675 -23.33418 -22.85119 -21.99212 -20.61382 -20.00651 -18.66793 -18.40041 -18.21893 -16.87014 -16.56550 -16.50504 -16.29101 -15.80866 -15.44580 -15.09977 -15.04448 -14.69432 -14.43427 -14.25942 -13.99973 -13.88852 -13.81304 -13.64980 -13.50126 -13.24832 -13.17757 -12.78177 -12.50002 -12.19783 -12.08191 -11.88615 -11.79559 -11.73312 -11.42506 -11.29301 -11.18253 -10.95718 -10.78846 -10.74206 -10.59545 -10.56461 -10.52194 -10.16533 -10.13920 -9.59799 -9.41368 -8.86288 -8.43338 -8.15051 -7.60604 -6.03791 -4.08550 0.38373 1.59111 2.17651 2.60543 2.80749 3.29816 3.37257 3.40154 3.47471 3.60265 3.63433 4.00463 4.22961 4.41173 4.45869 4.54250 4.59687 4.72801 4.85335 4.87448 4.96801 5.06531 5.13250 5.18340 5.24235 5.26089 5.30412 5.34873 5.42879 5.46475 5.48460 5.55882 5.58393 5.66731 5.73903 5.82624 5.92456 5.94859 5.99572 6.20043 6.29917 6.35201 6.90766 6.96400 7.13092 7.19032 7.46981 7.55772 7.56830 7.68621 7.93041 8.24361 8.44958 8.91924 9.14814 9.56790 11.04159 Molecular weight = 364.19amu Principal moments of inertia in cm(-1) A = 0.013373 B = 0.001801 C = 0.001657 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2093.191135 B =15539.684844 C =16893.955704 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.077 4.077 2 C 0.010 3.990 3 C -0.151 4.151 4 C -0.081 4.081 5 C 0.605 3.395 6 O -0.509 6.509 7 N -0.707 5.707 8 C 0.142 3.858 9 C -0.122 4.122 10 C 0.053 3.947 11 N -0.520 5.520 12 C 0.038 3.962 13 C 0.505 3.495 14 O -0.523 6.523 15 N -0.605 5.605 16 C 0.084 3.916 17 C 0.246 3.754 18 C -0.525 4.525 19 H 0.057 0.943 20 C 0.061 3.939 21 N -0.894 5.894 22 Si 0.897 3.103 23 H -0.274 1.274 24 H -0.284 1.284 25 H -0.283 1.283 26 C 0.060 3.940 27 C -0.121 4.121 28 O 0.117 5.883 29 N -0.345 5.345 30 H 0.083 0.917 31 H 0.085 0.915 32 H 0.079 0.921 33 H 0.184 0.816 34 H 0.407 0.593 35 H 0.090 0.910 36 H 0.078 0.922 37 H 0.071 0.929 38 H 0.028 0.972 39 H 0.107 0.893 40 H 0.057 0.943 41 H 0.096 0.904 42 H 0.044 0.956 43 H 0.073 0.927 44 H 0.054 0.946 45 H 0.031 0.969 46 H 0.044 0.956 47 H 0.262 0.738 48 H 0.035 0.965 49 H 0.081 0.919 50 H 0.074 0.926 51 H 0.082 0.918 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.114 -7.311 20.776 28.517 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.134 4.134 2 C -0.148 4.148 3 C -0.173 4.173 4 C -0.148 4.148 5 C 0.388 3.612 6 O -0.384 6.384 7 N -0.358 5.358 8 C 0.039 3.961 9 C -0.161 4.161 10 C -0.075 4.075 11 N -0.245 5.245 12 C -0.093 4.093 13 C 0.290 3.710 14 O -0.400 6.400 15 N -0.338 5.338 16 C -0.061 4.061 17 C 0.127 3.873 18 C -0.564 4.564 19 H 0.075 0.925 20 C -0.141 4.141 21 N -0.533 5.533 22 Si 0.725 3.275 23 H -0.198 1.198 24 H -0.210 1.210 25 H -0.209 1.209 26 C -0.069 4.069 27 C -0.160 4.160 28 O 0.044 5.956 29 N -0.047 5.047 30 H 0.102 0.898 31 H 0.104 0.896 32 H 0.098 0.902 33 H 0.201 0.799 34 H 0.243 0.757 35 H 0.108 0.892 36 H 0.097 0.903 37 H 0.090 0.910 38 H 0.046 0.954 39 H 0.125 0.875 40 H 0.075 0.925 41 H 0.115 0.885 42 H 0.063 0.937 43 H 0.092 0.908 44 H 0.073 0.927 45 H 0.049 0.951 46 H 0.062 0.938 47 H 0.072 0.928 48 H 0.053 0.947 49 H 0.099 0.901 50 H 0.092 0.908 51 H 0.100 0.900 Dipole moment (debyes) X Y Z Total from point charges -18.662 -8.410 19.865 28.524 hybrid contribution -0.215 2.069 0.006 2.080 sum -18.877 -6.341 19.871 28.132 Atomic orbital electron populations 1.20224 0.85158 1.04290 1.03757 1.23688 0.99491 0.88267 1.03328 1.22895 0.89957 1.01827 1.02661 1.24281 0.97418 0.84034 1.09023 1.16525 0.81100 0.86228 0.77320 1.90902 1.85994 1.11806 1.49740 1.45999 1.05304 1.10889 1.73561 1.21265 0.81178 0.95612 0.98064 1.21946 0.96682 1.02135 0.95369 1.22243 0.90179 0.92498 1.02564 1.61576 1.01153 1.46031 1.15774 1.22017 0.91710 0.99067 0.96483 1.20130 0.82131 0.78797 0.89919 1.90639 1.50028 1.47600 1.51693 1.48164 1.16320 1.59803 1.09558 1.21628 0.93913 0.99316 0.91208 1.19272 0.95692 0.97999 0.74339 1.21468 1.37224 1.02086 0.95635 0.92498 1.24937 0.95142 0.97256 0.96801 1.69940 1.41250 1.35091 1.07041 0.86460 0.78390 0.83531 0.79136 1.19842 1.20995 1.20859 1.22021 0.96796 0.98966 0.89101 1.21847 0.93440 0.99654 1.01013 1.84975 1.21522 1.22102 1.66997 1.73746 0.89232 1.24299 1.17381 0.89819 0.89574 0.90173 0.79869 0.75728 0.89218 0.90298 0.90999 0.95375 0.87485 0.92483 0.88544 0.93749 0.90787 0.92703 0.95089 0.93784 0.92784 0.94694 0.90063 0.90772 0.89971 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -0.36 10.47 36.01 0.38 0.02 16 2 C 0.01 0.08 7.31 -82.17 -0.60 -0.52 16 3 C -0.15 -1.27 10.91 -38.95 -0.43 -1.69 16 4 C -0.08 -0.77 7.29 -36.32 -0.26 -1.03 16 5 C 0.61 6.39 7.79 -12.48 -0.10 6.30 16 6 O -0.51 -6.97 16.58 5.29 0.09 -6.88 16 7 N -0.71 -6.19 5.08 -54.74 -0.28 -6.47 16 8 C 0.14 1.41 2.52 -67.81 -0.17 1.24 16 9 C -0.12 -1.55 5.68 -26.65 -0.15 -1.70 16 10 C 0.05 0.78 5.10 -3.83 -0.02 0.76 16 11 N -0.52 -7.14 4.40 -236.11 -1.04 -8.18 16 12 C 0.04 0.55 4.00 -4.98 -0.02 0.53 16 13 C 0.50 10.20 7.35 -10.99 -0.08 10.12 16 14 O -0.52 -12.81 13.90 5.55 0.08 -12.73 16 15 N -0.61 -12.59 2.86 -182.95 -0.52 -13.11 16 16 C 0.08 1.27 10.24 59.84 0.61 1.89 16 17 C 0.25 6.41 5.16 -5.19 -0.03 6.38 16 18 C -0.53 -14.85 9.39 -34.44 -0.32 -15.17 16 19 H 0.06 1.61 7.81 -52.49 -0.41 1.20 16 20 C 0.06 1.73 5.46 -17.82 -0.10 1.64 16 21 N -0.89 -26.61 13.29 55.43 0.74 -25.87 16 22 Si 0.90 21.93 29.54 -169.99 -5.02 16.90 16 23 H -0.27 -6.60 7.11 56.52 0.40 -6.20 16 24 H -0.28 -6.76 7.11 56.52 0.40 -6.36 16 25 H -0.28 -6.92 7.11 56.52 0.40 -6.52 16 26 C 0.06 0.58 5.46 -3.83 -0.02 0.56 16 27 C -0.12 -1.00 5.57 -26.65 -0.15 -1.15 16 28 O 0.12 1.11 11.04 15.56 0.17 1.28 16 29 N -0.34 -3.45 12.04 33.52 0.40 -3.05 16 30 H 0.08 0.29 8.14 -51.93 -0.42 -0.13 16 31 H 0.09 0.26 8.14 -51.93 -0.42 -0.16 16 32 H 0.08 0.36 8.14 -51.93 -0.42 -0.07 16 33 H 0.18 1.23 8.06 -52.48 -0.42 0.80 16 34 H 0.41 2.66 8.43 -40.82 -0.34 2.32 16 35 H 0.09 0.98 7.58 -51.93 -0.39 0.59 16 36 H 0.08 1.06 8.14 -51.93 -0.42 0.64 16 37 H 0.07 0.97 8.14 -51.93 -0.42 0.55 16 38 H 0.03 0.39 8.14 -51.92 -0.42 -0.03 16 39 H 0.11 2.02 5.78 -51.93 -0.30 1.72 16 40 H 0.06 0.74 7.38 -51.93 -0.38 0.36 16 41 H 0.10 1.14 7.95 -51.92 -0.41 0.73 16 42 H 0.04 0.58 8.14 -51.93 -0.42 0.15 16 43 H 0.07 1.18 8.07 -51.93 -0.42 0.76 16 44 H 0.05 0.67 6.44 -51.93 -0.33 0.34 16 45 H 0.03 0.82 8.07 -51.93 -0.42 0.40 16 46 H 0.04 1.30 7.42 -51.93 -0.39 0.91 16 47 H 0.26 7.36 8.31 -40.82 -0.34 7.02 16 48 H 0.03 0.32 8.14 -51.93 -0.42 -0.10 16 49 H 0.08 0.68 8.02 -51.93 -0.42 0.26 16 50 H 0.07 0.47 8.14 -51.93 -0.42 0.04 16 51 H 0.08 0.69 8.14 -51.93 -0.42 0.27 16 LS Contribution 420.49 15.07 6.34 6.34 Total: -1.00 -35.62 420.49 -8.51 -44.13 By element: Atomic # 1 Polarization: 7.48 SS G_CDS: -8.00 Total: -0.52 kcal Atomic # 6 Polarization: 9.61 SS G_CDS: -1.46 Total: 8.16 kcal Atomic # 7 Polarization: -55.98 SS G_CDS: -0.70 Total: -56.68 kcal Atomic # 8 Polarization: -18.66 SS G_CDS: 0.34 Total: -18.33 kcal Atomic # 14 Polarization: 21.93 SS G_CDS: -5.02 Total: 16.90 kcal Total LS contribution 6.34 Total: 6.34 kcal Total: -35.62 -8.51 -44.13 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000058143040.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 46.587 kcal (2) G-P(sol) polarization free energy of solvation -35.623 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 10.964 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.507 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.131 kcal (6) G-S(sol) free energy of system = (1) + (5) 2.456 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 2.42 seconds