Wall clock time and date at job start Tue Mar 31 2020 05:41:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50702 * 1 3 3 C 1.41258 * 126.70167 * 2 1 4 4 C 1.36822 * 103.84582 * 180.12234 * 3 2 1 5 5 C 1.47511 * 126.94584 * 179.90210 * 4 3 2 6 6 O 1.21588 * 119.99985 * 359.71114 * 5 4 3 7 7 N 1.34784 * 120.00157 * 179.71089 * 5 4 3 8 8 C 1.46493 * 119.99864 * 179.72952 * 7 5 4 9 9 C 1.53118 * 109.52290 * 274.87264 * 8 7 5 10 10 C 1.53045 * 109.27701 * 182.50987 * 9 8 7 11 11 N 1.46841 * 109.58023 * 59.08042 * 10 9 8 12 12 C 1.46895 * 111.00104 * 174.19385 * 11 10 9 13 13 C 1.50693 * 109.47266 * 294.20629 * 12 11 10 14 14 O 1.21286 * 120.00132 * 0.02562 * 13 12 11 15 15 N 1.34779 * 119.99970 * 179.97438 * 13 12 11 16 16 C 1.46496 * 120.00210 * 0.02562 * 15 13 12 17 17 C 1.46499 * 119.99795 * 180.02562 * 15 13 12 18 18 C 1.50700 * 109.47331 * 89.99934 * 17 15 13 19 19 H 1.07996 * 120.00061 * 359.97438 * 18 17 15 20 20 C 1.37878 * 120.00081 * 179.97438 * 18 17 15 21 21 N 1.31514 * 120.00248 * 0.02562 * 20 18 17 22 22 Si 1.86799 * 120.00238 * 179.97438 * 20 18 17 23 23 H 1.48506 * 109.47127 * 0.02562 * 22 20 18 24 24 H 1.48504 * 109.46964 * 120.00374 * 22 20 18 25 25 H 1.48491 * 109.47547 * 240.00442 * 22 20 18 26 26 C 1.46848 * 111.19542 * 298.29324 * 11 10 9 27 27 C 1.53040 * 109.52353 * 61.74359 * 26 11 10 28 28 O 1.34637 * 106.11099 * 359.64427 * 4 3 2 29 29 N 1.20888 * 111.47057 * 0.24023 * 28 4 3 30 30 H 1.08999 * 109.47395 * 270.25598 * 1 2 3 31 31 H 1.08995 * 109.47302 * 30.26108 * 1 2 3 32 32 H 1.09003 * 109.46701 * 150.25789 * 1 2 3 33 33 H 1.08003 * 128.07845 * 0.02562 * 3 2 1 34 34 H 0.97000 * 119.99339 * 0.02562 * 7 5 4 35 35 H 1.09004 * 109.52808 * 34.99911 * 8 7 5 36 36 H 1.09004 * 109.50089 * 302.38459 * 9 8 7 37 37 H 1.09003 * 109.50816 * 62.49804 * 9 8 7 38 38 H 1.09009 * 109.40611 * 299.06212 * 10 9 8 39 39 H 1.09001 * 109.45326 * 179.12987 * 10 9 8 40 40 H 1.09001 * 109.47344 * 54.21027 * 12 11 10 41 41 H 1.09008 * 109.46965 * 174.20933 * 12 11 10 42 42 H 1.09007 * 109.47021 * 90.00015 * 16 15 13 43 43 H 1.09001 * 109.47582 * 210.00049 * 16 15 13 44 44 H 1.09002 * 109.47337 * 330.00468 * 16 15 13 45 45 H 1.08999 * 109.46905 * 209.99700 * 17 15 13 46 46 H 1.09005 * 109.47408 * 330.00010 * 17 15 13 47 47 H 0.97000 * 120.00589 * 180.02562 * 21 20 18 48 48 H 1.08995 * 109.46632 * 301.72236 * 26 11 10 49 49 H 1.09003 * 109.45025 * 181.75040 * 26 11 10 50 50 H 1.08998 * 109.50121 * 180.87889 * 27 26 11 51 51 H 1.08994 * 109.50710 * 60.75879 * 27 26 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3513 1.1326 0.0000 4 6 3.6120 0.6011 -0.0028 5 6 4.8870 1.3431 -0.0061 6 8 4.8827 2.5590 -0.0117 7 7 6.0566 0.6733 -0.0028 8 6 7.3227 1.4101 -0.0120 9 6 7.7001 1.7609 -1.4539 10 6 9.0536 2.4751 -1.4624 11 7 10.0741 1.6029 -0.8674 12 6 11.4107 2.2009 -0.9839 13 6 11.8013 2.2788 -2.4372 14 8 11.0408 1.8763 -3.2920 15 7 12.9953 2.7968 -2.7873 16 6 13.9137 3.2836 -1.7550 17 6 13.3747 2.8731 -4.2003 18 6 12.9188 4.1907 -4.7724 19 1 12.3982 4.9000 -4.1463 20 6 13.1665 4.4904 -6.0952 21 7 13.8000 3.6264 -6.8579 22 14 12.6008 6.1233 -6.8047 23 1 11.9163 6.9114 -5.7484 24 1 13.7771 6.8806 -7.3028 25 1 11.6599 5.8762 -7.9266 26 6 9.7565 1.2924 0.5323 27 6 8.4249 0.5413 0.6002 28 8 3.4539 -0.7359 0.0038 29 7 2.2848 -1.0432 0.0052 30 1 -0.3634 0.0046 1.0276 31 1 -0.3633 0.8876 -0.5179 32 1 -0.3633 -0.8923 -0.5098 33 1 2.0677 2.1747 0.0004 34 1 6.0599 -0.2967 0.0014 35 1 7.2155 2.3259 0.5695 36 1 7.7680 0.8474 -2.0447 37 1 6.9396 2.4150 -1.8804 38 1 8.9808 3.3961 -0.8838 39 1 9.3324 2.7124 -2.4891 40 1 11.3987 3.2036 -0.5566 41 1 12.1322 1.5855 -0.4463 42 1 14.5653 2.4702 -1.4356 43 1 14.5179 4.0956 -2.1596 44 1 13.3413 3.6470 -0.9015 45 1 14.4580 2.7933 -4.2904 46 1 12.9033 2.0568 -4.7477 47 1 13.9746 3.8374 -7.7884 48 1 9.6805 2.2187 1.1016 49 1 10.5461 0.6706 0.9543 50 1 8.1819 0.3247 1.6405 51 1 8.5045 -0.3919 0.0427 RHF calculation, no. of doubly occupied orbitals= 69 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000058143040.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:41:24 Heat of formation + Delta-G solvation = -24.123491 kcal Electronic energy + Delta-G solvation = -32501.120810 eV Core-core repulsion = 28017.119854 eV Total energy + Delta-G solvation = -4484.000956 eV No. of doubly occupied orbitals = 69 Molecular weight (most abundant/longest-lived isotopes) = 364.194 amu Computer time = 5.29 seconds Orbital eigenvalues (eV) -46.11340 -41.33414 -40.69259 -39.20600 -36.64016 -36.23682 -35.81006 -34.72581 -33.61910 -32.46613 -31.83087 -30.19299 -29.64771 -28.19174 -27.12685 -25.75793 -24.54468 -24.23572 -23.98052 -23.15758 -21.43789 -20.81788 -19.95637 -19.39140 -18.91847 -18.68765 -17.90964 -17.56051 -17.25301 -17.17195 -16.63271 -16.54996 -16.06937 -15.95308 -15.63106 -15.34196 -15.06017 -14.88691 -14.48448 -14.37358 -14.27733 -14.23048 -14.15927 -13.79247 -13.77844 -13.71085 -13.42454 -13.12299 -13.06428 -12.93258 -12.73967 -12.57331 -12.49434 -12.32911 -12.22196 -12.15605 -11.87243 -11.67001 -11.64894 -11.42161 -11.15832 -10.90152 -10.65423 -10.49436 -10.20747 -9.35151 -9.21033 -8.22497 -6.37336 -0.34958 0.95701 1.34400 1.37079 1.42583 1.48455 1.80376 1.92441 2.08181 2.27998 2.41632 3.02213 3.04308 3.06598 3.37042 3.67539 3.76717 3.83155 3.87774 3.94788 4.04871 4.23198 4.28739 4.31183 4.32546 4.45356 4.51944 4.52777 4.60993 4.66981 4.71127 4.74281 4.77689 4.78354 4.87511 4.98539 4.99058 5.01534 5.06893 5.13768 5.16500 5.22796 5.25434 5.36629 5.57991 5.85949 5.96785 6.07451 6.19642 6.21282 6.71673 6.82036 6.87146 6.98418 7.29494 7.58875 8.84237 Molecular weight = 364.19amu Principal moments of inertia in cm(-1) A = 0.013373 B = 0.001801 C = 0.001657 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2093.191135 B =15539.684844 C =16893.955704 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.078 4.078 2 C 0.013 3.987 3 C -0.150 4.150 4 C -0.092 4.092 5 C 0.608 3.392 6 O -0.544 6.544 7 N -0.695 5.695 8 C 0.151 3.849 9 C -0.116 4.116 10 C 0.060 3.940 11 N -0.538 5.538 12 C 0.053 3.947 13 C 0.492 3.508 14 O -0.579 6.579 15 N -0.615 5.615 16 C 0.079 3.921 17 C 0.261 3.739 18 C -0.540 4.540 19 H 0.052 0.948 20 C 0.007 3.993 21 N -0.928 5.928 22 Si 0.966 3.034 23 H -0.268 1.268 24 H -0.268 1.268 25 H -0.283 1.283 26 C 0.058 3.942 27 C -0.114 4.114 28 O 0.112 5.888 29 N -0.368 5.368 30 H 0.099 0.901 31 H 0.104 0.896 32 H 0.082 0.918 33 H 0.199 0.801 34 H 0.420 0.580 35 H 0.085 0.915 36 H 0.065 0.935 37 H 0.054 0.946 38 H 0.035 0.965 39 H 0.057 0.943 40 H 0.079 0.921 41 H 0.133 0.867 42 H 0.072 0.928 43 H 0.063 0.937 44 H 0.093 0.907 45 H 0.022 0.978 46 H -0.004 1.004 47 H 0.267 0.733 48 H 0.049 0.951 49 H 0.106 0.894 50 H 0.105 0.895 51 H 0.082 0.918 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.882 -6.905 23.829 31.177 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.135 4.135 2 C -0.145 4.145 3 C -0.172 4.172 4 C -0.158 4.158 5 C 0.392 3.608 6 O -0.422 6.422 7 N -0.345 5.345 8 C 0.047 3.953 9 C -0.155 4.155 10 C -0.069 4.069 11 N -0.263 5.263 12 C -0.077 4.077 13 C 0.280 3.720 14 O -0.459 6.459 15 N -0.347 5.347 16 C -0.063 4.063 17 C 0.139 3.861 18 C -0.579 4.579 19 H 0.070 0.930 20 C -0.192 4.192 21 N -0.568 5.568 22 Si 0.790 3.210 23 H -0.192 1.192 24 H -0.193 1.193 25 H -0.209 1.209 26 C -0.069 4.069 27 C -0.152 4.152 28 O 0.041 5.959 29 N -0.072 5.072 30 H 0.117 0.883 31 H 0.123 0.877 32 H 0.100 0.900 33 H 0.216 0.784 34 H 0.257 0.743 35 H 0.103 0.897 36 H 0.084 0.916 37 H 0.073 0.927 38 H 0.053 0.947 39 H 0.075 0.925 40 H 0.097 0.903 41 H 0.151 0.849 42 H 0.091 0.909 43 H 0.081 0.919 44 H 0.111 0.889 45 H 0.040 0.960 46 H 0.014 0.986 47 H 0.076 0.924 48 H 0.067 0.933 49 H 0.124 0.876 50 H 0.124 0.876 51 H 0.100 0.900 Dipole moment (debyes) X Y Z Total from point charges -19.392 -8.031 22.978 31.121 hybrid contribution -0.002 1.889 -0.955 2.117 sum -19.394 -6.142 22.023 29.981 Atomic orbital electron populations 1.20415 0.82735 1.05321 1.05042 1.24246 1.00972 0.87535 1.01747 1.23213 0.89631 1.02708 1.01618 1.24159 0.97325 0.84303 1.10026 1.16626 0.81712 0.85843 0.76640 1.90882 1.86551 1.13258 1.51554 1.45894 1.04598 1.11487 1.72545 1.21126 0.82178 0.96233 0.95789 1.21829 0.95362 1.00868 0.97419 1.21999 0.91403 0.93490 1.00003 1.61518 1.00457 1.45625 1.18731 1.21961 0.92845 1.01233 0.91711 1.21315 0.81002 0.77242 0.92403 1.90616 1.51527 1.49774 1.53978 1.48199 1.17799 1.60252 1.08473 1.21926 0.93808 1.00031 0.90582 1.18697 0.94336 0.95430 0.77599 1.21738 1.37195 1.02769 0.96168 0.93017 1.25850 0.95115 1.01044 0.97214 1.70055 1.42189 1.37070 1.07471 0.85396 0.78295 0.79103 0.78179 1.19215 1.19314 1.20864 1.22201 0.98137 1.00160 0.86433 1.21847 0.91887 0.98819 1.02623 1.84956 1.21566 1.21923 1.67437 1.73735 0.89576 1.25239 1.18620 0.88300 0.87723 0.89956 0.78395 0.74271 0.89687 0.91626 0.92713 0.94692 0.92477 0.90291 0.84892 0.90927 0.91857 0.88858 0.95999 0.98578 0.92447 0.93320 0.87614 0.87646 0.89954 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -0.57 10.47 71.24 0.75 0.18 16 2 C 0.01 0.19 7.31 43.55 0.32 0.51 16 3 C -0.15 -2.36 10.91 22.68 0.25 -2.11 16 4 C -0.09 -1.69 7.29 24.38 0.18 -1.52 16 5 C 0.61 12.63 7.79 86.69 0.67 13.31 16 6 O -0.54 -14.92 16.58 -3.99 -0.07 -14.99 16 7 N -0.69 -11.53 5.08 -445.34 -2.26 -13.79 16 8 C 0.15 2.81 2.52 45.07 0.11 2.92 16 9 C -0.12 -3.03 5.68 30.65 0.17 -2.85 16 10 C 0.06 1.79 5.10 86.33 0.44 2.23 16 11 N -0.54 -13.96 4.40 -900.92 -3.96 -17.93 16 12 C 0.05 1.39 4.00 85.56 0.34 1.74 16 13 C 0.49 20.14 7.35 87.65 0.64 20.78 16 14 O -0.58 -30.00 13.90 -3.05 -0.04 -30.04 16 15 N -0.61 -25.83 2.86 -851.13 -2.43 -28.26 16 16 C 0.08 2.24 10.24 127.77 1.31 3.55 16 17 C 0.26 14.25 5.16 85.63 0.44 14.69 16 18 C -0.54 -31.55 9.39 25.60 0.24 -31.31 16 19 H 0.05 3.00 7.81 -2.91 -0.02 2.97 16 20 C 0.01 0.39 5.46 84.65 0.46 0.85 16 21 N -0.93 -56.89 13.29 21.45 0.28 -56.60 16 22 Si 0.97 45.69 29.54 68.60 2.03 47.71 16 23 H -0.27 -12.30 7.11 99.48 0.71 -11.59 16 24 H -0.27 -11.95 7.11 99.48 0.71 -11.24 16 25 H -0.28 -13.31 7.11 99.48 0.71 -12.61 16 26 C 0.06 0.91 5.46 86.33 0.47 1.38 16 27 C -0.11 -1.53 5.57 30.65 0.17 -1.35 16 28 O 0.11 2.07 11.04 65.88 0.73 2.80 16 29 N -0.37 -7.09 12.04 -48.88 -0.59 -7.68 16 30 H 0.10 0.45 8.14 -2.39 -0.02 0.43 16 31 H 0.10 0.38 8.14 -2.39 -0.02 0.36 16 32 H 0.08 0.59 8.14 -2.39 -0.02 0.57 16 33 H 0.20 2.39 8.06 -2.91 -0.02 2.37 16 34 H 0.42 4.95 8.43 -92.71 -0.78 4.17 16 35 H 0.09 1.73 7.58 -2.38 -0.02 1.72 16 36 H 0.06 1.86 8.14 -2.38 -0.02 1.84 16 37 H 0.05 1.58 8.14 -2.39 -0.02 1.56 16 38 H 0.03 0.97 8.14 -2.38 -0.02 0.95 16 39 H 0.06 2.31 5.78 -2.39 -0.01 2.29 16 40 H 0.08 1.77 7.38 -2.39 -0.02 1.75 16 41 H 0.13 2.55 7.95 -2.38 -0.02 2.54 16 42 H 0.07 1.67 8.14 -2.38 -0.02 1.65 16 43 H 0.06 1.94 8.07 -2.39 -0.02 1.92 16 44 H 0.09 1.93 6.44 -2.39 -0.02 1.92 16 45 H 0.02 1.21 8.07 -2.39 -0.02 1.19 16 46 H 0.00 -0.25 7.42 -2.38 -0.02 -0.27 16 47 H 0.27 15.28 8.31 -92.71 -0.77 14.51 16 48 H 0.05 0.68 8.14 -2.39 -0.02 0.66 16 49 H 0.11 1.22 8.02 -2.39 -0.02 1.20 16 50 H 0.11 0.85 8.14 -2.39 -0.02 0.83 16 51 H 0.08 1.16 8.14 -2.39 -0.02 1.14 16 Total: -1.00 -83.77 420.49 0.83 -82.94 By element: Atomic # 1 Polarization: 12.68 SS G_CDS: 0.17 Total: 12.85 kcal Atomic # 6 Polarization: 16.01 SS G_CDS: 6.97 Total: 22.99 kcal Atomic # 7 Polarization: -115.30 SS G_CDS: -8.96 Total: -124.26 kcal Atomic # 8 Polarization: -42.85 SS G_CDS: 0.62 Total: -42.23 kcal Atomic # 14 Polarization: 45.69 SS G_CDS: 2.03 Total: 47.71 kcal Total: -83.77 0.83 -82.94 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000058143040.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 58.821 kcal (2) G-P(sol) polarization free energy of solvation -83.774 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -24.953 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.829 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -82.945 kcal (6) G-S(sol) free energy of system = (1) + (5) -24.123 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 5.29 seconds