Wall clock time and date at job start Tue Mar 31 2020 06:12:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31645 * 1 3 3 Si 1.86796 * 119.99559 * 2 1 4 4 H 1.48501 * 109.47169 * 269.99265 * 3 2 1 5 5 H 1.48494 * 109.47524 * 29.99672 * 3 2 1 6 6 H 1.48507 * 109.47154 * 149.99874 * 3 2 1 7 7 C 1.38648 * 120.00091 * 179.97438 * 2 1 3 8 8 H 1.07998 * 120.00378 * 0.02562 * 7 2 1 9 9 S 1.76206 * 119.99721 * 180.02562 * 7 2 1 10 10 C 1.76204 * 99.99658 * 180.02562 * 9 7 2 11 11 N 1.31410 * 125.83027 * 359.97438 * 10 9 7 12 12 C 1.34048 * 109.34131 * 180.02562 * 11 10 9 13 13 C 1.34730 * 108.41932 * 359.73173 * 12 11 10 14 14 N 1.36518 * 125.82611 * 180.02562 * 10 9 7 15 15 C 1.40186 * 126.53868 * 359.97438 * 14 10 9 16 16 C 1.38962 * 119.99299 * 310.02504 * 15 14 10 17 17 C 1.38215 * 120.22956 * 179.97438 * 16 15 14 18 18 C 1.38019 * 120.21973 * 359.74312 * 17 16 15 19 19 C 1.39598 * 119.98308 * 0.51557 * 18 17 16 20 20 C 1.47827 * 120.11355 * 179.76716 * 19 18 17 21 21 O 1.21555 * 120.00499 * 179.71796 * 20 19 18 22 22 N 1.34783 * 120.00067 * 359.71923 * 20 19 18 23 23 C 1.39841 * 120.00174 * 185.28970 * 22 20 19 24 24 C 1.38891 * 120.07395 * 33.31472 * 23 22 20 25 25 C 1.38108 * 119.92757 * 179.72559 * 24 23 22 26 26 C 1.38285 * 120.07277 * 0.25261 * 25 24 23 27 27 C 1.38285 * 120.14589 * 359.97438 * 26 25 24 28 28 C 1.38110 * 120.07142 * 0.02562 * 27 26 25 29 29 C 1.38558 * 119.99527 * 129.99955 * 15 14 10 30 30 H 0.96993 * 120.00897 * 0.02562 * 1 2 3 31 31 H 1.08001 * 125.79365 * 180.02562 * 12 11 10 32 32 H 1.08003 * 126.51948 * 180.27046 * 13 12 11 33 33 H 1.07996 * 119.88751 * 0.02562 * 16 15 14 34 34 H 1.08004 * 119.89124 * 180.02562 * 17 16 15 35 35 H 1.07996 * 120.01119 * 180.27439 * 18 17 16 36 36 H 0.96998 * 119.99602 * 5.28340 * 22 20 19 37 37 H 1.08001 * 120.03720 * 359.97438 * 24 23 22 38 38 H 1.08001 * 119.96231 * 180.27772 * 25 24 23 39 39 H 1.07997 * 119.92915 * 180.02562 * 26 25 24 40 40 H 1.07997 * 119.96455 * 179.97438 * 27 26 25 41 41 H 1.07996 * 120.03375 * 179.97438 * 28 27 26 42 42 H 1.08001 * 120.10650 * 0.02562 * 29 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3165 0.0000 0.0000 3 14 2.2503 1.6178 0.0000 4 1 2.4979 2.0464 -1.4001 5 1 1.4477 2.6527 0.6999 6 1 3.5479 1.4403 0.7001 7 6 2.0097 -1.2007 0.0005 8 1 1.4698 -2.1361 0.0005 9 16 3.7718 -1.2006 0.0012 10 6 4.0778 -2.9359 0.0009 11 7 3.1621 -3.8785 0.0009 12 6 3.7600 -5.0782 0.0012 13 6 5.0940 -4.8891 -0.0044 14 7 5.3066 -3.5306 0.0018 15 6 6.5485 -2.8803 0.0025 16 6 6.8055 -1.8725 -0.9191 17 6 8.0281 -1.2278 -0.9224 18 6 9.0001 -1.5771 -0.0069 19 6 8.7536 -2.5919 0.9194 20 6 9.7945 -2.9719 1.8979 21 8 9.5759 -3.8523 2.7069 22 7 10.9860 -2.3419 1.8931 23 6 12.0089 -2.7742 2.7430 24 6 12.1326 -4.1222 3.0538 25 6 13.1474 -4.5465 3.8890 26 6 14.0366 -3.6301 4.4199 27 6 13.9135 -2.2867 4.1162 28 6 12.9009 -1.8558 3.2816 29 6 7.5194 -3.2423 0.9224 30 1 -0.4851 0.8399 -0.0004 31 1 3.2577 -6.0343 0.0009 32 1 5.8521 -5.6582 -0.0098 33 1 6.0470 -1.5914 -1.6346 34 1 8.2218 -0.4450 -1.6408 35 1 9.9525 -1.0681 -0.0096 36 1 11.1340 -1.5889 1.2999 37 1 11.4384 -4.8384 2.6396 38 1 13.2468 -5.5951 4.1275 39 1 14.8296 -3.9645 5.0724 40 1 14.6094 -1.5735 4.5327 41 1 12.8051 -0.8064 3.0452 42 1 7.3213 -4.0254 1.6393 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000058159319.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:12:44 Heat of formation + Delta-G solvation = 92.356320 kcal Electronic energy + Delta-G solvation = -27909.157737 eV Core-core repulsion = 23946.717759 eV Total energy + Delta-G solvation = -3962.439978 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 365.094 amu Computer time = 0.96 seconds Orbital eigenvalues (eV) -41.61878 -40.99774 -39.30974 -38.24018 -35.26285 -33.88226 -32.56291 -31.72256 -31.25063 -30.06460 -29.29435 -28.71707 -25.77485 -24.82713 -23.46534 -23.19344 -22.41528 -21.48447 -20.60964 -20.46095 -19.14427 -18.14724 -17.41495 -16.76441 -16.59542 -16.35978 -15.73548 -15.56543 -15.21092 -15.03032 -14.66701 -14.59706 -14.26918 -14.13830 -13.98362 -13.68314 -13.61212 -13.29799 -13.19548 -12.91563 -12.72476 -12.25278 -12.02614 -11.73091 -11.65438 -11.60250 -11.22601 -11.08445 -10.79322 -10.31924 -10.12978 -10.08272 -9.41749 -9.38437 -9.32711 -9.26999 -8.98142 -8.72463 -8.56900 -8.48140 -6.89953 -6.37393 -4.15548 0.38748 0.87499 1.01245 1.07333 2.27824 2.30289 2.54770 2.60688 3.09731 3.14165 3.21619 3.36386 3.42675 3.55925 3.69583 4.11967 4.17268 4.46157 4.50088 4.58095 4.60391 4.62178 4.82139 4.89762 5.00184 5.04664 5.08313 5.11462 5.20336 5.21543 5.40463 5.57603 5.66549 5.70095 5.79612 5.94510 5.96452 5.97606 6.02429 6.11562 6.14086 6.21865 6.40302 6.62368 6.67704 6.93650 7.20590 7.49727 7.68775 7.88611 8.55882 8.72480 9.01951 10.71840 Molecular weight = 365.09amu Principal moments of inertia in cm(-1) A = 0.014831 B = 0.002198 C = 0.002032 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1887.494782 B =12737.899993 C =13779.384621 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.865 5.865 2 C 0.098 3.902 3 Si 0.842 3.158 4 H -0.263 1.263 5 H -0.266 1.266 6 H -0.240 1.240 7 C -0.517 4.517 8 H 0.121 0.879 9 S 0.032 5.968 10 C 0.230 3.770 11 N -0.477 5.477 12 C -0.010 4.010 13 C -0.081 4.081 14 N -0.423 5.423 15 C 0.135 3.865 16 C -0.080 4.080 17 C -0.105 4.105 18 C -0.089 4.089 19 C -0.128 4.128 20 C 0.565 3.435 21 O -0.511 6.511 22 N -0.671 5.671 23 C 0.149 3.851 24 C -0.121 4.121 25 C -0.100 4.100 26 C -0.137 4.137 27 C -0.101 4.101 28 C -0.147 4.147 29 C -0.055 4.055 30 H 0.273 0.727 31 H 0.167 0.833 32 H 0.169 0.831 33 H 0.145 0.855 34 H 0.141 0.859 35 H 0.130 0.870 36 H 0.411 0.589 37 H 0.135 0.865 38 H 0.126 0.874 39 H 0.122 0.878 40 H 0.126 0.874 41 H 0.126 0.874 42 H 0.144 0.856 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 29.479 -3.052 1.623 29.681 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.501 5.501 2 C -0.112 4.112 3 Si 0.666 3.334 4 H -0.188 1.188 5 H -0.191 1.191 6 H -0.164 1.164 7 C -0.665 4.665 8 H 0.139 0.861 9 S 0.266 5.734 10 C -0.137 4.137 11 N -0.198 5.198 12 C -0.159 4.159 13 C -0.213 4.213 14 N -0.109 5.109 15 C 0.043 3.957 16 C -0.100 4.100 17 C -0.124 4.124 18 C -0.108 4.108 19 C -0.132 4.132 20 C 0.354 3.646 21 O -0.386 6.386 22 N -0.317 5.317 23 C 0.055 3.945 24 C -0.141 4.141 25 C -0.119 4.119 26 C -0.156 4.156 27 C -0.120 4.120 28 C -0.167 4.167 29 C -0.076 4.076 30 H 0.084 0.916 31 H 0.184 0.816 32 H 0.187 0.813 33 H 0.163 0.837 34 H 0.159 0.841 35 H 0.147 0.853 36 H 0.249 0.751 37 H 0.153 0.847 38 H 0.144 0.856 39 H 0.141 0.859 40 H 0.144 0.856 41 H 0.144 0.856 42 H 0.161 0.839 Dipole moment (debyes) X Y Z Total from point charges 28.974 -2.472 2.167 29.159 hybrid contribution 0.147 -0.069 -0.257 0.304 sum 29.121 -2.541 1.911 29.294 Atomic orbital electron populations 1.69913 1.05601 1.27712 1.46864 1.24674 0.94582 0.98307 0.93616 0.87011 0.81804 0.84550 0.80027 1.18794 1.19074 1.16407 1.22526 0.86301 0.99299 1.58375 0.86104 1.82764 1.12956 0.88404 1.89323 1.26166 0.80267 1.02199 1.05023 1.70913 1.29738 0.97754 1.21349 1.22359 0.90609 0.97099 1.05809 1.22594 0.98994 0.83543 1.16135 1.43027 1.03743 1.06004 1.58091 1.17569 0.85155 0.96388 0.96623 1.21551 0.97704 0.94210 0.96539 1.20987 0.92326 0.99934 0.99158 1.21289 0.99471 0.95589 0.94465 1.19471 0.94641 1.00319 0.98795 1.18316 0.81299 0.81557 0.83379 1.90812 1.79444 1.30466 1.37914 1.43409 1.11723 1.35477 1.41100 1.17737 0.89589 0.93132 0.94039 1.21202 0.98721 0.94302 0.99897 1.21075 0.94236 0.99921 0.96662 1.21162 0.99928 0.93403 1.01111 1.20950 0.97594 0.96004 0.97429 1.20918 0.97353 0.98745 0.99678 1.21125 0.91160 0.99299 0.95983 0.91643 0.81556 0.81329 0.83706 0.84072 0.85263 0.75144 0.84736 0.85646 0.85949 0.85631 0.85622 0.83872 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.87 -25.59 13.97 55.48 0.77 -24.82 16 2 C 0.10 2.76 5.50 -17.48 -0.10 2.67 16 3 Si 0.84 19.65 27.73 -169.99 -4.71 14.93 16 4 H -0.26 -5.96 7.11 56.52 0.40 -5.56 16 5 H -0.27 -6.07 7.11 56.52 0.40 -5.67 16 6 H -0.24 -5.33 6.74 56.52 0.38 -4.95 16 7 C -0.52 -14.82 9.90 30.88 0.31 -14.51 16 8 H 0.12 3.87 7.12 -52.49 -0.37 3.50 16 9 S 0.03 0.76 18.17 -107.50 -1.95 -1.20 16 10 C 0.23 5.22 7.80 -88.25 -0.69 4.53 16 11 N -0.48 -11.38 10.01 -13.31 -0.13 -11.51 16 12 C -0.01 -0.18 11.84 -17.83 -0.21 -0.39 16 13 C -0.08 -1.35 11.31 -16.25 -0.18 -1.54 16 14 N -0.42 -7.83 2.91 -60.72 -0.18 -8.01 16 15 C 0.14 2.08 5.85 -83.65 -0.49 1.59 16 16 C -0.08 -1.07 8.86 -39.32 -0.35 -1.42 16 17 C -0.11 -1.01 10.02 -39.67 -0.40 -1.41 16 18 C -0.09 -0.76 9.54 -39.15 -0.37 -1.14 16 19 C -0.13 -1.45 5.87 -104.99 -0.62 -2.07 16 20 C 0.57 6.58 7.51 -12.33 -0.09 6.49 16 21 O -0.51 -7.65 14.03 5.32 0.07 -7.57 16 22 N -0.67 -5.80 5.28 -10.72 -0.06 -5.85 16 23 C 0.15 1.41 6.28 -83.72 -0.53 0.89 16 24 C -0.12 -1.25 8.65 -39.39 -0.34 -1.59 16 25 C -0.10 -0.85 10.04 -39.61 -0.40 -1.25 16 26 C -0.14 -1.00 10.04 -39.55 -0.40 -1.39 16 27 C -0.10 -0.70 10.04 -39.61 -0.40 -1.10 16 28 C -0.15 -1.12 9.96 -39.39 -0.39 -1.51 16 29 C -0.05 -0.76 9.25 -38.99 -0.36 -1.12 16 30 H 0.27 7.42 8.31 -40.82 -0.34 7.08 16 31 H 0.17 2.57 8.06 -52.49 -0.42 2.15 16 32 H 0.17 2.16 8.06 -52.48 -0.42 1.74 16 33 H 0.15 2.06 7.54 -52.49 -0.40 1.67 16 34 H 0.14 0.94 8.06 -52.48 -0.42 0.52 16 35 H 0.13 0.59 6.41 -52.49 -0.34 0.26 16 36 H 0.41 2.16 6.86 -40.82 -0.28 1.88 16 37 H 0.13 1.55 6.41 -52.49 -0.34 1.21 16 38 H 0.13 0.83 8.06 -52.49 -0.42 0.41 16 39 H 0.12 0.62 8.06 -52.49 -0.42 0.20 16 40 H 0.13 0.58 8.06 -52.49 -0.42 0.16 16 41 H 0.13 0.68 8.06 -52.49 -0.42 0.26 16 42 H 0.14 2.08 7.65 -52.49 -0.40 1.67 16 LS Contribution 378.03 15.07 5.70 5.70 Total: -1.00 -35.36 378.03 -10.73 -46.09 By element: Atomic # 1 Polarization: 10.76 SS G_CDS: -4.24 Total: 6.52 kcal Atomic # 6 Polarization: -8.27 SS G_CDS: -6.00 Total: -14.28 kcal Atomic # 7 Polarization: -50.60 SS G_CDS: 0.41 Total: -50.19 kcal Atomic # 8 Polarization: -7.65 SS G_CDS: 0.07 Total: -7.57 kcal Atomic # 14 Polarization: 19.65 SS G_CDS: -4.71 Total: 14.93 kcal Atomic # 16 Polarization: 0.76 SS G_CDS: -1.95 Total: -1.20 kcal Total LS contribution 5.70 Total: 5.70 kcal Total: -35.36 -10.73 -46.09 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000058159319.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 138.445 kcal (2) G-P(sol) polarization free energy of solvation -35.358 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 103.087 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.731 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.089 kcal (6) G-S(sol) free energy of system = (1) + (5) 92.356 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.96 seconds