Wall clock time and date at job start Tue Mar 31 2020 06:09:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.13600 * 1 3 3 C 1.47202 * 179.97438 * 2 1 4 4 C 1.53000 * 109.47005 * 224.66525 * 3 2 1 5 5 N 1.46504 * 109.47304 * 179.97438 * 4 3 2 6 6 C 1.46496 * 119.99880 * 270.00471 * 5 4 3 7 7 C 1.50703 * 109.47077 * 269.99336 * 6 5 4 8 8 H 1.08005 * 119.99703 * 0.02562 * 7 6 5 9 9 C 1.37872 * 120.00292 * 180.02562 * 7 6 5 10 10 N 1.31518 * 119.99761 * 359.97438 * 9 7 6 11 11 Si 1.86803 * 120.00272 * 180.02562 * 9 7 6 12 12 H 1.48498 * 109.47206 * 59.99702 * 11 9 7 13 13 H 1.48496 * 109.47019 * 179.97438 * 11 9 7 14 14 H 1.48494 * 109.46839 * 299.99831 * 11 9 7 15 15 C 1.34777 * 119.99854 * 89.99731 * 5 4 3 16 16 O 1.21274 * 120.00135 * 180.27973 * 15 5 4 17 17 C 1.50706 * 119.99766 * 0.02562 * 15 5 4 18 18 O 1.42906 * 109.46699 * 179.97438 * 17 15 5 19 19 C 1.35651 * 116.99497 * 179.97438 * 18 17 15 20 20 C 1.38636 * 120.14658 * 359.73670 * 19 18 17 21 21 C 1.38208 * 120.07229 * 179.74210 * 20 19 18 22 22 Cl 1.73604 * 119.81999 * 180.25048 * 21 20 19 23 23 C 1.38698 * 120.36111 * 0.50007 * 21 20 19 24 24 C 1.37722 * 120.28745 * 359.77491 * 23 21 20 25 25 C 1.39743 * 119.91974 * 359.97438 * 24 23 21 26 26 C 1.47483 * 120.17499 * 179.97438 * 25 24 23 27 27 N 1.34767 * 120.00410 * 0.02562 * 26 25 24 28 28 O 1.21596 * 119.99639 * 180.02562 * 26 25 24 29 29 H 1.08994 * 109.46905 * 104.66793 * 3 2 1 30 30 H 1.08996 * 109.47181 * 344.66715 * 3 2 1 31 31 H 1.09001 * 109.46783 * 60.00107 * 4 3 2 32 32 H 1.08996 * 109.47306 * 300.00114 * 4 3 2 33 33 H 1.08997 * 109.47682 * 29.99532 * 6 5 4 34 34 H 1.09004 * 109.47271 * 149.99629 * 6 5 4 35 35 H 0.96999 * 119.99754 * 180.02562 * 10 9 7 36 36 H 1.09000 * 109.47161 * 299.99737 * 17 15 5 37 37 H 1.09001 * 109.46740 * 59.99879 * 17 15 5 38 38 H 1.08000 * 119.96410 * 359.97438 * 20 19 18 39 39 H 1.08006 * 119.85497 * 179.74738 * 23 21 20 40 40 H 1.08006 * 120.04430 * 179.97438 * 24 23 21 41 41 H 0.97002 * 120.00244 * 0.02562 * 27 26 25 42 42 H 0.97000 * 120.00069 * 179.97438 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.1360 0.0000 0.0000 3 6 2.6080 0.0007 0.0000 4 6 3.1175 1.0268 1.0140 5 7 4.5826 1.0271 1.0145 6 6 5.3149 0.1355 1.9172 7 6 5.5656 0.8404 3.2254 8 1 5.2142 1.8513 3.3700 9 6 6.2436 0.1948 4.2375 10 7 6.6711 -1.0364 4.0615 11 14 6.5538 1.0683 5.8593 12 1 5.2557 1.4403 6.4774 13 1 7.2962 0.1645 6.7742 14 1 7.3554 2.2943 5.6157 15 6 5.2565 1.8476 0.1844 16 8 6.4693 1.8442 0.1812 17 6 4.5031 2.7651 -0.7438 18 8 5.4318 3.5290 -1.5158 19 6 4.9134 4.4099 -2.4077 20 6 3.5395 4.5355 -2.5440 21 6 3.0129 5.4373 -3.4493 22 17 1.2914 5.5938 -3.6099 23 6 3.8523 6.2142 -4.2339 24 6 5.2194 6.0975 -4.1147 25 6 5.7646 5.1932 -3.1994 26 6 7.2278 5.0633 -3.0676 27 7 8.0428 5.8181 -3.8306 28 8 7.6987 4.2751 -2.2704 29 1 2.9712 0.2610 -0.9941 30 1 2.9718 -0.9902 0.2717 31 1 2.7543 0.7664 2.0082 32 1 2.7538 2.0177 0.7423 33 1 4.7260 -0.7641 2.0962 34 1 6.2675 -0.1383 1.4636 35 1 7.1478 -1.4908 4.7737 36 1 3.8764 2.1728 -1.4106 37 1 3.8764 3.4387 -0.1592 38 1 2.8799 3.9307 -1.9393 39 1 3.4319 6.9134 -4.9416 40 1 5.8693 6.7042 -4.7279 41 1 7.6672 6.4472 -4.4663 42 1 9.0051 5.7329 -3.7436 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000058183832.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:09:03 Heat of formation + Delta-G solvation = -80.741247 kcal Electronic energy + Delta-G solvation = -29793.274385 eV Core-core repulsion = 25378.142612 eV Total energy + Delta-G solvation = -4415.131773 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 365.097 amu Computer time = 0.99 seconds Orbital eigenvalues (eV) -41.82706 -40.79005 -39.67993 -38.65641 -37.97964 -37.31465 -36.70530 -34.89050 -34.71950 -32.23366 -32.00804 -31.51678 -30.25040 -28.29624 -25.35380 -25.19729 -24.78421 -23.30309 -21.84574 -20.16423 -19.85857 -18.87807 -18.51062 -18.35456 -18.02761 -17.60890 -17.35085 -17.30145 -16.68924 -16.18914 -16.05225 -15.87439 -15.85073 -15.68165 -15.34560 -14.83698 -14.59140 -14.51102 -14.38218 -14.07474 -13.96821 -13.61941 -13.55735 -13.26791 -13.18258 -12.98409 -12.78456 -12.74317 -12.62664 -12.50778 -12.17770 -12.01098 -11.99416 -11.77306 -11.69819 -11.03757 -10.62805 -10.62398 -10.58878 -10.04102 -9.55579 -9.38492 -8.18877 -6.31011 -0.40669 0.22025 0.97252 1.38955 1.43049 1.48423 1.55062 1.64504 1.79405 1.84450 1.86583 2.39565 2.53909 2.59056 2.68924 3.07570 3.13857 3.53906 3.65199 3.76448 3.90693 3.96939 3.99778 4.02229 4.09269 4.13338 4.33942 4.48344 4.53602 4.81527 4.84674 5.02806 5.03604 5.06914 5.09461 5.31885 5.45174 5.57170 5.83745 5.95249 6.11114 6.16463 6.53725 6.59747 6.65900 6.78272 7.30552 7.43950 7.44797 8.88041 Molecular weight = 365.10amu Principal moments of inertia in cm(-1) A = 0.008228 B = 0.003046 C = 0.002406 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3402.231086 B = 9189.093985 C =11634.231603 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.485 5.485 2 C 0.246 3.754 3 C -0.041 4.041 4 C 0.108 3.892 5 N -0.591 5.591 6 C 0.261 3.739 7 C -0.544 4.544 8 H 0.054 0.946 9 C 0.011 3.989 10 N -0.925 5.925 11 Si 0.958 3.042 12 H -0.260 1.260 13 H -0.281 1.281 14 H -0.283 1.283 15 C 0.501 3.499 16 O -0.568 6.568 17 C 0.036 3.964 18 O -0.287 6.287 19 C 0.176 3.824 20 C -0.217 4.217 21 C 0.028 3.972 22 Cl -0.052 7.052 23 C -0.151 4.151 24 C -0.016 4.016 25 C -0.193 4.193 26 C 0.548 3.452 27 N -0.832 5.832 28 O -0.570 6.570 29 H 0.136 0.864 30 H 0.123 0.877 31 H 0.092 0.908 32 H 0.109 0.891 33 H 0.043 0.957 34 H 0.001 0.999 35 H 0.266 0.734 36 H 0.133 0.867 37 H 0.121 0.879 38 H 0.161 0.839 39 H 0.173 0.827 40 H 0.185 0.815 41 H 0.417 0.583 42 H 0.410 0.590 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.408 17.170 -22.194 29.595 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.163 5.163 2 C -0.072 4.072 3 C -0.082 4.082 4 C -0.017 4.017 5 N -0.323 5.323 6 C 0.141 3.859 7 C -0.583 4.583 8 H 0.073 0.927 9 C -0.188 4.188 10 N -0.565 5.565 11 Si 0.783 3.217 12 H -0.184 1.184 13 H -0.206 1.206 14 H -0.209 1.209 15 C 0.288 3.712 16 O -0.446 6.446 17 C -0.042 4.042 18 O -0.197 6.197 19 C 0.128 3.872 20 C -0.237 4.237 21 C 0.001 3.999 22 Cl -0.023 7.023 23 C -0.170 4.170 24 C -0.034 4.034 25 C -0.197 4.197 26 C 0.334 3.666 27 N -0.398 5.398 28 O -0.449 6.449 29 H 0.153 0.847 30 H 0.141 0.859 31 H 0.110 0.890 32 H 0.127 0.873 33 H 0.061 0.939 34 H 0.019 0.981 35 H 0.075 0.925 36 H 0.150 0.850 37 H 0.138 0.862 38 H 0.178 0.822 39 H 0.191 0.809 40 H 0.202 0.798 41 H 0.250 0.750 42 H 0.242 0.758 Dipole moment (debyes) X Y Z Total from point charges -10.192 16.422 -21.507 28.916 hybrid contribution 0.946 0.041 1.120 1.467 sum -9.246 16.463 -20.388 27.788 Atomic orbital electron populations 1.81265 1.14287 1.10323 1.10420 1.29048 0.94810 0.91717 0.91604 1.19847 0.80309 1.04239 1.03795 1.21654 0.78495 1.00511 1.01001 1.47983 1.06977 1.39620 1.37738 1.18845 0.91532 0.88806 0.86735 1.21739 1.36694 1.00473 0.99354 0.92741 1.25727 0.95115 0.95610 1.02333 1.70016 1.38967 1.12781 1.34728 0.85617 0.78805 0.78102 0.79202 1.18409 1.20611 1.20854 1.20610 0.87731 0.81445 0.81411 1.90774 1.16550 1.68025 1.69276 1.22934 0.91407 0.95096 0.94734 1.86472 1.34701 1.49752 1.48804 1.19244 0.91663 0.88271 0.88071 1.21222 0.92939 1.04797 1.04705 1.21050 0.85800 0.96523 0.96518 1.98414 1.10245 1.96842 1.96821 1.21259 0.92308 1.01753 1.01670 1.21466 0.95389 0.93268 0.93326 1.19593 0.92315 1.04040 1.03771 1.18398 0.87443 0.80339 0.80390 1.43512 1.10423 1.43306 1.42573 1.91037 1.77725 1.38264 1.37884 0.84651 0.85930 0.89002 0.87265 0.93906 0.98077 0.92522 0.85004 0.86160 0.82195 0.80919 0.79788 0.75009 0.75834 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.49 -12.84 18.54 20.01 0.37 -12.47 16 2 C 0.25 5.03 15.43 89.44 1.38 6.41 16 3 C -0.04 -0.70 6.03 28.79 0.17 -0.53 16 4 C 0.11 2.52 5.17 86.38 0.45 2.97 16 5 N -0.59 -21.68 2.46 -826.15 -2.03 -23.71 16 6 C 0.26 12.91 5.16 85.63 0.44 13.35 16 7 C -0.54 -30.04 9.39 25.60 0.24 -29.80 16 8 H 0.05 2.97 7.81 -2.91 -0.02 2.95 16 9 C 0.01 0.65 5.46 84.65 0.46 1.11 16 10 N -0.93 -54.69 13.29 21.45 0.28 -54.40 16 11 Si 0.96 44.62 29.54 68.60 2.03 46.65 16 12 H -0.26 -11.29 7.11 99.48 0.71 -10.59 16 13 H -0.28 -12.75 7.11 99.48 0.71 -12.04 16 14 H -0.28 -13.41 7.11 99.48 0.71 -12.70 16 15 C 0.50 19.82 7.75 87.66 0.68 20.50 16 16 O -0.57 -30.81 16.08 16.03 0.26 -30.55 16 17 C 0.04 0.95 3.77 71.24 0.27 1.22 16 18 O -0.29 -9.60 7.74 -60.72 -0.47 -10.07 16 19 C 0.18 4.34 6.70 22.84 0.15 4.49 16 20 C -0.22 -3.79 8.80 22.36 0.20 -3.60 16 21 C 0.03 0.39 6.32 22.37 0.14 0.54 16 22 Cl -0.05 -0.68 28.94 -2.72 -0.08 -0.76 16 23 C -0.15 -1.45 9.80 22.26 0.22 -1.23 16 24 C -0.02 -0.16 9.53 22.51 0.21 0.05 16 25 C -0.19 -4.08 5.89 -20.01 -0.12 -4.20 16 26 C 0.55 14.42 8.03 86.68 0.70 15.12 16 27 N -0.83 -11.59 8.82 -175.86 -1.55 -13.14 16 28 O -0.57 -23.36 15.99 16.91 0.27 -23.09 16 29 H 0.14 1.61 7.22 -2.39 -0.02 1.59 16 30 H 0.12 2.19 8.14 -2.39 -0.02 2.17 16 31 H 0.09 2.35 8.07 -2.39 -0.02 2.33 16 32 H 0.11 1.80 6.44 -2.39 -0.02 1.78 16 33 H 0.04 2.05 8.07 -2.39 -0.02 2.03 16 34 H 0.00 0.06 7.42 -2.38 -0.02 0.05 16 35 H 0.27 14.91 8.31 -92.71 -0.77 14.14 16 36 H 0.13 2.23 6.69 -2.39 -0.02 2.21 16 37 H 0.12 2.41 6.94 -2.39 -0.02 2.39 16 38 H 0.16 2.18 6.30 -2.91 -0.02 2.16 16 39 H 0.17 0.59 8.06 -2.91 -0.02 0.56 16 40 H 0.19 0.14 6.40 -2.91 -0.02 0.12 16 41 H 0.42 1.80 6.86 -92.71 -0.64 1.16 16 42 H 0.41 5.36 8.93 -92.71 -0.83 4.54 16 Total: -1.00 -94.63 387.60 4.34 -90.29 By element: Atomic # 1 Polarization: 5.19 SS G_CDS: -0.34 Total: 4.86 kcal Atomic # 6 Polarization: 20.80 SS G_CDS: 5.60 Total: 26.39 kcal Atomic # 7 Polarization: -100.79 SS G_CDS: -2.92 Total: -103.71 kcal Atomic # 8 Polarization: -63.77 SS G_CDS: 0.06 Total: -63.72 kcal Atomic # 14 Polarization: 44.62 SS G_CDS: 2.03 Total: 46.65 kcal Atomic # 17 Polarization: -0.68 SS G_CDS: -0.08 Total: -0.76 kcal Total: -94.63 4.34 -90.29 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000058183832.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 9.553 kcal (2) G-P(sol) polarization free energy of solvation -94.633 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -85.080 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.339 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -90.294 kcal (6) G-S(sol) free energy of system = (1) + (5) -80.741 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.00 seconds