Wall clock time and date at job start Tue Mar 31 2020 07:01:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46506 * 1 3 3 C 1.46499 * 119.99537 * 2 1 4 4 C 1.50697 * 109.46949 * 269.99553 * 3 2 1 5 5 H 1.08004 * 120.00186 * 0.02562 * 4 3 2 6 6 C 1.37881 * 120.00081 * 180.02562 * 4 3 2 7 7 N 1.31519 * 120.00096 * 0.02562 * 6 4 3 8 8 Si 1.86802 * 120.00103 * 180.02562 * 6 4 3 9 9 H 1.48498 * 109.46927 * 59.99717 * 8 6 4 10 10 H 1.48496 * 109.47287 * 179.97438 * 8 6 4 11 11 H 1.48501 * 109.47040 * 299.99940 * 8 6 4 12 12 C 1.34777 * 120.00264 * 179.97438 * 2 1 3 13 13 O 1.21283 * 119.99750 * 180.02562 * 12 2 1 14 14 C 1.50702 * 119.99928 * 0.28128 * 12 2 1 15 15 N 1.46902 * 109.47027 * 179.72353 * 14 12 2 16 16 C 1.46848 * 110.99759 * 294.20938 * 15 14 12 17 17 C 1.53031 * 109.52183 * 174.16278 * 16 15 14 18 18 C 1.53125 * 109.28019 * 59.17805 * 17 16 15 19 19 N 1.46493 * 109.52214 * 182.44272 * 18 17 16 20 20 C 1.34782 * 119.99878 * 274.68210 * 19 18 17 21 21 O 1.21702 * 120.00113 * 359.97438 * 20 19 18 22 22 C 1.46586 * 119.99872 * 180.02562 * 20 19 18 23 23 C 1.36646 * 125.45648 * 180.02562 * 22 20 19 24 24 C 1.37475 * 113.29850 * 179.97438 * 23 22 20 25 25 C 1.33815 * 115.09799 * 359.97438 * 24 23 22 26 26 S 1.70620 * 110.95581 * 359.76451 * 25 24 23 27 27 C 1.53118 * 109.15784 * 302.34549 * 18 17 16 28 28 C 1.46843 * 110.99818 * 169.99758 * 15 14 12 29 29 H 1.08998 * 109.46921 * 269.99744 * 1 2 3 30 30 H 1.08994 * 109.46996 * 30.00327 * 1 2 3 31 31 H 1.09001 * 109.46578 * 150.00190 * 1 2 3 32 32 H 1.09001 * 109.47567 * 29.99407 * 3 2 1 33 33 H 1.09005 * 109.47076 * 149.99913 * 3 2 1 34 34 H 0.96991 * 119.99957 * 180.02562 * 7 6 4 35 35 H 1.09004 * 109.46965 * 299.72211 * 14 12 2 36 36 H 1.08994 * 109.46990 * 59.72065 * 14 12 2 37 37 H 1.09003 * 109.45649 * 294.17520 * 16 15 14 38 38 H 1.08995 * 109.46466 * 54.14585 * 16 15 14 39 39 H 1.09001 * 109.50516 * 299.23843 * 17 16 15 40 40 H 1.09000 * 109.50603 * 179.12077 * 17 16 15 41 41 H 1.08994 * 109.51952 * 62.24835 * 18 17 16 42 42 H 0.97001 * 120.00864 * 94.68187 * 19 18 17 43 43 H 1.08003 * 123.35272 * 359.93355 * 23 22 20 44 44 H 1.08000 * 122.44756 * 180.02562 * 24 23 22 45 45 H 1.08000 * 124.52249 * 180.02562 * 25 24 23 46 46 H 1.09001 * 109.50142 * 297.71135 * 27 18 17 47 47 H 1.08995 * 109.50409 * 177.59757 * 27 18 17 48 48 H 1.08996 * 109.46300 * 305.85393 * 28 15 14 49 49 H 1.09004 * 109.46280 * 65.83399 * 28 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4651 0.0000 0.0000 3 6 2.1974 1.2688 0.0000 4 6 2.4486 1.7037 -1.4208 5 1 2.0975 1.0961 -2.2417 6 6 3.1268 2.8775 -1.6728 7 7 3.5549 3.6172 -0.6732 8 14 3.4376 3.4170 -3.4340 9 1 2.1398 3.5952 -4.1334 10 1 4.1801 4.7030 -3.4341 11 1 4.2394 2.3819 -4.1346 12 6 2.1390 -1.1672 0.0005 13 8 3.3518 -1.1671 0.0010 14 6 1.3855 -2.4723 -0.0053 15 7 2.3402 -3.5888 -0.0102 16 6 3.1096 -3.6179 -1.2606 17 6 4.1894 -4.6985 -1.1717 18 6 3.5264 -6.0569 -0.9268 19 7 4.5585 -7.0865 -0.7826 20 6 5.0698 -7.6859 -1.8762 21 8 4.6738 -7.3720 -2.9834 22 6 6.1021 -8.7165 -1.7319 23 6 6.6958 -9.3932 -2.7600 24 6 7.6334 -10.3067 -2.3400 25 6 7.8036 -10.3768 -1.0146 26 16 6.7809 -9.2742 -0.2088 27 6 2.6926 -5.9851 0.3554 28 6 1.6561 -4.8672 0.2222 29 1 -0.3633 0.0000 1.0277 30 1 -0.3633 0.8899 -0.5139 31 1 -0.3632 -0.8900 -0.5138 32 1 1.6083 2.0285 0.5137 33 1 3.1499 1.1385 0.5139 34 1 4.0317 4.4431 -0.8505 35 1 0.7588 -2.5340 0.8844 36 1 0.7590 -2.5261 -0.8955 37 1 2.4415 -3.8396 -2.0929 38 1 3.5793 -2.6474 -1.4207 39 1 4.8660 -4.4701 -0.3481 40 1 4.7502 -4.7304 -2.1058 41 1 2.8796 -6.3035 -1.7686 42 1 4.8740 -7.3370 0.0998 43 1 6.4521 -9.2275 -3.7990 44 1 8.1923 -10.9220 -3.0295 45 1 8.4989 -11.0396 -0.5210 46 1 3.3456 -5.7769 1.2030 47 1 2.1839 -6.9362 0.5124 48 1 1.0701 -4.8040 1.1391 49 1 0.9950 -5.0832 -0.6171 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000058200972.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:01:18 Heat of formation + Delta-G solvation = -25.093141 kcal Electronic energy + Delta-G solvation = -30137.744239 eV Core-core repulsion = 25998.735444 eV Total energy + Delta-G solvation = -4139.008794 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 365.156 amu Computer time = 1.06 seconds Orbital eigenvalues (eV) -40.34907 -39.39423 -38.25610 -37.57413 -35.20571 -34.62925 -32.64799 -32.05864 -30.87515 -30.07154 -28.35710 -26.84464 -25.67391 -25.16249 -23.40433 -23.28168 -22.21207 -21.31891 -20.32180 -19.54367 -18.74689 -18.38040 -16.77689 -16.52266 -16.31741 -16.12909 -15.87211 -15.44317 -15.43204 -15.07796 -14.80277 -14.41526 -14.14907 -13.92637 -13.82425 -13.53818 -13.27001 -13.14147 -13.09176 -12.74776 -12.68788 -12.46495 -12.16106 -12.04163 -11.78465 -11.69394 -11.42686 -11.36195 -11.25216 -11.14796 -10.93858 -10.72862 -10.64561 -10.53512 -10.25007 -10.12161 -9.61746 -9.41768 -9.18444 -9.02261 -8.83548 -8.41230 -8.12383 -7.59299 -6.02179 -4.06988 0.10874 1.04460 1.44484 2.01477 2.81362 2.93729 3.33285 3.37795 3.39761 3.49052 3.66038 4.25342 4.39713 4.47111 4.54142 4.63837 4.79538 4.88340 4.91036 5.06251 5.10212 5.22634 5.30380 5.33168 5.37909 5.47174 5.49835 5.52105 5.55065 5.61491 5.69078 5.74303 5.79565 5.86440 5.89914 5.94635 6.02219 6.12358 6.21392 6.37753 6.39908 6.95983 7.13253 7.19108 7.21922 7.48129 7.58038 7.88973 7.94454 8.25845 8.46435 8.92931 9.16425 9.58118 11.05708 Molecular weight = 365.16amu Principal moments of inertia in cm(-1) A = 0.013713 B = 0.001875 C = 0.001739 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2041.293928 B =14931.885042 C =16101.844441 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.084 3.916 2 N -0.605 5.605 3 C 0.247 3.753 4 C -0.526 4.526 5 H 0.055 0.945 6 C 0.061 3.939 7 N -0.895 5.895 8 Si 0.897 3.103 9 H -0.277 1.277 10 H -0.286 1.286 11 H -0.276 1.276 12 C 0.505 3.495 13 O -0.523 6.523 14 C 0.038 3.962 15 N -0.520 5.520 16 C 0.053 3.947 17 C -0.121 4.121 18 C 0.144 3.856 19 N -0.720 5.720 20 C 0.590 3.410 21 O -0.526 6.526 22 C -0.265 4.265 23 C -0.057 4.057 24 C -0.150 4.150 25 C -0.230 4.230 26 S 0.200 5.800 27 C -0.121 4.121 28 C 0.060 3.940 29 H 0.044 0.956 30 H 0.073 0.927 31 H 0.054 0.946 32 H 0.031 0.969 33 H 0.044 0.956 34 H 0.264 0.736 35 H 0.096 0.904 36 H 0.057 0.943 37 H 0.028 0.972 38 H 0.106 0.894 39 H 0.076 0.924 40 H 0.071 0.929 41 H 0.088 0.912 42 H 0.397 0.603 43 H 0.154 0.846 44 H 0.146 0.854 45 H 0.169 0.831 46 H 0.079 0.921 47 H 0.072 0.928 48 H 0.080 0.920 49 H 0.035 0.965 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.243 -29.359 3.712 29.594 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.061 4.061 2 N -0.339 5.339 3 C 0.128 3.872 4 C -0.565 4.565 5 H 0.074 0.926 6 C -0.141 4.141 7 N -0.534 5.534 8 Si 0.725 3.275 9 H -0.203 1.203 10 H -0.212 1.212 11 H -0.202 1.202 12 C 0.290 3.710 13 O -0.399 6.399 14 C -0.093 4.093 15 N -0.245 5.245 16 C -0.075 4.075 17 C -0.160 4.160 18 C 0.040 3.960 19 N -0.370 5.370 20 C 0.376 3.624 21 O -0.404 6.404 22 C -0.385 4.385 23 C -0.090 4.090 24 C -0.181 4.181 25 C -0.368 4.368 26 S 0.467 5.533 27 C -0.160 4.160 28 C -0.069 4.069 29 H 0.062 0.938 30 H 0.092 0.908 31 H 0.073 0.927 32 H 0.049 0.951 33 H 0.062 0.938 34 H 0.073 0.927 35 H 0.114 0.886 36 H 0.075 0.925 37 H 0.046 0.954 38 H 0.124 0.876 39 H 0.095 0.905 40 H 0.089 0.911 41 H 0.106 0.894 42 H 0.231 0.769 43 H 0.172 0.828 44 H 0.164 0.836 45 H 0.187 0.813 46 H 0.098 0.902 47 H 0.091 0.909 48 H 0.099 0.901 49 H 0.053 0.947 Dipole moment (debyes) X Y Z Total from point charges 0.793 -28.489 4.887 28.916 hybrid contribution 0.059 -0.327 -2.707 2.727 sum 0.851 -28.816 2.180 28.911 Atomic orbital electron populations 1.21626 0.81639 1.02455 1.00339 1.48167 1.06053 1.07816 1.71840 1.19261 0.92567 0.78028 0.97383 1.21389 1.36523 1.06258 0.92301 0.92626 1.24938 0.95386 0.96424 0.97373 1.69921 1.38323 1.14365 1.30749 0.86572 0.78341 0.77843 0.84744 1.20300 1.21178 1.20167 1.20133 0.88268 0.84684 0.77886 1.90638 1.13635 1.86740 1.48914 1.22018 0.94258 0.90811 1.02197 1.61587 1.24903 1.01470 1.36572 1.22242 0.95100 1.01542 0.88571 1.21929 0.98556 0.92617 1.02920 1.21165 0.88668 0.87155 0.98968 1.45958 1.41904 1.40685 1.08500 1.16956 0.80541 0.80118 0.84783 1.90852 1.60387 1.64057 1.25126 1.24704 1.08003 1.07912 0.97920 1.20845 0.94075 0.93658 1.00419 1.20080 1.01087 1.01635 0.95275 1.25341 1.06541 1.05988 0.98932 1.83022 1.31691 1.31190 1.07410 1.21845 0.98184 0.98420 0.97511 1.22015 0.94954 0.88859 1.01028 0.93761 0.90790 0.92707 0.95103 0.93798 0.92683 0.88579 0.92503 0.95413 0.87556 0.90505 0.91073 0.89434 0.76903 0.82816 0.83627 0.81324 0.90187 0.90922 0.90135 0.94729 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.08 1.30 10.25 59.85 0.61 1.91 16 2 N -0.61 -12.77 2.86 -182.95 -0.52 -13.29 16 3 C 0.25 6.48 5.16 -5.20 -0.03 6.46 16 4 C -0.53 -14.98 9.39 -34.44 -0.32 -15.30 16 5 H 0.06 1.58 7.81 -52.48 -0.41 1.17 16 6 C 0.06 1.75 5.46 -17.82 -0.10 1.66 16 7 N -0.89 -26.77 13.29 55.43 0.74 -26.03 16 8 Si 0.90 22.09 29.54 -169.99 -5.02 17.07 16 9 H -0.28 -6.62 7.11 56.52 0.40 -6.22 16 10 H -0.29 -6.93 7.11 56.52 0.40 -6.53 16 11 H -0.28 -6.85 7.11 56.52 0.40 -6.45 16 12 C 0.50 10.39 7.35 -10.98 -0.08 10.31 16 13 O -0.52 -13.00 13.91 5.55 0.08 -12.93 16 14 C 0.04 0.57 4.00 -4.97 -0.02 0.55 16 15 N -0.52 -7.47 4.40 -236.12 -1.04 -8.51 16 16 C 0.05 0.83 5.11 -3.84 -0.02 0.81 16 17 C -0.12 -1.67 5.67 -26.65 -0.15 -1.82 16 18 C 0.14 1.61 2.52 -67.81 -0.17 1.44 16 19 N -0.72 -7.21 5.08 -55.03 -0.28 -7.49 16 20 C 0.59 7.10 7.75 -12.89 -0.10 7.00 16 21 O -0.53 -8.27 16.50 5.19 0.09 -8.18 16 22 C -0.26 -2.57 6.45 -36.79 -0.24 -2.80 16 23 C -0.06 -0.50 10.01 -40.43 -0.40 -0.91 16 24 C -0.15 -1.01 10.15 -41.41 -0.42 -1.43 16 25 C -0.23 -1.36 10.92 29.18 0.32 -1.04 16 26 S 0.20 1.30 22.16 -107.50 -2.38 -1.08 16 27 C -0.12 -1.10 5.57 -26.65 -0.15 -1.25 16 28 C 0.06 0.62 5.46 -3.84 -0.02 0.60 16 29 H 0.04 0.59 8.14 -51.93 -0.42 0.16 16 30 H 0.07 1.19 8.07 -51.93 -0.42 0.77 16 31 H 0.05 0.69 6.43 -51.93 -0.33 0.35 16 32 H 0.03 0.82 8.07 -51.93 -0.42 0.40 16 33 H 0.04 1.30 7.42 -51.93 -0.39 0.92 16 34 H 0.26 7.47 8.31 -40.82 -0.34 7.13 16 35 H 0.10 1.17 7.96 -51.93 -0.41 0.76 16 36 H 0.06 0.77 7.38 -51.93 -0.38 0.39 16 37 H 0.03 0.41 8.14 -51.93 -0.42 -0.01 16 38 H 0.11 2.08 5.78 -51.93 -0.30 1.78 16 39 H 0.08 1.10 8.14 -51.93 -0.42 0.68 16 40 H 0.07 1.06 8.14 -51.93 -0.42 0.64 16 41 H 0.09 1.09 7.58 -51.93 -0.39 0.70 16 42 H 0.40 3.01 7.72 -40.82 -0.32 2.70 16 43 H 0.15 1.35 8.06 -52.48 -0.42 0.92 16 44 H 0.15 0.67 8.06 -52.49 -0.42 0.24 16 45 H 0.17 0.58 8.06 -52.49 -0.42 0.16 16 46 H 0.08 0.73 8.14 -51.93 -0.42 0.30 16 47 H 0.07 0.52 8.14 -51.93 -0.42 0.10 16 48 H 0.08 0.71 8.01 -51.93 -0.42 0.29 16 49 H 0.03 0.34 8.14 -51.93 -0.42 -0.08 16 LS Contribution 411.96 15.07 6.21 6.21 Total: -1.00 -35.80 411.96 -10.98 -46.77 By element: Atomic # 1 Polarization: 8.84 SS G_CDS: -7.55 Total: 1.28 kcal Atomic # 6 Polarization: 7.46 SS G_CDS: -1.29 Total: 6.17 kcal Atomic # 7 Polarization: -54.22 SS G_CDS: -1.10 Total: -55.32 kcal Atomic # 8 Polarization: -21.27 SS G_CDS: 0.16 Total: -21.11 kcal Atomic # 14 Polarization: 22.09 SS G_CDS: -5.02 Total: 17.07 kcal Atomic # 16 Polarization: 1.30 SS G_CDS: -2.38 Total: -1.08 kcal Total LS contribution 6.21 Total: 6.21 kcal Total: -35.80 -10.98 -46.77 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000058200972.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 21.680 kcal (2) G-P(sol) polarization free energy of solvation -35.797 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -14.117 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.977 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.773 kcal (6) G-S(sol) free energy of system = (1) + (5) -25.093 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.06 seconds