Wall clock time and date at job start Tue Mar 31 2020 07:01:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46506 * 1 3 3 C 1.46499 * 119.99537 * 2 1 4 4 C 1.50697 * 109.46949 * 269.99553 * 3 2 1 5 5 H 1.08004 * 120.00186 * 0.02562 * 4 3 2 6 6 C 1.37881 * 120.00081 * 180.02562 * 4 3 2 7 7 N 1.31519 * 120.00096 * 0.02562 * 6 4 3 8 8 Si 1.86802 * 120.00103 * 180.02562 * 6 4 3 9 9 H 1.48498 * 109.46927 * 59.99717 * 8 6 4 10 10 H 1.48496 * 109.47287 * 179.97438 * 8 6 4 11 11 H 1.48501 * 109.47040 * 299.99940 * 8 6 4 12 12 C 1.34777 * 120.00264 * 179.97438 * 2 1 3 13 13 O 1.21283 * 119.99750 * 180.02562 * 12 2 1 14 14 C 1.50702 * 119.99928 * 0.28128 * 12 2 1 15 15 N 1.46902 * 109.47027 * 179.72353 * 14 12 2 16 16 C 1.46848 * 110.99759 * 294.20938 * 15 14 12 17 17 C 1.53031 * 109.52183 * 174.16278 * 16 15 14 18 18 C 1.53125 * 109.28019 * 59.17805 * 17 16 15 19 19 N 1.46493 * 109.52214 * 182.44272 * 18 17 16 20 20 C 1.34782 * 119.99878 * 274.68210 * 19 18 17 21 21 O 1.21702 * 120.00113 * 359.97438 * 20 19 18 22 22 C 1.46586 * 119.99872 * 180.02562 * 20 19 18 23 23 C 1.36646 * 125.45648 * 180.02562 * 22 20 19 24 24 C 1.37475 * 113.29850 * 179.97438 * 23 22 20 25 25 C 1.33815 * 115.09799 * 359.97438 * 24 23 22 26 26 S 1.70620 * 110.95581 * 359.76451 * 25 24 23 27 27 C 1.53118 * 109.15784 * 302.34549 * 18 17 16 28 28 C 1.46843 * 110.99818 * 169.99758 * 15 14 12 29 29 H 1.08998 * 109.46921 * 269.99744 * 1 2 3 30 30 H 1.08994 * 109.46996 * 30.00327 * 1 2 3 31 31 H 1.09001 * 109.46578 * 150.00190 * 1 2 3 32 32 H 1.09001 * 109.47567 * 29.99407 * 3 2 1 33 33 H 1.09005 * 109.47076 * 149.99913 * 3 2 1 34 34 H 0.96991 * 119.99957 * 180.02562 * 7 6 4 35 35 H 1.09004 * 109.46965 * 299.72211 * 14 12 2 36 36 H 1.08994 * 109.46990 * 59.72065 * 14 12 2 37 37 H 1.09003 * 109.45649 * 294.17520 * 16 15 14 38 38 H 1.08995 * 109.46466 * 54.14585 * 16 15 14 39 39 H 1.09001 * 109.50516 * 299.23843 * 17 16 15 40 40 H 1.09000 * 109.50603 * 179.12077 * 17 16 15 41 41 H 1.08994 * 109.51952 * 62.24835 * 18 17 16 42 42 H 0.97001 * 120.00864 * 94.68187 * 19 18 17 43 43 H 1.08003 * 123.35272 * 359.93355 * 23 22 20 44 44 H 1.08000 * 122.44756 * 180.02562 * 24 23 22 45 45 H 1.08000 * 124.52249 * 180.02562 * 25 24 23 46 46 H 1.09001 * 109.50142 * 297.71135 * 27 18 17 47 47 H 1.08995 * 109.50409 * 177.59757 * 27 18 17 48 48 H 1.08996 * 109.46300 * 305.85393 * 28 15 14 49 49 H 1.09004 * 109.46280 * 65.83399 * 28 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4651 0.0000 0.0000 3 6 2.1974 1.2688 0.0000 4 6 2.4486 1.7037 -1.4208 5 1 2.0975 1.0961 -2.2417 6 6 3.1268 2.8775 -1.6728 7 7 3.5549 3.6172 -0.6732 8 14 3.4376 3.4170 -3.4340 9 1 2.1398 3.5952 -4.1334 10 1 4.1801 4.7030 -3.4341 11 1 4.2394 2.3819 -4.1346 12 6 2.1390 -1.1672 0.0005 13 8 3.3518 -1.1671 0.0010 14 6 1.3855 -2.4723 -0.0053 15 7 2.3402 -3.5888 -0.0102 16 6 3.1096 -3.6179 -1.2606 17 6 4.1894 -4.6985 -1.1717 18 6 3.5264 -6.0569 -0.9268 19 7 4.5585 -7.0865 -0.7826 20 6 5.0698 -7.6859 -1.8762 21 8 4.6738 -7.3720 -2.9834 22 6 6.1021 -8.7165 -1.7319 23 6 6.6958 -9.3932 -2.7600 24 6 7.6334 -10.3067 -2.3400 25 6 7.8036 -10.3768 -1.0146 26 16 6.7809 -9.2742 -0.2088 27 6 2.6926 -5.9851 0.3554 28 6 1.6561 -4.8672 0.2222 29 1 -0.3633 0.0000 1.0277 30 1 -0.3633 0.8899 -0.5139 31 1 -0.3632 -0.8900 -0.5138 32 1 1.6083 2.0285 0.5137 33 1 3.1499 1.1385 0.5139 34 1 4.0317 4.4431 -0.8505 35 1 0.7588 -2.5340 0.8844 36 1 0.7590 -2.5261 -0.8955 37 1 2.4415 -3.8396 -2.0929 38 1 3.5793 -2.6474 -1.4207 39 1 4.8660 -4.4701 -0.3481 40 1 4.7502 -4.7304 -2.1058 41 1 2.8796 -6.3035 -1.7686 42 1 4.8740 -7.3370 0.0998 43 1 6.4521 -9.2275 -3.7990 44 1 8.1923 -10.9220 -3.0295 45 1 8.4989 -11.0396 -0.5210 46 1 3.3456 -5.7769 1.2030 47 1 2.1839 -6.9362 0.5124 48 1 1.0701 -4.8040 1.1391 49 1 0.9950 -5.0832 -0.6171 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000058200972.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:01:17 Heat of formation + Delta-G solvation = -51.152070 kcal Electronic energy + Delta-G solvation = -30138.874239 eV Core-core repulsion = 25998.735444 eV Total energy + Delta-G solvation = -4140.138794 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 365.156 amu Computer time = 1.17 seconds Orbital eigenvalues (eV) -41.33873 -40.71847 -39.33707 -38.34745 -36.59087 -36.03924 -34.72860 -33.12588 -31.86177 -30.84884 -30.06638 -28.13216 -27.12789 -26.08181 -24.80126 -24.27616 -23.65138 -22.18039 -21.26504 -20.21044 -19.97012 -19.48545 -18.68798 -17.89776 -17.50982 -17.19094 -16.86745 -16.65339 -16.60993 -16.21414 -16.14245 -15.74396 -15.44787 -15.13629 -14.81851 -14.49852 -14.39197 -14.30380 -13.84374 -13.80932 -13.78781 -13.69995 -13.42856 -13.26565 -13.14333 -13.08160 -12.91230 -12.73493 -12.56596 -12.37216 -12.22896 -12.17248 -11.98283 -11.88552 -11.69161 -11.61040 -11.21287 -10.64998 -10.50884 -10.25865 -9.84951 -9.53420 -9.36230 -9.24405 -8.22667 -6.37445 -0.52121 0.47403 0.90930 1.34174 1.38544 1.38950 1.45652 1.90879 1.98479 2.12223 2.26883 2.40887 2.99665 3.06192 3.60789 3.74326 3.80100 3.86614 4.02479 4.13119 4.20257 4.27069 4.28671 4.34084 4.43102 4.50158 4.51228 4.52720 4.59419 4.71697 4.76720 4.85728 4.95498 4.98193 4.99737 5.01409 5.06501 5.09437 5.20492 5.23779 5.25611 5.33917 5.38940 5.57052 5.84962 5.94591 6.07060 6.17792 6.36452 6.70756 6.85838 7.03462 7.28947 7.57626 8.83713 Molecular weight = 365.16amu Principal moments of inertia in cm(-1) A = 0.013713 B = 0.001875 C = 0.001739 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2041.293928 B =14931.885042 C =16101.844441 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.079 3.921 2 N -0.614 5.614 3 C 0.261 3.739 4 C -0.541 4.541 5 H 0.050 0.950 6 C 0.007 3.993 7 N -0.927 5.927 8 Si 0.965 3.035 9 H -0.260 1.260 10 H -0.277 1.277 11 H -0.281 1.281 12 C 0.492 3.508 13 O -0.579 6.579 14 C 0.053 3.947 15 N -0.536 5.536 16 C 0.061 3.939 17 C -0.114 4.114 18 C 0.151 3.849 19 N -0.709 5.709 20 C 0.586 3.414 21 O -0.576 6.576 22 C -0.305 4.305 23 C -0.063 4.063 24 C -0.161 4.161 25 C -0.219 4.219 26 S 0.243 5.757 27 C -0.113 4.113 28 C 0.058 3.942 29 H 0.073 0.927 30 H 0.063 0.937 31 H 0.092 0.908 32 H 0.023 0.977 33 H -0.004 1.004 34 H 0.267 0.733 35 H 0.135 0.865 36 H 0.078 0.922 37 H 0.032 0.968 38 H 0.057 0.943 39 H 0.066 0.934 40 H 0.047 0.953 41 H 0.076 0.924 42 H 0.410 0.590 43 H 0.143 0.857 44 H 0.167 0.833 45 H 0.201 0.799 46 H 0.083 0.917 47 H 0.104 0.896 48 H 0.109 0.891 49 H 0.046 0.954 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.103 -32.209 4.610 32.556 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.063 4.063 2 N -0.347 5.347 3 C 0.140 3.860 4 C -0.580 4.580 5 H 0.069 0.931 6 C -0.192 4.192 7 N -0.567 5.567 8 Si 0.789 3.211 9 H -0.184 1.184 10 H -0.202 1.202 11 H -0.206 1.206 12 C 0.281 3.719 13 O -0.459 6.459 14 C -0.078 4.078 15 N -0.262 5.262 16 C -0.068 4.068 17 C -0.153 4.153 18 C 0.047 3.953 19 N -0.359 5.359 20 C 0.374 3.626 21 O -0.457 6.457 22 C -0.425 4.425 23 C -0.098 4.098 24 C -0.192 4.192 25 C -0.356 4.356 26 S 0.510 5.490 27 C -0.151 4.151 28 C -0.069 4.069 29 H 0.092 0.908 30 H 0.082 0.918 31 H 0.111 0.889 32 H 0.041 0.959 33 H 0.014 0.986 34 H 0.076 0.924 35 H 0.153 0.847 36 H 0.096 0.904 37 H 0.050 0.950 38 H 0.076 0.924 39 H 0.084 0.916 40 H 0.066 0.934 41 H 0.094 0.906 42 H 0.247 0.753 43 H 0.161 0.839 44 H 0.185 0.815 45 H 0.218 0.782 46 H 0.102 0.898 47 H 0.122 0.878 48 H 0.127 0.873 49 H 0.064 0.936 Dipole moment (debyes) X Y Z Total from point charges -0.607 -31.369 5.834 31.913 hybrid contribution 0.547 0.511 -2.911 3.005 sum -0.060 -30.858 2.924 30.996 Atomic orbital electron populations 1.21928 0.77914 1.03833 1.02672 1.48201 1.08379 1.06309 1.71813 1.18696 0.91079 0.80503 0.95749 1.21667 1.36741 1.06445 0.93117 0.93124 1.25851 0.95008 0.96528 1.01841 1.70040 1.38886 1.14802 1.32964 0.85513 0.78845 0.77349 0.79371 1.18412 1.20201 1.20637 1.21296 0.88068 0.86354 0.76231 1.90616 1.16430 1.87706 1.51139 1.21971 0.93639 0.87313 1.04858 1.61532 1.25799 1.03336 1.35486 1.21979 0.95606 0.99364 0.89809 1.21803 0.97966 0.94233 1.01280 1.21021 0.88650 0.85517 1.00120 1.45831 1.41384 1.39849 1.08852 1.17357 0.80586 0.80272 0.84353 1.90813 1.62203 1.65827 1.26871 1.24614 1.08898 1.08697 1.00322 1.21018 0.94558 0.94101 1.00090 1.20240 1.01015 1.01678 0.96222 1.25808 1.05871 1.05252 0.98711 1.82818 1.30778 1.30428 1.04988 1.21845 0.97810 0.99599 0.95842 1.22202 0.95274 0.86693 1.02742 0.90847 0.91838 0.88932 0.95918 0.98562 0.92417 0.84723 0.90399 0.95025 0.92446 0.91562 0.93380 0.90628 0.75296 0.83892 0.81531 0.78229 0.89838 0.87774 0.87330 0.93586 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.08 2.28 10.25 127.77 1.31 3.59 16 2 N -0.61 -26.17 2.86 -851.12 -2.43 -28.61 16 3 C 0.26 14.38 5.16 85.63 0.44 14.82 16 4 C -0.54 -31.87 9.39 25.60 0.24 -31.63 16 5 H 0.05 2.96 7.81 -2.91 -0.02 2.93 16 6 C 0.01 0.40 5.46 84.66 0.46 0.86 16 7 N -0.93 -57.16 13.29 21.45 0.28 -56.87 16 8 Si 0.96 46.10 29.54 68.60 2.03 48.13 16 9 H -0.26 -11.60 7.11 99.48 0.71 -10.90 16 10 H -0.28 -12.74 7.11 99.48 0.71 -12.03 16 11 H -0.28 -13.53 7.11 99.48 0.71 -12.82 16 12 C 0.49 20.54 7.35 87.66 0.64 21.18 16 13 O -0.58 -30.49 13.91 -3.04 -0.04 -30.53 16 14 C 0.05 1.44 4.00 85.56 0.34 1.78 16 15 N -0.54 -14.68 4.40 -900.94 -3.96 -18.64 16 16 C 0.06 1.97 5.11 86.32 0.44 2.41 16 17 C -0.11 -3.30 5.67 30.65 0.17 -3.13 16 18 C 0.15 3.30 2.52 45.07 0.11 3.42 16 19 N -0.71 -13.95 5.08 -446.21 -2.27 -16.22 16 20 C 0.59 14.56 7.75 86.42 0.67 15.23 16 21 O -0.58 -19.22 16.50 -4.35 -0.07 -19.30 16 22 C -0.31 -5.88 6.45 24.08 0.16 -5.72 16 23 C -0.06 -1.13 10.01 21.72 0.22 -0.91 16 24 C -0.16 -1.90 10.15 21.08 0.21 -1.68 16 25 C -0.22 -1.95 10.92 66.81 0.73 -1.22 16 26 S 0.24 2.66 22.16 -56.49 -1.25 1.41 16 27 C -0.11 -1.73 5.57 30.65 0.17 -1.56 16 28 C 0.06 1.00 5.46 86.33 0.47 1.47 16 29 H 0.07 1.72 8.14 -2.39 -0.02 1.70 16 30 H 0.06 1.98 8.07 -2.39 -0.02 1.96 16 31 H 0.09 1.98 6.43 -2.39 -0.02 1.96 16 32 H 0.02 1.26 8.07 -2.39 -0.02 1.24 16 33 H 0.00 -0.24 7.42 -2.38 -0.02 -0.26 16 34 H 0.27 15.45 8.31 -92.72 -0.77 14.68 16 35 H 0.14 2.67 7.96 -2.38 -0.02 2.66 16 36 H 0.08 1.84 7.38 -2.39 -0.02 1.83 16 37 H 0.03 0.96 8.14 -2.39 -0.02 0.94 16 38 H 0.06 2.43 5.78 -2.39 -0.01 2.42 16 39 H 0.07 2.02 8.14 -2.39 -0.02 2.00 16 40 H 0.05 1.57 8.14 -2.39 -0.02 1.55 16 41 H 0.08 1.88 7.58 -2.39 -0.02 1.86 16 42 H 0.41 5.69 7.72 -92.71 -0.72 4.97 16 43 H 0.14 2.72 8.06 -2.91 -0.02 2.70 16 44 H 0.17 1.16 8.06 -2.91 -0.02 1.14 16 45 H 0.20 0.51 8.06 -2.91 -0.02 0.49 16 46 H 0.08 1.27 8.14 -2.39 -0.02 1.25 16 47 H 0.10 1.03 8.14 -2.39 -0.02 1.01 16 48 H 0.11 1.35 8.01 -2.39 -0.02 1.33 16 49 H 0.05 0.73 8.14 -2.38 -0.02 0.71 16 Total: -1.00 -85.72 411.96 -0.67 -86.38 By element: Atomic # 1 Polarization: 15.09 SS G_CDS: 0.25 Total: 15.34 kcal Atomic # 6 Polarization: 12.11 SS G_CDS: 6.80 Total: 18.90 kcal Atomic # 7 Polarization: -111.97 SS G_CDS: -8.37 Total: -120.34 kcal Atomic # 8 Polarization: -49.71 SS G_CDS: -0.11 Total: -49.83 kcal Atomic # 14 Polarization: 46.10 SS G_CDS: 2.03 Total: 48.13 kcal Atomic # 16 Polarization: 2.66 SS G_CDS: -1.25 Total: 1.41 kcal Total: -85.72 -0.67 -86.38 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000058200972.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 35.233 kcal (2) G-P(sol) polarization free energy of solvation -85.715 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -50.483 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.669 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -86.385 kcal (6) G-S(sol) free energy of system = (1) + (5) -51.152 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.18 seconds