Wall clock time and date at job start Tue Mar 31 2020 05:41:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 C 1.35319 * 126.66501 * 2 1 4 4 C 1.42272 * 103.92343 * 179.97438 * 3 2 1 5 5 C 1.48325 * 126.93934 * 179.97438 * 4 3 2 6 6 O 1.21503 * 119.99904 * 0.02562 * 5 4 3 7 7 N 1.34771 * 120.00319 * 180.02562 * 5 4 3 8 8 C 1.46500 * 120.00610 * 180.02562 * 7 5 4 9 9 C 1.53112 * 109.52638 * 154.99784 * 8 7 5 10 10 C 1.53037 * 109.27894 * 177.55947 * 9 8 7 11 11 N 1.46853 * 109.52190 * 300.82270 * 10 9 8 12 12 C 1.46897 * 110.99754 * 185.84008 * 11 10 9 13 13 C 1.50706 * 109.47280 * 169.99979 * 12 11 10 14 14 O 1.21281 * 119.99660 * 359.97438 * 13 12 11 15 15 N 1.34771 * 120.00094 * 179.97438 * 13 12 11 16 16 C 1.46501 * 120.00308 * 359.97438 * 15 13 12 17 17 C 1.46506 * 119.99594 * 179.97438 * 15 13 12 18 18 C 1.50699 * 109.46928 * 90.00049 * 17 15 13 19 19 H 1.08003 * 119.99963 * 0.02562 * 18 17 15 20 20 C 1.37873 * 119.99865 * 179.97438 * 18 17 15 21 21 N 1.31514 * 120.00518 * 0.02562 * 20 18 17 22 22 Si 1.86803 * 119.99987 * 179.97438 * 20 18 17 23 23 H 1.48501 * 109.46948 * 0.02562 * 22 20 18 24 24 H 1.48501 * 109.47174 * 120.00320 * 22 20 18 25 25 H 1.48497 * 109.47378 * 240.00235 * 22 20 18 26 26 C 1.46845 * 111.19859 * 61.74142 * 11 10 9 27 27 C 1.53038 * 109.52126 * 298.25655 * 26 11 10 28 28 N 1.30989 * 106.12059 * 0.26206 * 4 3 2 29 29 O 1.20903 * 111.43612 * 359.53493 * 28 4 3 30 30 H 1.08999 * 109.47139 * 90.00223 * 1 2 3 31 31 H 1.09001 * 109.46939 * 210.00076 * 1 2 3 32 32 H 1.08998 * 109.47410 * 330.00490 * 1 2 3 33 33 H 1.08008 * 128.03435 * 359.95459 * 3 2 1 34 34 H 0.97000 * 119.99895 * 359.97438 * 7 5 4 35 35 H 1.09003 * 109.52199 * 34.86837 * 8 7 5 36 36 H 1.08995 * 109.50380 * 57.61810 * 9 8 7 37 37 H 1.08997 * 109.50819 * 297.49729 * 9 8 7 38 38 H 1.09003 * 109.46775 * 180.80580 * 10 9 8 39 39 H 1.09003 * 109.45588 * 60.83016 * 10 9 8 40 40 H 1.08997 * 109.47661 * 49.99867 * 12 11 10 41 41 H 1.09004 * 109.47408 * 289.99662 * 12 11 10 42 42 H 1.08999 * 109.46532 * 269.99942 * 16 15 13 43 43 H 1.09000 * 109.46877 * 29.99967 * 16 15 13 44 44 H 1.09000 * 109.47251 * 150.00072 * 16 15 13 45 45 H 1.09004 * 109.47073 * 209.99877 * 17 15 13 46 46 H 1.09000 * 109.47212 * 329.99960 * 17 15 13 47 47 H 0.96992 * 120.00316 * 179.97438 * 21 20 18 48 48 H 1.08999 * 109.46412 * 58.27585 * 26 11 10 49 49 H 1.08995 * 109.45901 * 178.24487 * 26 11 10 50 50 H 1.08999 * 109.50623 * 299.23956 * 27 26 11 51 51 H 1.09006 * 109.50042 * 179.12123 * 27 26 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3150 1.0854 0.0000 4 6 3.6271 0.5355 0.0006 5 6 4.9075 1.2842 0.0003 6 8 4.9007 2.4992 0.0000 7 7 6.0785 0.6170 0.0005 8 6 7.3431 1.3564 0.0008 9 6 8.4450 0.4857 0.6108 10 6 9.7753 1.2400 0.5528 11 7 10.0969 1.5609 -0.8437 12 6 11.4328 2.1624 -0.9513 13 6 11.8282 2.2515 -2.4028 14 8 11.0719 1.8525 -3.2629 15 7 13.0223 2.7743 -2.7451 16 6 13.9357 3.2567 -1.7062 17 6 13.4068 2.8603 -4.1562 18 6 12.9501 4.1804 -4.7217 19 1 12.4262 4.8850 -4.0929 20 6 13.2020 4.4890 -6.0416 21 7 13.8404 3.6312 -6.8073 22 14 12.6352 6.1250 -6.7429 23 1 11.9450 6.9048 -5.6843 24 1 13.8116 6.8881 -7.2318 25 1 11.6991 5.8828 -7.8699 26 6 9.0767 2.4352 -1.4362 27 6 7.7256 1.7165 -1.4375 28 7 3.4761 -0.7657 -0.0048 29 8 2.3073 -1.0749 0.0006 30 1 -0.3633 0.0000 -1.0276 31 1 -0.3633 -0.8900 0.5139 32 1 -0.3634 0.8900 0.5137 33 1 2.0300 2.1272 -0.0007 34 1 6.0839 -0.3530 0.0012 35 1 7.2320 2.2679 0.5882 36 1 8.5285 -0.4434 0.0471 37 1 8.1989 0.2614 1.6487 38 1 10.5647 0.6170 0.9734 39 1 9.6951 2.1623 1.1281 40 1 12.1537 1.5449 -0.4156 41 1 11.4172 3.1621 -0.5171 42 1 13.7364 4.3098 -1.5078 43 1 13.7849 2.6801 -0.7936 44 1 14.9652 3.1391 -2.0444 45 1 14.4907 2.7834 -4.2427 46 1 12.9395 2.0463 -4.7104 47 1 14.0173 3.8482 -7.7360 48 1 9.0000 3.3519 -0.8515 49 1 9.3587 2.6802 -2.4601 50 1 7.7978 0.8068 -2.0335 51 1 6.9654 2.3717 -1.8631 RHF calculation, no. of doubly occupied orbitals= 69 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000058209893.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:41:16 Heat of formation + Delta-G solvation = 2.457014 kcal Electronic energy + Delta-G solvation = -32460.921837 eV Core-core repulsion = 27978.073498 eV Total energy + Delta-G solvation = -4482.848339 eV No. of doubly occupied orbitals = 69 Molecular weight (most abundant/longest-lived isotopes) = 364.194 amu Computer time = 2.03 seconds Orbital eigenvalues (eV) -45.49552 -40.31910 -39.33805 -37.99909 -35.31235 -34.65688 -34.57023 -33.82357 -32.63046 -31.72953 -30.88737 -28.45927 -28.31946 -26.94279 -25.70047 -25.01782 -23.34453 -23.30111 -22.83328 -22.00079 -20.53763 -19.86796 -18.39608 -18.25522 -18.01686 -17.19244 -16.61436 -16.53322 -16.25635 -15.76032 -15.42138 -15.03284 -14.97767 -14.67641 -14.43515 -14.22531 -14.16144 -13.93179 -13.82374 -13.77443 -13.44426 -13.17753 -12.97847 -12.76969 -12.49164 -12.17466 -12.05742 -11.91903 -11.86892 -11.71428 -11.38397 -11.26629 -11.16058 -10.94355 -10.86706 -10.73480 -10.70420 -10.56995 -10.43609 -10.12714 -9.88177 -9.58954 -9.33632 -8.84488 -8.42254 -8.14402 -7.59758 -6.02829 -4.07372 0.70796 1.24542 2.45212 2.64417 2.84192 3.30583 3.37913 3.40961 3.48549 3.55919 3.65255 4.05193 4.23685 4.45726 4.47359 4.52763 4.68242 4.76427 4.81981 4.84812 4.89594 5.06779 5.08986 5.20772 5.25155 5.28243 5.32161 5.39745 5.42146 5.48800 5.49771 5.51864 5.58385 5.68931 5.76001 5.85228 5.95543 5.99098 6.07714 6.18622 6.34384 6.37533 6.94871 7.06163 7.14767 7.20386 7.47348 7.57261 7.58003 7.78325 7.93954 8.25416 8.45321 8.92904 9.15732 9.57843 11.05187 Molecular weight = 364.19amu Principal moments of inertia in cm(-1) A = 0.013350 B = 0.001794 C = 0.001650 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2096.845127 B =15602.819282 C =16967.324808 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.074 4.074 2 C -0.033 4.033 3 C -0.185 4.185 4 C -0.023 4.023 5 C 0.599 3.401 6 O -0.520 6.520 7 N -0.708 5.708 8 C 0.143 3.857 9 C -0.121 4.121 10 C 0.060 3.940 11 N -0.520 5.520 12 C 0.038 3.962 13 C 0.505 3.495 14 O -0.523 6.523 15 N -0.605 5.605 16 C 0.086 3.914 17 C 0.246 3.754 18 C -0.524 4.524 19 H 0.057 0.943 20 C 0.060 3.940 21 N -0.895 5.895 22 Si 0.897 3.103 23 H -0.274 1.274 24 H -0.284 1.284 25 H -0.283 1.283 26 C 0.054 3.946 27 C -0.122 4.122 28 N -0.332 5.332 29 O 0.121 5.879 30 H 0.091 0.909 31 H 0.086 0.914 32 H 0.095 0.905 33 H 0.181 0.819 34 H 0.406 0.594 35 H 0.088 0.912 36 H 0.080 0.920 37 H 0.072 0.928 38 H 0.081 0.919 39 H 0.035 0.965 40 H 0.097 0.903 41 H 0.057 0.943 42 H 0.048 0.952 43 H 0.054 0.946 44 H 0.068 0.932 45 H 0.031 0.969 46 H 0.044 0.956 47 H 0.262 0.738 48 H 0.028 0.972 49 H 0.107 0.893 50 H 0.077 0.923 51 H 0.071 0.929 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -20.852 -8.551 20.712 30.609 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.132 4.132 2 C -0.096 4.096 3 C -0.208 4.208 4 C -0.182 4.182 5 C 0.382 3.618 6 O -0.393 6.393 7 N -0.358 5.358 8 C 0.039 3.961 9 C -0.159 4.159 10 C -0.068 4.068 11 N -0.245 5.245 12 C -0.093 4.093 13 C 0.291 3.709 14 O -0.399 6.399 15 N -0.339 5.339 16 C -0.058 4.058 17 C 0.127 3.873 18 C -0.563 4.563 19 H 0.075 0.925 20 C -0.141 4.141 21 N -0.534 5.534 22 Si 0.725 3.275 23 H -0.198 1.198 24 H -0.210 1.210 25 H -0.209 1.209 26 C -0.074 4.074 27 C -0.160 4.160 28 N -0.033 5.033 29 O 0.046 5.954 30 H 0.110 0.890 31 H 0.105 0.895 32 H 0.113 0.887 33 H 0.199 0.801 34 H 0.241 0.759 35 H 0.106 0.894 36 H 0.099 0.901 37 H 0.091 0.909 38 H 0.099 0.901 39 H 0.053 0.947 40 H 0.115 0.885 41 H 0.075 0.925 42 H 0.067 0.933 43 H 0.072 0.928 44 H 0.086 0.914 45 H 0.049 0.951 46 H 0.062 0.938 47 H 0.072 0.928 48 H 0.046 0.954 49 H 0.125 0.875 50 H 0.096 0.904 51 H 0.089 0.911 Dipole moment (debyes) X Y Z Total from point charges -20.234 -9.321 19.785 29.795 hybrid contribution -0.441 2.033 0.011 2.080 sum -20.676 -7.288 19.796 29.538 Atomic orbital electron populations 1.20394 0.83265 1.04991 1.04536 1.24533 0.96619 0.85364 1.03038 1.22467 0.89687 1.01652 1.06953 1.23539 0.96871 0.90190 1.07633 1.16875 0.81624 0.86412 0.76888 1.90825 1.86677 1.12427 1.49418 1.45956 1.05227 1.10810 1.73846 1.21231 0.81355 0.95503 0.97993 1.21840 0.93521 0.99607 1.00964 1.22018 0.96756 0.98916 0.89141 1.61587 1.01160 1.45669 1.16125 1.22021 0.91673 0.99128 0.96475 1.20122 0.82087 0.78776 0.89960 1.90639 1.50237 1.47787 1.51269 1.48161 1.16396 1.59796 1.09528 1.21610 0.94765 0.98803 0.90643 1.19290 0.95610 0.97964 0.74421 1.21466 1.36995 1.02068 0.95812 0.92521 1.24934 0.95148 0.97290 0.96773 1.69938 1.41140 1.35250 1.07049 0.86460 0.78389 0.83563 0.79107 1.19847 1.20988 1.20858 1.22239 0.90187 0.92492 1.02513 1.21933 0.96637 1.01982 0.95486 1.74172 0.97356 1.15548 1.16270 1.84772 1.11101 1.33508 1.66065 0.89018 0.89504 0.88676 0.80147 0.75873 0.89357 0.90092 0.90890 0.90085 0.94690 0.88526 0.92497 0.93339 0.92781 0.91364 0.95081 0.93803 0.92794 0.95357 0.87505 0.90427 0.91078 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -0.16 10.45 36.01 0.38 0.22 16 2 C -0.03 -0.21 7.47 -35.35 -0.26 -0.47 16 3 C -0.19 -1.57 10.92 -39.07 -0.43 -1.99 16 4 C -0.02 -0.25 7.19 -82.53 -0.59 -0.85 16 5 C 0.60 7.52 7.82 -12.11 -0.09 7.42 16 6 O -0.52 -8.01 16.61 5.36 0.09 -7.92 16 7 N -0.71 -7.68 5.08 -54.48 -0.28 -7.96 16 8 C 0.14 1.64 2.52 -67.81 -0.17 1.46 16 9 C -0.12 -1.15 5.57 -26.65 -0.15 -1.30 16 10 C 0.06 0.64 5.46 -3.83 -0.02 0.62 16 11 N -0.52 -7.56 4.40 -236.11 -1.04 -8.60 16 12 C 0.04 0.57 4.00 -4.97 -0.02 0.55 16 13 C 0.50 10.45 7.35 -10.99 -0.08 10.37 16 14 O -0.52 -13.08 13.91 5.56 0.08 -13.00 16 15 N -0.61 -12.83 2.86 -182.95 -0.52 -13.35 16 16 C 0.09 1.34 10.29 59.85 0.62 1.96 16 17 C 0.25 6.50 5.20 -5.19 -0.03 6.47 16 18 C -0.52 -15.03 9.39 -34.44 -0.32 -15.36 16 19 H 0.06 1.63 7.81 -52.48 -0.41 1.22 16 20 C 0.06 1.75 5.46 -17.82 -0.10 1.65 16 21 N -0.89 -26.86 13.29 55.43 0.74 -26.12 16 22 Si 0.90 22.18 29.54 -169.99 -5.02 17.16 16 23 H -0.27 -6.69 7.11 56.52 0.40 -6.29 16 24 H -0.28 -6.83 7.11 56.52 0.40 -6.42 16 25 H -0.28 -6.99 7.11 56.52 0.40 -6.59 16 26 C 0.05 0.84 5.11 -3.83 -0.02 0.82 16 27 C -0.12 -1.70 5.67 -26.65 -0.15 -1.85 16 28 N -0.33 -3.43 11.84 33.29 0.39 -3.04 16 29 O 0.12 1.03 11.18 17.26 0.19 1.22 16 30 H 0.09 0.11 8.14 -51.93 -0.42 -0.31 16 31 H 0.09 0.08 8.14 -51.93 -0.42 -0.34 16 32 H 0.09 0.08 8.14 -51.93 -0.42 -0.35 16 33 H 0.18 1.27 8.06 -52.48 -0.42 0.84 16 34 H 0.41 3.77 8.36 -40.82 -0.34 3.43 16 35 H 0.09 1.10 7.58 -51.93 -0.39 0.71 16 36 H 0.08 0.79 8.14 -51.93 -0.42 0.37 16 37 H 0.07 0.56 8.14 -51.93 -0.42 0.14 16 38 H 0.08 0.73 8.02 -51.93 -0.42 0.32 16 39 H 0.03 0.35 8.14 -51.93 -0.42 -0.07 16 40 H 0.10 1.19 7.25 -51.93 -0.38 0.81 16 41 H 0.06 0.78 8.09 -51.93 -0.42 0.36 16 42 H 0.05 0.73 8.14 -51.93 -0.42 0.31 16 43 H 0.05 0.64 6.44 -51.93 -0.33 0.30 16 44 H 0.07 1.03 7.89 -51.93 -0.41 0.62 16 45 H 0.03 0.83 7.89 -51.93 -0.41 0.42 16 46 H 0.04 1.31 7.42 -51.93 -0.39 0.92 16 47 H 0.26 7.42 8.31 -40.82 -0.34 7.08 16 48 H 0.03 0.42 8.14 -51.93 -0.42 0.00 16 49 H 0.11 2.10 5.78 -51.93 -0.30 1.80 16 50 H 0.08 1.15 8.14 -51.93 -0.42 0.73 16 51 H 0.07 1.06 8.14 -51.93 -0.42 0.63 16 LS Contribution 420.20 15.07 6.33 6.33 Total: -1.00 -36.48 420.20 -8.47 -44.95 By element: Atomic # 1 Polarization: 8.60 SS G_CDS: -7.98 Total: 0.62 kcal Atomic # 6 Polarization: 11.16 SS G_CDS: -1.45 Total: 9.72 kcal Atomic # 7 Polarization: -58.36 SS G_CDS: -0.71 Total: -59.07 kcal Atomic # 8 Polarization: -20.06 SS G_CDS: 0.36 Total: -19.70 kcal Atomic # 14 Polarization: 22.18 SS G_CDS: -5.02 Total: 17.16 kcal Total LS contribution 6.33 Total: 6.33 kcal Total: -36.48 -8.47 -44.95 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000058209893.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 47.404 kcal (2) G-P(sol) polarization free energy of solvation -36.482 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 10.923 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.466 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.947 kcal (6) G-S(sol) free energy of system = (1) + (5) 2.457 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 2.04 seconds