Wall clock time and date at job start Tue Mar 31 2020 05:41:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 C 1.35319 * 126.66501 * 2 1 4 4 C 1.42272 * 103.92343 * 179.97438 * 3 2 1 5 5 C 1.48325 * 126.93934 * 179.97438 * 4 3 2 6 6 O 1.21503 * 119.99904 * 0.02562 * 5 4 3 7 7 N 1.34771 * 120.00319 * 180.02562 * 5 4 3 8 8 C 1.46500 * 120.00610 * 180.02562 * 7 5 4 9 9 C 1.53112 * 109.52638 * 154.99784 * 8 7 5 10 10 C 1.53037 * 109.27894 * 177.55947 * 9 8 7 11 11 N 1.46853 * 109.52190 * 300.82270 * 10 9 8 12 12 C 1.46897 * 110.99754 * 185.84008 * 11 10 9 13 13 C 1.50706 * 109.47280 * 169.99979 * 12 11 10 14 14 O 1.21281 * 119.99660 * 359.97438 * 13 12 11 15 15 N 1.34771 * 120.00094 * 179.97438 * 13 12 11 16 16 C 1.46501 * 120.00308 * 359.97438 * 15 13 12 17 17 C 1.46506 * 119.99594 * 179.97438 * 15 13 12 18 18 C 1.50699 * 109.46928 * 90.00049 * 17 15 13 19 19 H 1.08003 * 119.99963 * 0.02562 * 18 17 15 20 20 C 1.37873 * 119.99865 * 179.97438 * 18 17 15 21 21 N 1.31514 * 120.00518 * 0.02562 * 20 18 17 22 22 Si 1.86803 * 119.99987 * 179.97438 * 20 18 17 23 23 H 1.48501 * 109.46948 * 0.02562 * 22 20 18 24 24 H 1.48501 * 109.47174 * 120.00320 * 22 20 18 25 25 H 1.48497 * 109.47378 * 240.00235 * 22 20 18 26 26 C 1.46845 * 111.19859 * 61.74142 * 11 10 9 27 27 C 1.53038 * 109.52126 * 298.25655 * 26 11 10 28 28 N 1.30989 * 106.12059 * 0.26206 * 4 3 2 29 29 O 1.20903 * 111.43612 * 359.53493 * 28 4 3 30 30 H 1.08999 * 109.47139 * 90.00223 * 1 2 3 31 31 H 1.09001 * 109.46939 * 210.00076 * 1 2 3 32 32 H 1.08998 * 109.47410 * 330.00490 * 1 2 3 33 33 H 1.08008 * 128.03435 * 359.95459 * 3 2 1 34 34 H 0.97000 * 119.99895 * 359.97438 * 7 5 4 35 35 H 1.09003 * 109.52199 * 34.86837 * 8 7 5 36 36 H 1.08995 * 109.50380 * 57.61810 * 9 8 7 37 37 H 1.08997 * 109.50819 * 297.49729 * 9 8 7 38 38 H 1.09003 * 109.46775 * 180.80580 * 10 9 8 39 39 H 1.09003 * 109.45588 * 60.83016 * 10 9 8 40 40 H 1.08997 * 109.47661 * 49.99867 * 12 11 10 41 41 H 1.09004 * 109.47408 * 289.99662 * 12 11 10 42 42 H 1.08999 * 109.46532 * 269.99942 * 16 15 13 43 43 H 1.09000 * 109.46877 * 29.99967 * 16 15 13 44 44 H 1.09000 * 109.47251 * 150.00072 * 16 15 13 45 45 H 1.09004 * 109.47073 * 209.99877 * 17 15 13 46 46 H 1.09000 * 109.47212 * 329.99960 * 17 15 13 47 47 H 0.96992 * 120.00316 * 179.97438 * 21 20 18 48 48 H 1.08999 * 109.46412 * 58.27585 * 26 11 10 49 49 H 1.08995 * 109.45901 * 178.24487 * 26 11 10 50 50 H 1.08999 * 109.50623 * 299.23956 * 27 26 11 51 51 H 1.09006 * 109.50042 * 179.12123 * 27 26 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3150 1.0854 0.0000 4 6 3.6271 0.5355 0.0006 5 6 4.9075 1.2842 0.0003 6 8 4.9007 2.4992 0.0000 7 7 6.0785 0.6170 0.0005 8 6 7.3431 1.3564 0.0008 9 6 8.4450 0.4857 0.6108 10 6 9.7753 1.2400 0.5528 11 7 10.0969 1.5609 -0.8437 12 6 11.4328 2.1624 -0.9513 13 6 11.8282 2.2515 -2.4028 14 8 11.0719 1.8525 -3.2629 15 7 13.0223 2.7743 -2.7451 16 6 13.9357 3.2567 -1.7062 17 6 13.4068 2.8603 -4.1562 18 6 12.9501 4.1804 -4.7217 19 1 12.4262 4.8850 -4.0929 20 6 13.2020 4.4890 -6.0416 21 7 13.8404 3.6312 -6.8073 22 14 12.6352 6.1250 -6.7429 23 1 11.9450 6.9048 -5.6843 24 1 13.8116 6.8881 -7.2318 25 1 11.6991 5.8828 -7.8699 26 6 9.0767 2.4352 -1.4362 27 6 7.7256 1.7165 -1.4375 28 7 3.4761 -0.7657 -0.0048 29 8 2.3073 -1.0749 0.0006 30 1 -0.3633 0.0000 -1.0276 31 1 -0.3633 -0.8900 0.5139 32 1 -0.3634 0.8900 0.5137 33 1 2.0300 2.1272 -0.0007 34 1 6.0839 -0.3530 0.0012 35 1 7.2320 2.2679 0.5882 36 1 8.5285 -0.4434 0.0471 37 1 8.1989 0.2614 1.6487 38 1 10.5647 0.6170 0.9734 39 1 9.6951 2.1623 1.1281 40 1 12.1537 1.5449 -0.4156 41 1 11.4172 3.1621 -0.5171 42 1 13.7364 4.3098 -1.5078 43 1 13.7849 2.6801 -0.7936 44 1 14.9652 3.1391 -2.0444 45 1 14.4907 2.7834 -4.2427 46 1 12.9395 2.0463 -4.7104 47 1 14.0173 3.8482 -7.7360 48 1 9.0000 3.3519 -0.8515 49 1 9.3587 2.6802 -2.4601 50 1 7.7978 0.8068 -2.0335 51 1 6.9654 2.3717 -1.8631 RHF calculation, no. of doubly occupied orbitals= 69 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000058209893.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:41:13 Heat of formation + Delta-G solvation = -25.083090 kcal Electronic energy + Delta-G solvation = -32462.116065 eV Core-core repulsion = 27978.073498 eV Total energy + Delta-G solvation = -4484.042567 eV No. of doubly occupied orbitals = 69 Molecular weight (most abundant/longest-lived isotopes) = 364.194 amu Computer time = 3.04 seconds Orbital eigenvalues (eV) -46.19241 -41.36854 -40.71681 -39.24541 -36.64345 -36.14758 -35.24717 -34.74997 -34.41949 -32.79785 -31.90133 -30.23131 -28.72759 -28.28027 -27.16944 -26.15246 -24.70028 -24.30853 -23.86703 -23.23950 -21.49207 -20.77465 -19.98742 -18.95628 -18.72369 -18.70338 -18.05668 -17.79843 -17.46671 -17.18073 -16.66158 -16.58022 -16.12614 -15.93553 -15.64497 -15.39305 -15.13013 -14.88170 -14.59594 -14.49984 -14.40520 -14.26430 -13.96576 -13.89040 -13.77342 -13.44692 -13.36314 -13.21233 -13.09748 -12.94828 -12.77914 -12.59569 -12.46924 -12.38854 -12.26523 -12.19679 -11.94073 -11.73573 -11.67595 -11.62079 -11.44206 -10.66620 -10.53160 -10.43517 -10.26506 -9.39848 -9.25575 -8.24044 -6.38775 -0.04112 0.61884 1.32858 1.35579 1.46993 1.68136 1.89154 1.93252 2.02649 2.25651 2.39399 2.78721 2.96740 3.04951 3.45654 3.63894 3.72744 3.80673 3.89448 3.98709 4.08288 4.15562 4.23592 4.28999 4.32343 4.36036 4.43665 4.52078 4.55326 4.67685 4.74477 4.76021 4.79544 4.82236 4.84357 4.91884 4.94278 4.97599 5.04349 5.05177 5.18066 5.22404 5.23599 5.30176 5.56328 5.83296 5.92831 6.05801 6.15244 6.17859 6.69770 6.80476 6.84120 6.96358 7.27855 7.55976 8.82780 Molecular weight = 364.19amu Principal moments of inertia in cm(-1) A = 0.013350 B = 0.001794 C = 0.001650 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2096.845127 B =15602.819282 C =16967.324808 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.075 4.075 2 C -0.011 4.011 3 C -0.205 4.205 4 C -0.047 4.047 5 C 0.596 3.404 6 O -0.556 6.556 7 N -0.698 5.698 8 C 0.150 3.850 9 C -0.113 4.113 10 C 0.059 3.941 11 N -0.538 5.538 12 C 0.053 3.947 13 C 0.492 3.508 14 O -0.579 6.579 15 N -0.614 5.614 16 C 0.080 3.920 17 C 0.261 3.739 18 C -0.541 4.541 19 H 0.050 0.950 20 C 0.007 3.993 21 N -0.928 5.928 22 Si 0.966 3.034 23 H -0.269 1.269 24 H -0.267 1.267 25 H -0.282 1.282 26 C 0.061 3.939 27 C -0.114 4.114 28 N -0.346 5.346 29 O 0.123 5.877 30 H 0.106 0.894 31 H 0.103 0.897 32 H 0.113 0.887 33 H 0.190 0.810 34 H 0.415 0.585 35 H 0.082 0.918 36 H 0.079 0.921 37 H 0.103 0.897 38 H 0.108 0.892 39 H 0.049 0.951 40 H 0.136 0.864 41 H 0.079 0.921 42 H 0.054 0.946 43 H 0.102 0.898 44 H 0.070 0.930 45 H 0.024 0.976 46 H -0.004 1.004 47 H 0.267 0.733 48 H 0.035 0.965 49 H 0.058 0.942 50 H 0.062 0.938 51 H 0.051 0.949 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -21.943 -8.556 23.697 33.411 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.131 4.131 2 C -0.074 4.074 3 C -0.228 4.228 4 C -0.205 4.205 5 C 0.381 3.619 6 O -0.433 6.433 7 N -0.349 5.349 8 C 0.046 3.954 9 C -0.151 4.151 10 C -0.068 4.068 11 N -0.263 5.263 12 C -0.078 4.078 13 C 0.281 3.719 14 O -0.459 6.459 15 N -0.347 5.347 16 C -0.062 4.062 17 C 0.139 3.861 18 C -0.579 4.579 19 H 0.069 0.931 20 C -0.192 4.192 21 N -0.567 5.567 22 Si 0.790 3.210 23 H -0.193 1.193 24 H -0.192 1.192 25 H -0.208 1.208 26 C -0.067 4.067 27 C -0.153 4.153 28 N -0.047 5.047 29 O 0.047 5.953 30 H 0.125 0.875 31 H 0.122 0.878 32 H 0.131 0.869 33 H 0.207 0.793 34 H 0.252 0.748 35 H 0.100 0.900 36 H 0.098 0.902 37 H 0.121 0.879 38 H 0.127 0.873 39 H 0.067 0.933 40 H 0.154 0.846 41 H 0.097 0.903 42 H 0.073 0.927 43 H 0.120 0.880 44 H 0.089 0.911 45 H 0.042 0.958 46 H 0.014 0.986 47 H 0.076 0.924 48 H 0.053 0.947 49 H 0.077 0.923 50 H 0.081 0.919 51 H 0.070 0.930 Dipole moment (debyes) X Y Z Total from point charges -21.289 -9.348 22.829 32.585 hybrid contribution -0.174 1.959 -0.935 2.178 sum -21.463 -7.389 21.894 31.537 Atomic orbital electron populations 1.20686 0.79799 1.06714 1.05943 1.25254 0.98087 0.83896 1.00154 1.22702 0.89069 1.02794 1.08211 1.23493 0.96968 0.90751 1.09306 1.17156 0.82501 0.86149 0.76107 1.90793 1.87295 1.13916 1.51255 1.45895 1.04775 1.11202 1.73004 1.21121 0.82313 0.96078 0.95876 1.21836 0.92134 0.98734 1.02416 1.22192 0.97913 1.00106 0.86580 1.61523 1.00548 1.45248 1.19005 1.21974 0.92680 1.01308 0.91821 1.21298 0.81028 0.77214 0.92393 1.90617 1.51777 1.49968 1.53563 1.48195 1.17837 1.60123 1.08513 1.21920 0.93679 0.99884 0.90686 1.18730 0.94358 0.95383 0.77617 1.21731 1.37060 1.02782 0.96372 0.93145 1.25845 0.95101 1.01107 0.97145 1.70050 1.42003 1.37203 1.07493 0.85399 0.78334 0.79101 0.78154 1.19329 1.19195 1.20818 1.21981 0.91235 0.93435 1.00090 1.21805 0.95508 1.00653 0.97329 1.74159 0.98385 1.15234 1.16930 1.84741 1.10839 1.34229 1.65510 0.87534 0.87792 0.86899 0.79264 0.74833 0.89965 0.90208 0.87911 0.87341 0.93273 0.84612 0.90341 0.92706 0.87951 0.91144 0.95840 0.98586 0.92417 0.94665 0.92332 0.91876 0.93012 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -0.09 10.45 71.24 0.74 0.65 16 2 C -0.01 -0.12 7.47 25.01 0.19 0.06 16 3 C -0.20 -3.37 10.92 22.60 0.25 -3.12 16 4 C -0.05 -1.04 7.19 42.96 0.31 -0.73 16 5 C 0.60 15.35 7.82 86.93 0.68 16.02 16 6 O -0.56 -17.76 16.61 -3.72 -0.06 -17.82 16 7 N -0.70 -15.14 5.08 -444.58 -2.26 -17.39 16 8 C 0.15 3.37 2.52 45.07 0.11 3.48 16 9 C -0.11 -1.87 5.57 30.64 0.17 -1.70 16 10 C 0.06 1.05 5.46 86.32 0.47 1.52 16 11 N -0.54 -14.91 4.40 -900.91 -3.96 -18.87 16 12 C 0.05 1.44 4.00 85.56 0.34 1.79 16 13 C 0.49 20.65 7.35 87.66 0.64 21.29 16 14 O -0.58 -30.68 13.91 -3.03 -0.04 -30.72 16 15 N -0.61 -26.28 2.86 -851.11 -2.43 -28.71 16 16 C 0.08 2.34 10.29 127.77 1.31 3.66 16 17 C 0.26 14.40 5.20 85.63 0.45 14.84 16 18 C -0.54 -32.02 9.39 25.60 0.24 -31.78 16 19 H 0.05 2.97 7.81 -2.91 -0.02 2.95 16 20 C 0.01 0.41 5.46 84.65 0.46 0.87 16 21 N -0.93 -57.30 13.29 21.45 0.28 -57.01 16 22 Si 0.97 46.23 29.54 68.60 2.03 48.25 16 23 H -0.27 -12.54 7.11 99.48 0.71 -11.84 16 24 H -0.27 -12.00 7.11 99.48 0.71 -11.30 16 25 H -0.28 -13.43 7.11 99.48 0.71 -12.73 16 26 C 0.06 1.97 5.11 86.33 0.44 2.41 16 27 C -0.11 -3.34 5.67 30.65 0.17 -3.17 16 28 N -0.35 -7.04 11.84 -49.52 -0.59 -7.62 16 29 O 0.12 1.97 11.18 71.95 0.80 2.77 16 30 H 0.11 -0.08 8.14 -2.39 -0.02 -0.10 16 31 H 0.10 -0.15 8.14 -2.39 -0.02 -0.17 16 32 H 0.11 -0.18 8.14 -2.39 -0.02 -0.20 16 33 H 0.19 2.61 8.06 -2.91 -0.02 2.58 16 34 H 0.41 7.52 8.36 -92.71 -0.78 6.75 16 35 H 0.08 2.00 7.58 -2.39 -0.02 1.98 16 36 H 0.08 1.38 8.14 -2.39 -0.02 1.36 16 37 H 0.10 1.17 8.14 -2.39 -0.02 1.15 16 38 H 0.11 1.40 8.02 -2.39 -0.02 1.38 16 39 H 0.05 0.78 8.14 -2.39 -0.02 0.76 16 40 H 0.14 2.68 7.25 -2.39 -0.02 2.66 16 41 H 0.08 1.87 8.09 -2.38 -0.02 1.85 16 42 H 0.05 1.54 8.14 -2.39 -0.02 1.52 16 43 H 0.10 1.98 6.44 -2.39 -0.02 1.97 16 44 H 0.07 2.01 7.89 -2.39 -0.02 1.99 16 45 H 0.02 1.31 7.89 -2.38 -0.02 1.29 16 46 H 0.00 -0.26 7.42 -2.39 -0.02 -0.27 16 47 H 0.27 15.40 8.31 -92.71 -0.77 14.63 16 48 H 0.04 1.05 8.14 -2.39 -0.02 1.04 16 49 H 0.06 2.47 5.78 -2.39 -0.01 2.46 16 50 H 0.06 2.00 8.14 -2.39 -0.02 1.98 16 51 H 0.05 1.67 8.14 -2.38 -0.02 1.65 16 Total: -1.00 -86.60 420.20 0.94 -85.67 By element: Atomic # 1 Polarization: 15.18 SS G_CDS: 0.18 Total: 15.36 kcal Atomic # 6 Polarization: 19.12 SS G_CDS: 6.99 Total: 26.11 kcal Atomic # 7 Polarization: -120.66 SS G_CDS: -8.95 Total: -129.61 kcal Atomic # 8 Polarization: -46.47 SS G_CDS: 0.70 Total: -45.77 kcal Atomic # 14 Polarization: 46.23 SS G_CDS: 2.03 Total: 48.25 kcal Total: -86.60 0.94 -85.67 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000058209893.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 60.584 kcal (2) G-P(sol) polarization free energy of solvation -86.603 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -26.019 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.936 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -85.667 kcal (6) G-S(sol) free energy of system = (1) + (5) -25.083 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 3.04 seconds