Wall clock time and date at job start Tue Mar 31 2020 06:08:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50697 * 1 3 3 C 1.39759 * 125.84237 * 2 1 4 4 C 1.36105 * 107.82936 * 180.13962 * 3 2 1 5 5 N 1.39474 * 126.21646 * 179.90068 * 4 3 2 6 6 C 1.34787 * 119.99696 * 359.69263 * 5 4 3 7 7 O 1.21284 * 120.00022 * 359.97438 * 6 5 4 8 8 C 1.50700 * 119.99726 * 180.02562 * 6 5 4 9 9 S 1.81396 * 109.47024 * 179.97438 * 8 6 5 10 10 C 1.76199 * 103.00044 * 179.97438 * 9 8 6 11 11 C 1.38939 * 120.08359 * 0.02562 * 10 9 8 12 12 C 1.38099 * 119.93443 * 179.97438 * 11 10 9 13 13 C 1.38307 * 120.09693 * 0.02562 * 12 11 10 14 14 C 1.38295 * 120.17021 * 359.97438 * 13 12 11 15 15 C 1.38187 * 120.06312 * 0.02562 * 14 13 12 16 16 Cl 1.73599 * 120.04972 * 180.02562 * 15 14 13 17 17 N 1.35259 * 107.56787 * 359.64136 * 4 3 2 18 18 C 1.46500 * 126.04452 * 180.22877 * 17 4 3 19 19 C 1.50703 * 109.47206 * 89.99689 * 18 17 4 20 20 H 1.07996 * 119.99981 * 0.02562 * 19 18 17 21 21 C 1.37873 * 119.99750 * 179.97438 * 19 18 17 22 22 N 1.31510 * 120.00361 * 0.02562 * 21 19 18 23 23 Si 1.86811 * 119.99897 * 179.97438 * 21 19 18 24 24 H 1.48498 * 109.46703 * 0.02562 * 23 21 19 25 25 H 1.48502 * 109.47078 * 120.00117 * 23 21 19 26 26 H 1.48500 * 109.47098 * 240.00554 * 23 21 19 27 27 N 1.30853 * 125.83806 * 179.73641 * 2 1 3 28 28 H 1.08999 * 109.47393 * 270.24028 * 1 2 3 29 29 H 1.09001 * 109.46843 * 30.24147 * 1 2 3 30 30 H 1.09002 * 109.47002 * 150.24131 * 1 2 3 31 31 H 1.08001 * 126.08255 * 0.02562 * 3 2 1 32 32 H 0.96999 * 120.00215 * 179.68838 * 5 4 3 33 33 H 1.09000 * 109.47219 * 59.99491 * 8 6 5 34 34 H 1.09004 * 109.46860 * 299.99504 * 8 6 5 35 35 H 1.07999 * 120.03745 * 359.95335 * 11 10 9 36 36 H 1.07997 * 119.95486 * 180.02562 * 12 11 10 37 37 H 1.08003 * 119.91744 * 180.02562 * 13 12 11 38 38 H 1.07997 * 119.97026 * 179.72497 * 14 13 12 39 39 H 1.09000 * 109.46719 * 209.99705 * 18 17 4 40 40 H 1.09003 * 109.47363 * 329.99412 * 18 17 4 41 41 H 0.97004 * 120.00288 * 179.97438 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3253 1.1329 0.0000 4 6 3.6197 0.7121 -0.0032 5 7 4.7513 1.5273 -0.0062 6 6 4.6157 2.8683 -0.0124 7 8 3.5097 3.3660 -0.0158 8 6 5.8384 3.7493 -0.0162 9 16 5.3293 5.4903 -0.0251 10 6 6.8658 6.3526 -0.0280 11 6 8.0616 5.6450 -0.0241 12 6 9.2641 6.3240 -0.0268 13 6 9.2797 7.7070 -0.0330 14 6 8.0920 8.4155 -0.0369 15 6 6.8848 7.7430 -0.0342 16 17 5.3941 8.6326 -0.0398 17 7 3.6092 -0.6405 0.0030 18 6 4.7870 -1.5117 0.0071 19 6 5.1908 -1.8039 1.4293 20 1 4.6263 -1.3831 2.2482 21 6 6.2803 -2.6092 1.6849 22 7 6.9674 -3.1220 0.6877 23 14 6.7814 -2.9709 3.4478 24 1 5.8530 -2.2793 4.3780 25 1 6.7230 -4.4351 3.6886 26 1 8.1659 -2.4861 3.6783 27 7 2.2731 -1.0608 0.0049 28 1 -0.3634 0.0043 1.0276 29 1 -0.3633 0.8878 -0.5176 30 1 -0.3633 -0.8922 -0.5101 31 1 1.9902 2.1596 0.0004 32 1 5.6359 1.1293 -0.0037 33 1 6.4338 3.5406 -0.9051 34 1 6.4334 3.5489 0.8749 35 1 8.0507 4.5651 -0.0185 36 1 10.1937 5.7744 -0.0242 37 1 10.2218 8.2351 -0.0356 38 1 8.1079 9.4953 -0.0373 39 1 4.5498 -2.4456 -0.5025 40 1 5.6084 -1.0146 -0.5091 41 1 7.7342 -3.6883 0.8676 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000058226746.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:08:08 Heat of formation + Delta-G solvation = 62.901926 kcal Electronic energy + Delta-G solvation = -26390.219269 eV Core-core repulsion = 22424.069203 eV Total energy + Delta-G solvation = -3966.150066 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 365.071 amu Computer time = 0.81 seconds Orbital eigenvalues (eV) -40.94842 -39.45487 -39.26345 -36.74254 -34.87442 -33.84183 -32.18820 -31.89134 -31.08537 -30.54891 -29.09062 -27.84475 -26.08923 -23.37440 -23.25922 -22.91719 -21.73010 -19.87518 -19.50876 -18.31328 -17.07327 -16.90094 -16.75948 -16.46628 -15.91616 -15.88863 -15.18531 -14.91318 -14.53214 -14.39861 -14.16142 -14.05778 -14.04349 -13.61436 -13.12179 -12.91438 -12.80132 -12.54966 -12.20663 -12.08474 -11.89823 -11.86136 -11.81234 -11.63238 -11.30401 -11.11907 -10.96548 -10.49859 -10.40511 -10.37594 -10.18222 -10.09423 -9.84781 -9.62049 -9.22178 -8.78656 -7.99018 -7.69464 -7.51822 -6.39561 -4.48241 0.67311 0.78293 0.92167 1.75137 2.07260 2.08630 2.71271 2.99631 3.10323 3.15428 3.19872 3.25733 3.52479 3.69099 4.18955 4.30684 4.39604 4.53500 4.62136 4.79942 4.83895 4.91826 4.93930 5.05621 5.31454 5.34453 5.58018 5.61918 5.76260 5.98155 6.01789 6.08938 6.10878 6.18979 6.30551 6.33573 6.58837 6.76697 6.98020 7.40532 7.49586 7.54941 7.72894 7.78192 8.13170 8.55620 8.64751 9.19848 10.67506 Molecular weight = 365.07amu Principal moments of inertia in cm(-1) A = 0.009439 B = 0.002548 C = 0.002089 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2965.809895 B =10987.090695 C =13403.407938 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.063 4.063 2 C 0.051 3.949 3 C -0.292 4.292 4 C 0.299 3.701 5 N -0.633 5.633 6 C 0.539 3.461 7 O -0.495 6.495 8 C -0.161 4.161 9 S 0.010 5.990 10 C -0.098 4.098 11 C -0.127 4.127 12 C -0.093 4.093 13 C -0.118 4.118 14 C -0.092 4.092 15 C -0.024 4.024 16 Cl -0.053 7.053 17 N -0.343 5.343 18 C 0.256 3.744 19 C -0.541 4.541 20 H 0.066 0.934 21 C 0.067 3.933 22 N -0.890 5.890 23 Si 0.905 3.095 24 H -0.271 1.271 25 H -0.279 1.279 26 H -0.280 1.280 27 N -0.283 5.283 28 H 0.069 0.931 29 H 0.070 0.930 30 H 0.066 0.934 31 H 0.162 0.838 32 H 0.418 0.582 33 H 0.123 0.877 34 H 0.125 0.875 35 H 0.134 0.866 36 H 0.133 0.867 37 H 0.133 0.867 38 H 0.137 0.863 39 H 0.057 0.943 40 H 0.044 0.956 41 H 0.269 0.731 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.609 21.220 -3.095 21.934 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.121 4.121 2 C -0.113 4.113 3 C -0.324 4.324 4 C 0.077 3.923 5 N -0.280 5.280 6 C 0.323 3.677 7 O -0.368 6.368 8 C -0.312 4.312 9 S 0.255 5.745 10 C -0.212 4.212 11 C -0.151 4.151 12 C -0.113 4.113 13 C -0.139 4.139 14 C -0.112 4.112 15 C -0.057 4.057 16 Cl -0.024 7.024 17 N -0.128 5.128 18 C 0.138 3.862 19 C -0.579 4.579 20 H 0.084 0.916 21 C -0.137 4.137 22 N -0.527 5.527 23 Si 0.732 3.268 24 H -0.195 1.195 25 H -0.205 1.205 26 H -0.206 1.206 27 N -0.108 5.108 28 H 0.087 0.913 29 H 0.089 0.911 30 H 0.085 0.915 31 H 0.179 0.821 32 H 0.255 0.745 33 H 0.142 0.858 34 H 0.143 0.857 35 H 0.151 0.849 36 H 0.150 0.850 37 H 0.151 0.849 38 H 0.155 0.845 39 H 0.075 0.925 40 H 0.062 0.938 41 H 0.078 0.922 Dipole moment (debyes) X Y Z Total from point charges 2.793 20.508 -3.148 20.936 hybrid contribution 2.449 -0.253 0.976 2.648 sum 5.242 20.255 -2.173 21.035 Atomic orbital electron populations 1.20027 0.87490 1.02396 1.02222 1.22041 0.96577 0.90972 1.01755 1.21282 0.89022 1.00548 1.21535 1.17850 0.87735 0.83370 1.03341 1.42548 1.08611 1.05053 1.71816 1.19335 0.89805 0.81439 0.77105 1.90703 1.25922 1.73271 1.46900 1.23860 1.01276 0.97403 1.08643 1.86568 1.01559 0.95657 1.90700 1.22089 0.99301 0.95310 1.04474 1.21222 0.91206 1.00072 1.02641 1.21199 0.97873 0.94521 0.97681 1.21151 0.97778 0.94198 1.00814 1.21021 0.90329 1.00506 0.99311 1.20373 0.88306 0.90126 1.06935 1.98392 1.32674 1.74601 1.96701 1.49364 1.06603 1.02067 1.54803 1.19639 0.77778 0.89815 0.98961 1.21382 1.13272 1.31925 0.91327 0.91621 1.24937 0.95702 0.94822 0.98216 1.69922 1.19150 1.32549 1.31101 0.86310 0.78336 0.78529 0.83615 1.19513 1.20480 1.20626 1.77373 0.86059 1.21766 1.25609 0.91256 0.91078 0.91511 0.82056 0.74515 0.85849 0.85714 0.84867 0.84952 0.84880 0.84521 0.92469 0.93837 0.92180 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.06 -0.92 10.44 36.00 0.38 -0.55 16 2 C 0.05 1.02 7.21 -82.44 -0.59 0.43 16 3 C -0.29 -5.89 9.58 -39.78 -0.38 -6.27 16 4 C 0.30 6.14 7.66 -153.16 -1.17 4.96 16 5 N -0.63 -10.40 5.42 -11.46 -0.06 -10.47 16 6 C 0.54 8.00 7.81 -10.98 -0.09 7.91 16 7 O -0.49 -8.76 12.99 5.55 0.07 -8.68 16 8 C -0.16 -1.68 4.82 36.01 0.17 -1.51 16 9 S 0.01 0.12 19.97 -107.50 -2.15 -2.03 16 10 C -0.10 -1.01 6.11 -39.02 -0.24 -1.25 16 11 C -0.13 -1.09 9.36 -39.37 -0.37 -1.46 16 12 C -0.09 -0.66 10.04 -39.61 -0.40 -1.06 16 13 C -0.12 -0.79 10.04 -39.53 -0.40 -1.19 16 14 C -0.09 -0.72 9.82 -39.58 -0.39 -1.11 16 15 C -0.02 -0.24 6.34 -39.30 -0.25 -0.49 16 16 Cl -0.05 -0.55 27.84 -51.86 -1.44 -1.99 16 17 N -0.34 -7.87 3.60 -61.57 -0.22 -8.09 16 18 C 0.26 6.22 6.01 -5.19 -0.03 6.19 16 19 C -0.54 -14.19 9.39 -34.44 -0.32 -14.51 16 20 H 0.07 1.81 7.81 -52.49 -0.41 1.40 16 21 C 0.07 1.74 5.46 -17.82 -0.10 1.64 16 22 N -0.89 -23.75 13.29 55.43 0.74 -23.02 16 23 Si 0.91 20.25 29.54 -169.99 -5.02 15.22 16 24 H -0.27 -6.13 7.11 56.52 0.40 -5.73 16 25 H -0.28 -6.25 7.11 56.52 0.40 -5.85 16 26 H -0.28 -6.08 7.11 56.52 0.40 -5.68 16 27 N -0.28 -6.50 12.56 33.65 0.42 -6.07 16 28 H 0.07 0.94 8.14 -51.93 -0.42 0.52 16 29 H 0.07 0.90 8.14 -51.93 -0.42 0.47 16 30 H 0.07 0.92 8.14 -51.93 -0.42 0.50 16 31 H 0.16 3.17 5.83 -52.49 -0.31 2.86 16 32 H 0.42 6.14 7.96 -40.82 -0.33 5.82 16 33 H 0.12 0.98 7.75 -51.92 -0.40 0.58 16 34 H 0.12 1.06 7.75 -51.92 -0.40 0.66 16 35 H 0.13 0.93 5.88 -52.49 -0.31 0.62 16 36 H 0.13 0.66 8.06 -52.49 -0.42 0.23 16 37 H 0.13 0.55 8.06 -52.48 -0.42 0.13 16 38 H 0.14 0.80 8.06 -52.49 -0.42 0.37 16 39 H 0.06 1.51 8.14 -51.93 -0.42 1.08 16 40 H 0.04 1.01 7.50 -51.93 -0.39 0.62 16 41 H 0.27 6.76 8.31 -40.82 -0.34 6.42 16 LS Contribution 382.16 15.07 5.76 5.76 Total: -1.00 -31.86 382.16 -10.72 -42.58 By element: Atomic # 1 Polarization: 9.68 SS G_CDS: -4.64 Total: 5.04 kcal Atomic # 6 Polarization: -4.08 SS G_CDS: -4.18 Total: -8.25 kcal Atomic # 7 Polarization: -48.52 SS G_CDS: 0.88 Total: -47.65 kcal Atomic # 8 Polarization: -8.76 SS G_CDS: 0.07 Total: -8.68 kcal Atomic # 14 Polarization: 20.25 SS G_CDS: -5.02 Total: 15.22 kcal Atomic # 16 Polarization: 0.12 SS G_CDS: -2.15 Total: -2.03 kcal Atomic # 17 Polarization: -0.55 SS G_CDS: -1.44 Total: -1.99 kcal Total LS contribution 5.76 Total: 5.76 kcal Total: -31.86 -10.72 -42.58 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000058226746.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 105.481 kcal (2) G-P(sol) polarization free energy of solvation -31.859 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 73.621 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.720 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.579 kcal (6) G-S(sol) free energy of system = (1) + (5) 62.902 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.81 seconds