Wall clock time and date at job start Tue Mar 31 2020 06:33:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42901 * 1 3 3 C 1.36035 * 116.99678 * 2 1 4 4 C 1.38487 * 120.07013 * 359.72306 * 3 2 1 5 5 C 1.38288 * 120.03337 * 179.74730 * 4 3 2 6 6 C 1.38361 * 120.16109 * 0.55356 * 5 4 3 7 7 Cl 1.73607 * 119.93173 * 179.72278 * 6 5 4 8 8 C 1.38317 * 120.13765 * 359.70107 * 6 5 4 9 9 C 1.38723 * 119.96480 * 0.02562 * 8 6 5 10 10 N 1.39959 * 120.07968 * 179.97438 * 9 8 6 11 11 C 1.46505 * 120.00138 * 0.02562 * 10 9 8 12 12 C 1.53005 * 109.46928 * 180.02562 * 11 10 9 13 13 C 1.50703 * 109.46836 * 179.97438 * 12 11 10 14 14 O 1.21278 * 120.00149 * 0.02562 * 13 12 11 15 15 N 1.34775 * 120.00108 * 179.97438 * 13 12 11 16 16 C 1.46491 * 120.00339 * 179.97438 * 15 13 12 17 17 C 1.50702 * 109.47145 * 90.00299 * 16 15 13 18 18 H 1.08005 * 119.99932 * 359.97438 * 17 16 15 19 19 C 1.37872 * 120.00379 * 180.02562 * 17 16 15 20 20 N 1.31517 * 119.99947 * 359.97438 * 19 17 16 21 21 Si 1.86804 * 120.00363 * 180.02562 * 19 17 16 22 22 H 1.48494 * 109.47005 * 59.99626 * 21 19 17 23 23 H 1.48501 * 109.47164 * 179.97438 * 21 19 17 24 24 H 1.48499 * 109.46488 * 299.99610 * 21 19 17 25 25 C 1.46501 * 119.99835 * 0.02562 * 15 13 12 26 26 C 1.52998 * 109.47253 * 89.99361 * 25 15 13 27 27 C 1.47202 * 109.47100 * 179.97438 * 26 25 15 28 28 N 8.20929 * 127.49666 * 192.79311 * 2 1 3 29 29 H 1.08999 * 109.47144 * 300.00172 * 1 2 3 30 30 H 1.08998 * 109.47043 * 59.99770 * 1 2 3 31 31 H 1.08996 * 109.46732 * 180.02562 * 1 2 3 32 32 H 1.08001 * 119.98483 * 0.02562 * 4 3 2 33 33 H 1.07995 * 119.91867 * 180.27452 * 5 4 3 34 34 H 1.07996 * 120.01548 * 180.02562 * 8 6 5 35 35 H 0.97004 * 119.99937 * 180.02562 * 10 9 8 36 36 H 1.09002 * 109.46662 * 299.99397 * 11 10 9 37 37 H 1.08995 * 109.47364 * 59.99978 * 11 10 9 38 38 H 1.08994 * 109.47010 * 299.99431 * 12 11 10 39 39 H 1.08995 * 109.47219 * 59.99763 * 12 11 10 40 40 H 1.09002 * 109.47639 * 210.00118 * 16 15 13 41 41 H 1.08998 * 109.47169 * 330.00449 * 16 15 13 42 42 H 0.96995 * 120.00426 * 180.02562 * 20 19 17 43 43 H 1.09001 * 109.47117 * 209.99828 * 25 15 13 44 44 H 1.09005 * 109.47107 * 329.99889 * 25 15 13 45 45 H 1.09001 * 109.47440 * 300.00269 * 26 25 15 46 46 H 1.09001 * 109.46880 * 60.00689 * 26 25 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0465 1.2121 0.0000 4 6 1.2936 2.3744 -0.0058 5 6 1.9221 3.6062 -0.0005 6 6 3.3037 3.6818 -0.0010 7 17 4.0865 5.2313 -0.0016 8 6 4.0624 2.5253 -0.0005 9 6 3.4376 1.2867 -0.0001 10 7 4.2030 0.1149 -0.0002 11 6 5.6658 0.1954 -0.0001 12 6 6.2543 -1.2169 -0.0008 13 6 7.7591 -1.1341 -0.0014 14 8 8.3068 -0.0520 -0.0008 15 7 8.4961 -2.2624 -0.0016 16 6 9.9588 -2.1820 -0.0027 17 6 10.4615 -2.1539 1.4177 18 1 9.7613 -2.1919 2.2392 19 6 11.8151 -2.0789 1.6687 20 7 12.6677 -2.0322 0.6685 21 14 12.4382 -2.0449 3.4294 22 1 12.0116 -3.2831 4.1294 23 1 13.9209 -1.9632 3.4283 24 1 11.8773 -0.8618 4.1301 25 6 7.8345 -3.5695 -0.0018 26 6 7.6040 -4.0243 -1.4443 27 6 6.9397 -5.3379 -1.4445 28 7 6.4261 -6.3515 -1.4422 29 1 -0.3633 0.5139 0.8900 30 1 -0.3633 0.5139 -0.8900 31 1 -0.3633 -1.0277 0.0005 32 1 0.2151 2.3189 -0.0099 33 1 1.3332 4.5114 -0.0006 34 1 5.1406 2.5865 -0.0005 35 1 3.7649 -0.7506 -0.0002 36 1 6.0003 0.7285 -0.8901 37 1 6.0004 0.7284 0.8899 38 1 5.9198 -1.7503 0.8889 39 1 5.9198 -1.7495 -0.8910 40 1 10.3702 -3.0508 -0.5166 41 1 10.2723 -1.2735 -0.5170 42 1 13.6200 -1.9798 0.8450 43 1 8.4644 -4.2957 0.5119 44 1 6.8763 -3.4918 0.5121 45 1 6.9740 -3.2981 -1.9580 46 1 8.5621 -4.1021 -1.9582 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000058282951.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:33:47 Heat of formation + Delta-G solvation = -46.941978 kcal Electronic energy + Delta-G solvation = -29344.762883 eV Core-core repulsion = 25066.929851 eV Total energy + Delta-G solvation = -4277.833032 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 365.129 amu Computer time = 1.07 seconds Orbital eigenvalues (eV) -41.27214 -40.77021 -38.65573 -38.00294 -37.53776 -36.74231 -36.39650 -34.86280 -32.77830 -32.09645 -31.00101 -29.91704 -28.71137 -27.92164 -25.69010 -25.27886 -23.96111 -23.08218 -22.28196 -20.03241 -19.19063 -18.78504 -18.31866 -18.07443 -18.00601 -17.16503 -16.96750 -16.77989 -16.49179 -16.20014 -15.92334 -15.63549 -15.43865 -15.26728 -15.12853 -14.69469 -14.51980 -14.37033 -14.19087 -13.99071 -13.58774 -13.50967 -13.33194 -13.27960 -13.03836 -12.90470 -12.86816 -12.71661 -12.55308 -12.49284 -12.37852 -12.16270 -12.14547 -11.81427 -11.77340 -11.67373 -11.58960 -10.96073 -10.58562 -10.57117 -9.46969 -9.45459 -8.18827 -8.16923 -6.28979 0.25250 0.46976 1.24028 1.40745 1.43597 1.50031 1.70138 1.86568 1.89896 2.12348 2.36429 2.43670 2.63697 2.71084 3.14074 3.20635 3.75179 3.82964 3.93756 4.08693 4.10478 4.11806 4.18695 4.27828 4.42548 4.49140 4.50248 4.55253 4.60674 4.70705 4.80509 4.85513 4.86759 4.94900 4.96878 5.09578 5.15809 5.25679 5.36111 5.36569 5.58180 5.62458 5.89202 6.02590 6.14386 6.50647 6.63113 6.74759 6.82851 6.87548 7.35516 7.52701 8.89527 Molecular weight = 365.13amu Principal moments of inertia in cm(-1) A = 0.008006 B = 0.002401 C = 0.001958 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3496.705943 B =11659.989092 C =14297.524760 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.021 3.979 2 O -0.331 6.331 3 C 0.055 3.945 4 C -0.148 4.148 5 C -0.133 4.133 6 C -0.031 4.031 7 Cl -0.080 7.080 8 C -0.177 4.177 9 C 0.197 3.803 10 N -0.731 5.731 11 C 0.147 3.853 12 C -0.138 4.138 13 C 0.506 3.494 14 O -0.588 6.588 15 N -0.597 5.597 16 C 0.259 3.741 17 C -0.540 4.540 18 H 0.054 0.946 19 C 0.011 3.989 20 N -0.926 5.926 21 Si 0.955 3.045 22 H -0.263 1.263 23 H -0.283 1.283 24 H -0.279 1.279 25 C 0.113 3.887 26 C -0.039 4.039 27 C 0.246 3.754 28 N -0.490 5.490 29 H 0.064 0.936 30 H 0.065 0.935 31 H 0.115 0.885 32 H 0.165 0.835 33 H 0.149 0.851 34 H 0.128 0.872 35 H 0.414 0.586 36 H 0.057 0.943 37 H 0.047 0.953 38 H 0.121 0.879 39 H 0.133 0.867 40 H 0.034 0.966 41 H 0.004 0.996 42 H 0.265 0.735 43 H 0.082 0.918 44 H 0.110 0.890 45 H 0.139 0.861 46 H 0.118 0.882 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -27.141 4.880 -3.493 27.797 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.073 4.073 2 O -0.245 6.245 3 C 0.006 3.994 4 C -0.167 4.167 5 C -0.154 4.154 6 C -0.059 4.059 7 Cl -0.051 7.051 8 C -0.202 4.202 9 C 0.093 3.907 10 N -0.363 5.363 11 C 0.022 3.978 12 C -0.178 4.178 13 C 0.295 3.705 14 O -0.469 6.469 15 N -0.327 5.327 16 C 0.138 3.862 17 C -0.579 4.579 18 H 0.072 0.928 19 C -0.188 4.188 20 N -0.566 5.566 21 Si 0.781 3.219 22 H -0.188 1.188 23 H -0.209 1.209 24 H -0.205 1.205 25 C -0.012 4.012 26 C -0.080 4.080 27 C -0.071 4.071 28 N -0.168 5.168 29 H 0.083 0.917 30 H 0.084 0.916 31 H 0.133 0.867 32 H 0.182 0.818 33 H 0.167 0.833 34 H 0.146 0.854 35 H 0.251 0.749 36 H 0.075 0.925 37 H 0.066 0.934 38 H 0.139 0.861 39 H 0.151 0.849 40 H 0.052 0.948 41 H 0.022 0.978 42 H 0.074 0.926 43 H 0.100 0.900 44 H 0.128 0.872 45 H 0.157 0.843 46 H 0.136 0.864 Dipole moment (debyes) X Y Z Total from point charges -27.057 3.873 -3.532 27.560 hybrid contribution 1.195 0.547 0.849 1.564 sum -25.862 4.419 -2.683 26.374 Atomic orbital electron populations 1.23306 0.76380 1.05398 1.02246 1.85977 1.23319 1.25732 1.89498 1.18570 0.89933 0.86014 1.04878 1.21212 1.01202 0.90211 1.04110 1.20821 0.91524 0.99013 1.04033 1.20634 0.93250 0.85770 1.06213 1.98360 1.81392 1.28287 1.97064 1.20390 1.00222 0.89678 1.09872 1.17069 0.87788 0.87388 0.98488 1.44380 1.04147 1.05641 1.82146 1.20835 0.79093 0.96515 1.01322 1.21799 0.89836 0.98664 1.07460 1.20987 0.90360 0.83468 0.75714 1.90698 1.74956 1.29593 1.51608 1.48063 1.07475 1.05762 1.71380 1.18797 0.75387 0.96477 0.95558 1.21739 0.92029 1.50466 0.93628 0.92765 1.25710 0.97199 0.94862 1.01023 1.70012 1.02768 1.51189 1.32641 0.85650 0.77096 0.78843 0.80329 1.18779 1.20871 1.20514 1.21543 0.99848 0.84642 0.95155 1.19847 1.02163 0.85981 0.99963 1.29167 0.91951 0.94290 0.91714 1.81271 1.12086 1.13428 1.10039 0.91737 0.91606 0.86703 0.81801 0.83285 0.85448 0.74939 0.92496 0.93432 0.86116 0.84882 0.94780 0.97754 0.92608 0.89991 0.87151 0.84341 0.86368 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.16 9.81 113.37 1.11 1.27 16 2 O -0.33 -5.12 9.74 -93.94 -0.92 -6.03 16 3 C 0.05 1.00 6.70 22.59 0.15 1.15 16 4 C -0.15 -2.19 9.04 22.34 0.20 -1.99 16 5 C -0.13 -2.25 9.82 22.31 0.22 -2.03 16 6 C -0.03 -0.68 6.32 22.32 0.14 -0.54 16 7 Cl -0.08 -1.74 28.95 -2.72 -0.08 -1.82 16 8 C -0.18 -4.23 9.09 22.40 0.20 -4.02 16 9 C 0.20 4.28 6.67 38.22 0.25 4.54 16 10 N -0.73 -14.34 5.73 -338.97 -1.94 -16.28 16 11 C 0.15 3.43 4.21 86.38 0.36 3.80 16 12 C -0.14 -2.77 4.37 29.85 0.13 -2.64 16 13 C 0.51 16.95 7.67 87.66 0.67 17.62 16 14 O -0.59 -26.57 15.56 -3.02 -0.05 -26.62 16 15 N -0.60 -20.12 2.46 -826.17 -2.03 -22.15 16 16 C 0.26 12.19 5.16 85.64 0.44 12.63 16 17 C -0.54 -28.69 9.39 25.60 0.24 -28.45 16 18 H 0.05 2.85 7.81 -2.91 -0.02 2.82 16 19 C 0.01 0.62 5.46 84.65 0.46 1.08 16 20 N -0.93 -53.47 13.29 21.45 0.28 -53.18 16 21 Si 0.96 43.39 29.54 68.60 2.03 45.42 16 22 H -0.26 -11.27 7.11 99.48 0.71 -10.57 16 23 H -0.28 -12.64 7.11 99.48 0.71 -11.93 16 24 H -0.28 -12.76 7.11 99.48 0.71 -12.06 16 25 C 0.11 2.50 5.17 86.38 0.45 2.95 16 26 C -0.04 -0.63 6.03 28.79 0.17 -0.45 16 27 C 0.25 4.97 15.43 89.44 1.38 6.35 16 28 N -0.49 -12.97 18.54 20.01 0.37 -12.59 16 29 H 0.06 0.36 7.67 -2.39 -0.02 0.34 16 30 H 0.07 0.35 7.65 -2.39 -0.02 0.33 16 31 H 0.11 0.48 8.14 -2.39 -0.02 0.46 16 32 H 0.16 1.35 6.29 -2.91 -0.02 1.33 16 33 H 0.15 1.88 8.06 -2.91 -0.02 1.86 16 34 H 0.13 3.34 6.74 -2.91 -0.02 3.32 16 35 H 0.41 6.59 7.84 -92.71 -0.73 5.87 16 36 H 0.06 1.49 7.91 -2.39 -0.02 1.47 16 37 H 0.05 1.34 7.91 -2.39 -0.02 1.32 16 38 H 0.12 1.92 7.40 -2.39 -0.02 1.90 16 39 H 0.13 1.66 7.19 -2.39 -0.02 1.65 16 40 H 0.03 1.59 8.07 -2.39 -0.02 1.57 16 41 H 0.00 0.24 7.42 -2.39 -0.02 0.22 16 42 H 0.27 14.57 8.31 -92.71 -0.77 13.80 16 43 H 0.08 2.08 8.07 -2.39 -0.02 2.06 16 44 H 0.11 1.73 6.44 -2.38 -0.02 1.72 16 45 H 0.14 1.46 7.22 -2.39 -0.02 1.44 16 46 H 0.12 2.04 8.14 -2.39 -0.02 2.02 16 Total: -1.00 -75.65 409.75 4.57 -71.08 By element: Atomic # 1 Polarization: 10.63 SS G_CDS: 0.30 Total: 10.93 kcal Atomic # 6 Polarization: 4.66 SS G_CDS: 6.60 Total: 11.26 kcal Atomic # 7 Polarization: -100.89 SS G_CDS: -3.32 Total: -104.21 kcal Atomic # 8 Polarization: -31.69 SS G_CDS: -0.96 Total: -32.66 kcal Atomic # 14 Polarization: 43.39 SS G_CDS: 2.03 Total: 45.42 kcal Atomic # 17 Polarization: -1.74 SS G_CDS: -0.08 Total: -1.82 kcal Total: -75.65 4.57 -71.08 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000058282951.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 24.139 kcal (2) G-P(sol) polarization free energy of solvation -75.649 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -51.509 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.567 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.081 kcal (6) G-S(sol) free energy of system = (1) + (5) -46.942 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.07 seconds