Wall clock time and date at job start Tue Mar 31 2020 05:02:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31513 * 1 3 3 Si 1.86799 * 119.99630 * 2 1 4 4 H 1.48509 * 109.46805 * 269.99603 * 3 2 1 5 5 H 1.48492 * 109.47490 * 29.99475 * 3 2 1 6 6 H 1.48498 * 109.46982 * 150.00068 * 3 2 1 7 7 C 1.37877 * 120.00326 * 179.97438 * 2 1 3 8 8 H 1.07993 * 120.00032 * 180.02562 * 7 2 1 9 9 C 1.50704 * 119.99919 * 359.97438 * 7 2 1 10 10 N 1.46492 * 109.47157 * 180.02562 * 9 7 2 11 11 C 1.46498 * 119.99925 * 79.05143 * 10 9 7 12 12 C 1.50700 * 109.47449 * 90.00109 * 11 10 9 13 13 C 1.38672 * 120.41777 * 269.72380 * 12 11 10 14 14 C 1.38626 * 118.41972 * 179.77952 * 13 12 11 15 15 C 1.38227 * 119.16342 * 0.50965 * 14 13 12 16 16 N 1.31859 * 120.76249 * 359.72806 * 15 14 13 17 17 C 1.31885 * 121.72288 * 359.97438 * 16 15 14 18 18 C 1.34777 * 120.00023 * 259.33086 * 10 9 7 19 19 O 1.21576 * 119.99740 * 181.10973 * 18 10 9 20 20 C 1.47692 * 120.00320 * 1.10297 * 18 10 9 21 21 C 1.39692 * 120.07706 * 23.52575 * 20 18 10 22 22 C 1.37749 * 119.91950 * 179.69329 * 21 20 18 23 23 C 1.39012 * 120.07896 * 0.58157 * 22 21 20 24 24 N 1.39980 * 119.92145 * 179.69133 * 23 22 21 25 25 C 1.35128 * 127.39103 * 359.73708 * 24 23 22 26 26 N 1.30714 * 107.26754 * 179.89399 * 25 24 23 27 27 N 1.28426 * 110.65111 * 0.38181 * 26 25 24 28 28 N 1.28950 * 110.21602 * 359.75844 * 27 26 25 29 29 C 1.39020 * 120.16428 * 359.71751 * 23 22 21 30 30 C 1.37753 * 120.07465 * 359.97438 * 29 23 22 31 31 H 0.97001 * 120.00664 * 0.02562 * 1 2 3 32 32 H 1.09001 * 109.46639 * 60.00452 * 9 7 2 33 33 H 1.08998 * 109.47324 * 300.00233 * 9 7 2 34 34 H 1.09002 * 109.47383 * 209.99927 * 11 10 9 35 35 H 1.08996 * 109.47487 * 329.99662 * 11 10 9 36 36 H 1.07997 * 120.79031 * 0.02562 * 13 12 11 37 37 H 1.08000 * 120.42113 * 180.21867 * 14 13 12 38 38 H 1.08000 * 119.62462 * 179.75094 * 15 14 13 39 39 H 1.07998 * 119.61710 * 179.97438 * 17 16 15 40 40 H 1.08007 * 120.04005 * 0.02562 * 21 20 18 41 41 H 1.08002 * 119.95979 * 180.29421 * 22 21 20 42 42 H 1.07998 * 126.36894 * 0.02562 * 25 24 23 43 43 H 1.07994 * 119.96281 * 179.97438 * 29 23 22 44 44 H 1.08003 * 120.03669 * 180.02562 * 30 29 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2490 1.6178 0.0000 4 1 2.4966 2.0464 -1.4002 5 1 1.4465 2.6527 0.6999 6 1 3.5466 1.4403 0.7000 7 6 2.0046 -1.1940 0.0005 8 1 3.0845 -1.1940 0.0010 9 6 1.2511 -2.4992 0.0017 10 7 2.2031 -3.6126 0.0027 11 6 2.8623 -4.0116 1.2487 12 6 2.0281 -5.0547 1.9466 13 6 1.0566 -4.6795 2.8623 14 6 0.3102 -5.6731 3.4766 15 6 0.5644 -6.9958 3.1663 16 7 1.4999 -7.3161 2.2939 17 6 2.2251 -6.3974 1.6861 18 6 2.4768 -4.2662 -1.1437 19 8 3.2515 -5.2032 -1.1392 20 6 1.8355 -3.8445 -2.4055 21 6 1.3599 -2.5386 -2.5468 22 6 0.7681 -2.1469 -3.7273 23 6 0.6328 -3.0527 -4.7731 24 7 0.0250 -2.6529 -5.9690 25 6 -0.4835 -1.4363 -6.2643 26 7 -0.9506 -1.4966 -7.4836 27 7 -0.7796 -2.6700 -7.9767 28 7 -0.1928 -3.4328 -7.1184 29 6 1.0993 -4.3549 -4.6340 30 6 1.6979 -4.7519 -3.4585 31 1 -0.4851 0.8400 -0.0004 32 1 0.6242 -2.5575 -0.8881 33 1 0.6248 -2.5564 0.8919 34 1 3.8458 -4.4240 1.0236 35 1 2.9726 -3.1417 1.8961 36 1 0.8830 -3.6379 3.0885 37 1 -0.4571 -5.4171 4.1923 38 1 -0.0099 -7.7761 3.6435 39 1 2.9828 -6.6980 0.9776 40 1 1.4611 -1.8354 -1.7333 41 1 0.4044 -1.1360 -3.8389 42 1 -0.4990 -0.5738 -5.6145 43 1 0.9922 -5.0561 -5.4483 44 1 2.0605 -5.7636 -3.3513 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000058290555.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:02:48 Heat of formation + Delta-G solvation = 182.539444 kcal Electronic energy + Delta-G solvation = -31765.096014 eV Core-core repulsion = 27493.825211 eV Total energy + Delta-G solvation = -4271.270802 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 364.139 amu Computer time = 2.19 seconds Orbital eigenvalues (eV) -43.25632 -40.46263 -39.78937 -38.36303 -35.77495 -35.05552 -33.44658 -32.45172 -32.32477 -31.63185 -30.86822 -30.09551 -27.95441 -26.57381 -25.09250 -23.92875 -23.58726 -23.17719 -22.55770 -21.73305 -21.51174 -19.36166 -18.60233 -17.17953 -17.06763 -16.70221 -16.65146 -16.21053 -16.08352 -15.90553 -15.26618 -14.91724 -14.76831 -14.42949 -14.28782 -13.97975 -13.52593 -13.48380 -13.36812 -13.28017 -12.93240 -12.87487 -12.76380 -12.65800 -12.28212 -11.90581 -11.60069 -11.51034 -11.34407 -11.16522 -11.13712 -11.12153 -10.58831 -10.57363 -10.16993 -10.08383 -9.69914 -9.47723 -9.31548 -9.07284 -8.89623 -8.78988 -8.47898 -8.07626 -6.58223 -4.70444 0.18839 1.22246 1.38289 1.44493 1.48416 1.70985 2.16978 2.98874 3.08398 3.09593 3.14089 3.53491 3.93288 3.98228 4.02510 4.08877 4.22535 4.59766 4.70910 4.73992 4.84885 4.89542 5.00934 5.03126 5.08918 5.17830 5.22942 5.27253 5.36785 5.52032 5.54389 5.65197 5.80568 5.95795 6.01898 6.05378 6.14366 6.25765 6.29212 6.35204 6.48019 6.49372 6.64799 6.84889 6.86553 6.99123 7.13943 7.36749 7.58670 7.96437 8.11596 8.29416 8.40054 8.63320 8.99579 10.45102 Molecular weight = 364.14amu Principal moments of inertia in cm(-1) A = 0.007998 B = 0.003425 C = 0.002636 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3500.181920 B = 8172.322202 C =10618.380096 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.876 5.876 2 C 0.072 3.928 3 Si 0.897 3.103 4 H -0.275 1.275 5 H -0.282 1.282 6 H -0.270 1.270 7 C -0.553 4.553 8 H 0.070 0.930 9 C 0.206 3.794 10 N -0.581 5.581 11 C 0.162 3.838 12 C -0.148 4.148 13 C -0.058 4.058 14 C -0.179 4.179 15 C 0.090 3.910 16 N -0.492 5.492 17 C 0.117 3.883 18 C 0.557 3.443 19 O -0.560 6.560 20 C -0.123 4.123 21 C -0.078 4.078 22 C -0.132 4.132 23 C 0.136 3.864 24 N -0.319 5.319 25 C 0.229 3.771 26 N -0.335 5.335 27 N -0.042 5.042 28 N -0.080 5.080 29 C -0.126 4.126 30 C -0.047 4.047 31 H 0.272 0.728 32 H 0.066 0.934 33 H 0.037 0.963 34 H 0.087 0.913 35 H 0.095 0.905 36 H 0.138 0.862 37 H 0.131 0.869 38 H 0.150 0.850 39 H 0.159 0.841 40 H 0.226 0.774 41 H 0.137 0.863 42 H 0.241 0.759 43 H 0.140 0.860 44 H 0.142 0.858 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.015 -3.509 1.523 3.825 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.511 5.511 2 C -0.134 4.134 3 Si 0.723 3.277 4 H -0.200 1.200 5 H -0.208 1.208 6 H -0.194 1.194 7 C -0.590 4.590 8 H 0.089 0.911 9 C 0.087 3.913 10 N -0.310 5.310 11 C 0.038 3.962 12 C -0.151 4.151 13 C -0.084 4.084 14 C -0.199 4.199 15 C -0.067 4.067 16 N -0.200 5.200 17 C -0.040 4.040 18 C 0.346 3.654 19 O -0.441 6.441 20 C -0.127 4.127 21 C -0.095 4.095 22 C -0.153 4.153 23 C 0.044 3.956 24 N -0.108 5.108 25 C -0.068 4.068 26 N -0.184 5.184 27 N -0.037 5.037 28 N -0.066 5.066 29 C -0.147 4.147 30 C -0.067 4.067 31 H 0.082 0.918 32 H 0.083 0.917 33 H 0.055 0.945 34 H 0.106 0.894 35 H 0.114 0.886 36 H 0.156 0.844 37 H 0.149 0.851 38 H 0.167 0.833 39 H 0.176 0.824 40 H 0.241 0.759 41 H 0.155 0.845 42 H 0.257 0.743 43 H 0.158 0.842 44 H 0.159 0.841 Dipole moment (debyes) X Y Z Total from point charges 0.061 -5.356 0.063 5.356 hybrid contribution 0.229 2.286 1.151 2.570 sum 0.289 -3.069 1.214 3.314 Atomic orbital electron populations 1.69925 1.06010 1.28215 1.46970 1.25020 0.94931 0.99598 0.93877 0.86489 0.80068 0.82334 0.78807 1.20018 1.20760 1.19417 1.21448 0.94313 0.90036 1.53220 0.91143 1.20381 0.88154 0.82582 1.00179 1.48077 1.43588 1.33375 1.05943 1.20173 0.94621 0.95842 0.85526 1.21398 0.99061 0.96528 0.98100 1.21644 0.92843 1.00390 0.93539 1.22112 1.01410 0.94223 1.02134 1.22719 0.94540 0.95156 0.94317 1.67720 1.06041 1.38441 1.07823 1.22866 0.96754 0.88555 0.95875 1.18164 0.81511 0.82103 0.83649 1.90690 1.37296 1.29495 1.86645 1.20186 1.02201 0.95201 0.95127 1.23947 0.89475 0.97618 0.98495 1.20989 1.03164 0.99104 0.92036 1.17959 0.99427 0.95862 0.82399 1.49077 1.39852 1.09322 1.12569 1.27520 0.93120 0.91057 0.95107 1.74462 1.22786 1.13860 1.07323 1.78040 1.08671 0.96685 1.20339 1.82627 1.18108 1.16486 0.89349 1.20719 1.00926 0.93815 0.99212 1.21126 0.94858 1.00028 0.90669 0.91806 0.91679 0.94538 0.89445 0.88640 0.84437 0.85062 0.83271 0.82377 0.75894 0.84541 0.74321 0.84247 0.84056 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.88 -19.63 13.29 55.43 0.74 -18.89 16 2 C 0.07 1.54 5.30 -17.82 -0.09 1.45 16 3 Si 0.90 17.16 29.54 -169.99 -5.02 12.14 16 4 H -0.27 -5.21 7.11 56.52 0.40 -4.81 16 5 H -0.28 -5.51 7.11 56.52 0.40 -5.11 16 6 H -0.27 -5.24 7.11 56.52 0.40 -4.84 16 7 C -0.55 -11.49 7.29 -34.44 -0.25 -11.74 16 8 H 0.07 1.50 7.81 -52.49 -0.41 1.09 16 9 C 0.21 4.00 4.63 -5.20 -0.02 3.97 16 10 N -0.58 -10.34 2.46 -177.61 -0.44 -10.78 16 11 C 0.16 2.55 5.53 -5.19 -0.03 2.52 16 12 C -0.15 -2.23 5.48 -104.48 -0.57 -2.80 16 13 C -0.06 -0.80 9.86 -39.28 -0.39 -1.18 16 14 C -0.18 -2.19 10.11 -39.44 -0.40 -2.59 16 15 C 0.09 1.16 11.18 -17.54 -0.20 0.96 16 16 N -0.49 -7.59 10.36 -13.25 -0.14 -7.73 16 17 C 0.12 1.82 10.86 -17.55 -0.19 1.63 16 18 C 0.56 10.19 7.52 -12.40 -0.09 10.10 16 19 O -0.56 -10.91 15.69 5.30 0.08 -10.83 16 20 C -0.12 -2.08 5.61 -104.95 -0.59 -2.67 16 21 C -0.08 -1.30 7.51 -39.22 -0.29 -1.59 16 22 C -0.13 -1.88 9.47 -39.47 -0.37 -2.25 16 23 C 0.14 1.90 6.71 -83.56 -0.56 1.34 16 24 N -0.32 -4.40 3.85 -11.71 -0.05 -4.45 16 25 C 0.23 2.75 12.15 -90.12 -1.09 1.65 16 26 N -0.33 -4.83 12.15 29.65 0.36 -4.47 16 27 N -0.04 -0.67 13.39 60.35 0.81 0.14 16 28 N -0.08 -1.23 13.31 60.35 0.80 -0.43 16 29 C -0.13 -1.75 9.68 -39.47 -0.38 -2.13 16 30 C -0.05 -0.70 9.58 -39.22 -0.38 -1.08 16 31 H 0.27 5.87 8.31 -40.82 -0.34 5.53 16 32 H 0.07 1.31 4.19 -51.96 -0.22 1.09 16 33 H 0.04 0.76 8.14 -51.93 -0.42 0.34 16 34 H 0.09 1.35 7.38 -51.93 -0.38 0.96 16 35 H 0.10 1.44 7.99 -51.93 -0.41 1.03 16 36 H 0.14 1.81 8.06 -52.49 -0.42 1.38 16 37 H 0.13 1.24 8.06 -52.49 -0.42 0.82 16 38 H 0.15 1.46 8.06 -52.49 -0.42 1.04 16 39 H 0.16 2.50 7.57 -52.49 -0.40 2.10 16 40 H 0.23 4.20 2.57 -52.48 -0.13 4.06 16 41 H 0.14 1.62 6.86 -52.49 -0.36 1.26 16 42 H 0.24 1.78 7.17 -52.49 -0.38 1.40 16 43 H 0.14 1.76 7.75 -52.49 -0.41 1.35 16 44 H 0.14 1.96 7.83 -52.48 -0.41 1.55 16 LS Contribution 381.56 15.07 5.75 5.75 Total: -1.00 -26.36 381.56 -7.34 -33.71 By element: Atomic # 1 Polarization: 14.58 SS G_CDS: -4.34 Total: 10.24 kcal Atomic # 6 Polarization: 1.50 SS G_CDS: -5.91 Total: -4.41 kcal Atomic # 7 Polarization: -48.69 SS G_CDS: 2.09 Total: -46.60 kcal Atomic # 8 Polarization: -10.91 SS G_CDS: 0.08 Total: -10.83 kcal Atomic # 14 Polarization: 17.16 SS G_CDS: -5.02 Total: 12.14 kcal Total LS contribution 5.75 Total: 5.75 kcal Total: -26.36 -7.34 -33.71 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000058290555.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 216.248 kcal (2) G-P(sol) polarization free energy of solvation -26.365 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 189.884 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.344 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -33.709 kcal (6) G-S(sol) free energy of system = (1) + (5) 182.539 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 2.19 seconds