Wall clock time and date at job start Tue Mar 31 2020 05:02:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31513 * 1 3 3 Si 1.86799 * 119.99630 * 2 1 4 4 H 1.48509 * 109.46805 * 269.99603 * 3 2 1 5 5 H 1.48492 * 109.47490 * 29.99475 * 3 2 1 6 6 H 1.48498 * 109.46982 * 150.00068 * 3 2 1 7 7 C 1.37877 * 120.00326 * 179.97438 * 2 1 3 8 8 H 1.07993 * 120.00032 * 180.02562 * 7 2 1 9 9 C 1.50704 * 119.99919 * 359.97438 * 7 2 1 10 10 N 1.46492 * 109.47157 * 180.02562 * 9 7 2 11 11 C 1.46498 * 119.99925 * 79.05143 * 10 9 7 12 12 C 1.50700 * 109.47449 * 90.00109 * 11 10 9 13 13 C 1.38672 * 120.41777 * 269.72380 * 12 11 10 14 14 C 1.38626 * 118.41972 * 179.77952 * 13 12 11 15 15 C 1.38227 * 119.16342 * 0.50965 * 14 13 12 16 16 N 1.31859 * 120.76249 * 359.72806 * 15 14 13 17 17 C 1.31885 * 121.72288 * 359.97438 * 16 15 14 18 18 C 1.34777 * 120.00023 * 259.33086 * 10 9 7 19 19 O 1.21576 * 119.99740 * 181.10973 * 18 10 9 20 20 C 1.47692 * 120.00320 * 1.10297 * 18 10 9 21 21 C 1.39692 * 120.07706 * 23.52575 * 20 18 10 22 22 C 1.37749 * 119.91950 * 179.69329 * 21 20 18 23 23 C 1.39012 * 120.07896 * 0.58157 * 22 21 20 24 24 N 1.39980 * 119.92145 * 179.69133 * 23 22 21 25 25 C 1.35128 * 127.39103 * 359.73708 * 24 23 22 26 26 N 1.30714 * 107.26754 * 179.89399 * 25 24 23 27 27 N 1.28426 * 110.65111 * 0.38181 * 26 25 24 28 28 N 1.28950 * 110.21602 * 359.75844 * 27 26 25 29 29 C 1.39020 * 120.16428 * 359.71751 * 23 22 21 30 30 C 1.37753 * 120.07465 * 359.97438 * 29 23 22 31 31 H 0.97001 * 120.00664 * 0.02562 * 1 2 3 32 32 H 1.09001 * 109.46639 * 60.00452 * 9 7 2 33 33 H 1.08998 * 109.47324 * 300.00233 * 9 7 2 34 34 H 1.09002 * 109.47383 * 209.99927 * 11 10 9 35 35 H 1.08996 * 109.47487 * 329.99662 * 11 10 9 36 36 H 1.07997 * 120.79031 * 0.02562 * 13 12 11 37 37 H 1.08000 * 120.42113 * 180.21867 * 14 13 12 38 38 H 1.08000 * 119.62462 * 179.75094 * 15 14 13 39 39 H 1.07998 * 119.61710 * 179.97438 * 17 16 15 40 40 H 1.08007 * 120.04005 * 0.02562 * 21 20 18 41 41 H 1.08002 * 119.95979 * 180.29421 * 22 21 20 42 42 H 1.07998 * 126.36894 * 0.02562 * 25 24 23 43 43 H 1.07994 * 119.96281 * 179.97438 * 29 23 22 44 44 H 1.08003 * 120.03669 * 180.02562 * 30 29 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2490 1.6178 0.0000 4 1 2.4966 2.0464 -1.4002 5 1 1.4465 2.6527 0.6999 6 1 3.5466 1.4403 0.7000 7 6 2.0046 -1.1940 0.0005 8 1 3.0845 -1.1940 0.0010 9 6 1.2511 -2.4992 0.0017 10 7 2.2031 -3.6126 0.0027 11 6 2.8623 -4.0116 1.2487 12 6 2.0281 -5.0547 1.9466 13 6 1.0566 -4.6795 2.8623 14 6 0.3102 -5.6731 3.4766 15 6 0.5644 -6.9958 3.1663 16 7 1.4999 -7.3161 2.2939 17 6 2.2251 -6.3974 1.6861 18 6 2.4768 -4.2662 -1.1437 19 8 3.2515 -5.2032 -1.1392 20 6 1.8355 -3.8445 -2.4055 21 6 1.3599 -2.5386 -2.5468 22 6 0.7681 -2.1469 -3.7273 23 6 0.6328 -3.0527 -4.7731 24 7 0.0250 -2.6529 -5.9690 25 6 -0.4835 -1.4363 -6.2643 26 7 -0.9506 -1.4966 -7.4836 27 7 -0.7796 -2.6700 -7.9767 28 7 -0.1928 -3.4328 -7.1184 29 6 1.0993 -4.3549 -4.6340 30 6 1.6979 -4.7519 -3.4585 31 1 -0.4851 0.8400 -0.0004 32 1 0.6242 -2.5575 -0.8881 33 1 0.6248 -2.5564 0.8919 34 1 3.8458 -4.4240 1.0236 35 1 2.9726 -3.1417 1.8961 36 1 0.8830 -3.6379 3.0885 37 1 -0.4571 -5.4171 4.1923 38 1 -0.0099 -7.7761 3.6435 39 1 2.9828 -6.6980 0.9776 40 1 1.4611 -1.8354 -1.7333 41 1 0.4044 -1.1360 -3.8389 42 1 -0.4990 -0.5738 -5.6145 43 1 0.9922 -5.0561 -5.4483 44 1 2.0605 -5.7636 -3.3513 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000058290555.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:02:47 Heat of formation + Delta-G solvation = 170.634235 kcal Electronic energy + Delta-G solvation = -31765.612262 eV Core-core repulsion = 27493.825211 eV Total energy + Delta-G solvation = -4271.787051 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 364.139 amu Computer time = 2.16 seconds Orbital eigenvalues (eV) -44.34830 -41.74510 -40.92449 -39.62804 -37.23302 -36.21250 -34.90302 -33.65874 -33.50176 -32.75920 -32.04797 -31.26860 -29.47245 -27.80801 -26.27016 -25.12326 -24.95310 -24.38121 -23.71826 -22.91657 -22.64811 -20.68185 -19.72884 -18.70128 -18.33147 -17.91279 -17.76024 -17.47040 -17.21145 -17.04075 -16.55865 -16.37822 -15.98876 -15.67771 -15.54060 -15.23888 -14.74296 -14.62830 -14.51457 -14.40611 -14.25168 -14.11643 -14.04063 -13.90753 -13.49536 -13.13717 -13.01189 -12.81597 -12.68573 -12.47738 -12.44768 -12.22499 -12.11552 -11.72466 -11.68297 -11.48372 -10.98469 -10.70864 -10.62431 -10.45277 -10.08811 -9.94605 -9.75365 -9.49086 -8.21467 -6.37197 -0.93812 0.13003 0.22276 0.29937 0.34547 0.63378 1.10201 1.47079 1.54596 1.59519 1.79355 2.21099 2.43490 2.70602 2.94697 2.97251 3.07601 3.28003 3.53384 3.59582 3.66311 3.77741 3.88908 3.92701 3.94817 4.11047 4.12061 4.16659 4.21357 4.43510 4.48521 4.48693 4.70637 4.75667 4.84362 4.89140 4.91427 4.96727 5.15285 5.18475 5.26751 5.30593 5.37165 5.44154 5.63864 5.73525 5.77030 5.79740 5.98799 6.49556 6.78221 7.01950 7.18837 7.19874 7.35946 8.81585 Molecular weight = 364.14amu Principal moments of inertia in cm(-1) A = 0.007998 B = 0.003425 C = 0.002636 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3500.181920 B = 8172.322202 C =10618.380096 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.898 5.898 2 C 0.045 3.955 3 Si 0.943 3.057 4 H -0.268 1.268 5 H -0.286 1.286 6 H -0.276 1.276 7 C -0.550 4.550 8 H 0.061 0.939 9 C 0.220 3.780 10 N -0.582 5.582 11 C 0.163 3.837 12 C -0.157 4.157 13 C -0.066 4.066 14 C -0.169 4.169 15 C 0.087 3.913 16 N -0.513 5.513 17 C 0.103 3.897 18 C 0.550 3.450 19 O -0.579 6.579 20 C -0.141 4.141 21 C -0.090 4.090 22 C -0.123 4.123 23 C 0.143 3.857 24 N -0.325 5.325 25 C 0.245 3.755 26 N -0.352 5.352 27 N -0.057 5.057 28 N -0.095 5.095 29 C -0.120 4.120 30 C -0.045 4.045 31 H 0.273 0.727 32 H 0.064 0.936 33 H 0.021 0.979 34 H 0.084 0.916 35 H 0.098 0.902 36 H 0.142 0.858 37 H 0.166 0.834 38 H 0.184 0.816 39 H 0.147 0.853 40 H 0.207 0.793 41 H 0.163 0.837 42 H 0.284 0.716 43 H 0.153 0.847 44 H 0.147 0.853 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.948 -2.863 1.698 3.461 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.535 5.535 2 C -0.159 4.159 3 Si 0.769 3.231 4 H -0.193 1.193 5 H -0.212 1.212 6 H -0.201 1.201 7 C -0.588 4.588 8 H 0.079 0.921 9 C 0.101 3.899 10 N -0.310 5.310 11 C 0.039 3.961 12 C -0.160 4.160 13 C -0.093 4.093 14 C -0.188 4.188 15 C -0.070 4.070 16 N -0.222 5.222 17 C -0.054 4.054 18 C 0.340 3.660 19 O -0.462 6.462 20 C -0.145 4.145 21 C -0.108 4.108 22 C -0.144 4.144 23 C 0.050 3.950 24 N -0.114 5.114 25 C -0.051 4.051 26 N -0.202 5.202 27 N -0.052 5.052 28 N -0.081 5.081 29 C -0.141 4.141 30 C -0.065 4.065 31 H 0.082 0.918 32 H 0.082 0.918 33 H 0.039 0.961 34 H 0.103 0.897 35 H 0.116 0.884 36 H 0.160 0.840 37 H 0.183 0.817 38 H 0.201 0.799 39 H 0.164 0.836 40 H 0.223 0.777 41 H 0.181 0.819 42 H 0.299 0.701 43 H 0.171 0.829 44 H 0.165 0.835 Dipole moment (debyes) X Y Z Total from point charges -0.893 -4.709 0.234 4.798 hybrid contribution 0.489 2.059 1.104 2.387 sum -0.404 -2.650 1.339 2.996 Atomic orbital electron populations 1.69981 1.06793 1.28657 1.48059 1.25433 0.95319 1.01385 0.93742 0.85774 0.78698 0.79824 0.78809 1.19336 1.21183 1.20100 1.21480 0.93810 0.90760 1.52768 0.92119 1.20133 0.88027 0.82555 0.99233 1.48088 1.43313 1.32963 1.06621 1.20208 0.94635 0.96227 0.84986 1.21281 0.99793 0.95993 0.98906 1.21821 0.92795 1.01212 0.93466 1.22471 1.01173 0.93467 1.01702 1.23330 0.93745 0.96539 0.93341 1.67716 1.06989 1.38698 1.08814 1.22718 0.97261 0.88943 0.96452 1.18483 0.81372 0.81852 0.84272 1.90669 1.38207 1.30299 1.87005 1.20179 1.03317 0.95939 0.95027 1.23647 0.90902 0.97175 0.99068 1.21120 1.02033 1.00264 0.90960 1.17925 0.98865 0.95769 0.82395 1.49063 1.40302 1.09880 1.12178 1.28393 0.90742 0.91299 0.94629 1.74437 1.23668 1.13541 1.08525 1.78038 1.09010 0.97298 1.20832 1.82605 1.18584 1.17014 0.89848 1.20861 0.99996 0.94189 0.99012 1.21171 0.94806 1.00027 0.90472 0.91765 0.91845 0.96142 0.89741 0.88385 0.83999 0.81651 0.79911 0.83605 0.77734 0.81926 0.70062 0.82942 0.83481 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -39.69 13.29 21.45 0.28 -39.40 16 2 C 0.05 1.91 5.30 84.65 0.45 2.36 16 3 Si 0.94 34.50 29.54 68.60 2.03 36.53 16 4 H -0.27 -9.48 7.11 99.48 0.71 -8.78 16 5 H -0.29 -10.61 7.11 99.48 0.71 -9.90 16 6 H -0.28 -10.31 7.11 99.48 0.71 -9.60 16 7 C -0.55 -22.94 7.29 25.60 0.19 -22.75 16 8 H 0.06 2.61 7.81 -2.91 -0.02 2.59 16 9 C 0.22 8.64 4.63 85.64 0.40 9.04 16 10 N -0.58 -21.18 2.46 -834.11 -2.05 -23.23 16 11 C 0.16 5.27 5.53 85.63 0.47 5.75 16 12 C -0.16 -4.80 5.48 -19.77 -0.11 -4.91 16 13 C -0.07 -1.79 9.86 22.47 0.22 -1.57 16 14 C -0.17 -3.76 10.11 22.36 0.23 -3.54 16 15 C 0.09 2.08 11.18 84.69 0.95 3.03 16 16 N -0.51 -15.62 10.36 -195.84 -2.03 -17.65 16 17 C 0.10 3.29 10.86 84.67 0.92 4.21 16 18 C 0.55 20.60 7.52 86.74 0.65 21.25 16 19 O -0.58 -23.23 15.69 -3.96 -0.06 -23.29 16 20 C -0.14 -4.74 5.61 -20.08 -0.11 -4.85 16 21 C -0.09 -2.94 7.51 22.51 0.17 -2.77 16 22 C -0.12 -3.24 9.47 22.34 0.21 -3.03 16 23 C 0.14 3.70 6.71 38.21 0.26 3.96 16 24 N -0.32 -8.20 3.85 -190.95 -0.73 -8.94 16 25 C 0.25 5.15 12.15 180.17 2.19 7.34 16 26 N -0.35 -9.43 12.15 -60.11 -0.73 -10.16 16 27 N -0.06 -1.71 13.39 37.02 0.50 -1.21 16 28 N -0.10 -2.77 13.31 37.02 0.49 -2.27 16 29 C -0.12 -3.16 9.68 22.34 0.22 -2.94 16 30 C -0.05 -1.32 9.58 22.50 0.22 -1.10 16 31 H 0.27 11.55 8.31 -92.71 -0.77 10.78 16 32 H 0.06 2.56 4.19 -2.42 -0.01 2.55 16 33 H 0.02 0.86 8.14 -2.39 -0.02 0.85 16 34 H 0.08 2.74 7.38 -2.39 -0.02 2.72 16 35 H 0.10 3.05 7.99 -2.39 -0.02 3.03 16 36 H 0.14 3.65 8.06 -2.91 -0.02 3.62 16 37 H 0.17 2.52 8.06 -2.91 -0.02 2.50 16 38 H 0.18 2.99 8.06 -2.91 -0.02 2.97 16 39 H 0.15 4.89 7.57 -2.91 -0.02 4.87 16 40 H 0.21 7.64 2.57 -2.91 -0.01 7.64 16 41 H 0.16 3.32 6.86 -2.91 -0.02 3.30 16 42 H 0.28 2.94 7.17 -2.91 -0.02 2.92 16 43 H 0.15 3.60 7.75 -2.91 -0.02 3.57 16 44 H 0.15 4.05 7.83 -2.91 -0.02 4.03 16 Total: -1.00 -56.79 381.56 6.27 -50.52 By element: Atomic # 1 Polarization: 28.58 SS G_CDS: 1.08 Total: 29.66 kcal Atomic # 6 Polarization: 1.96 SS G_CDS: 7.51 Total: 9.46 kcal Atomic # 7 Polarization: -98.60 SS G_CDS: -4.27 Total: -102.87 kcal Atomic # 8 Polarization: -23.23 SS G_CDS: -0.06 Total: -23.29 kcal Atomic # 14 Polarization: 34.50 SS G_CDS: 2.03 Total: 36.53 kcal Total: -56.79 6.27 -50.52 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000058290555.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 221.151 kcal (2) G-P(sol) polarization free energy of solvation -56.792 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 164.359 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.275 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -50.517 kcal (6) G-S(sol) free energy of system = (1) + (5) 170.634 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 2.16 seconds