Wall clock time and date at job start Tue Mar 31 2020 07:02:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 N 1.46908 * 109.46934 * 2 1 4 4 C 1.46898 * 111.00105 * 301.80204 * 3 2 1 5 5 C 1.50704 * 109.46838 * 287.73885 * 4 3 2 6 6 O 1.21281 * 120.00277 * 357.22944 * 5 4 3 7 7 N 1.34776 * 119.99664 * 177.23823 * 5 4 3 8 8 C 1.46505 * 119.99895 * 179.97438 * 7 5 4 9 9 C 1.50697 * 109.47207 * 89.99548 * 8 7 5 10 10 H 1.08003 * 120.00242 * 0.02562 * 9 8 7 11 11 C 1.37873 * 119.99958 * 179.97438 * 9 8 7 12 12 N 1.31518 * 120.00160 * 0.02562 * 11 9 8 13 13 Si 1.86797 * 120.00103 * 180.02562 * 11 9 8 14 14 H 1.48501 * 109.47365 * 0.02562 * 13 11 9 15 15 H 1.48504 * 109.47333 * 120.00486 * 13 11 9 16 16 H 1.48505 * 109.47484 * 240.00351 * 13 11 9 17 17 C 1.46504 * 120.00282 * 359.97438 * 7 5 4 18 18 C 1.52996 * 109.47053 * 89.99978 * 17 7 5 19 19 C 1.47207 * 109.46605 * 179.97438 * 18 17 7 20 20 N 7.64246 * 75.03651 * 329.21723 * 2 1 3 21 21 C 1.46904 * 110.99860 * 65.75635 * 3 2 1 22 22 C 1.50693 * 109.47115 * 66.04509 * 21 3 2 23 23 C 1.38425 * 120.02600 * 90.00097 * 22 21 3 24 24 F 1.35097 * 120.00742 * 359.70042 * 23 22 21 25 25 C 1.38471 * 119.97203 * 179.97438 * 23 22 21 26 26 C 1.38201 * 120.03096 * 359.97438 * 25 23 22 27 27 C 1.38213 * 120.04803 * 0.02562 * 26 25 23 28 28 C 1.38421 * 120.02769 * 269.97686 * 22 21 3 29 29 F 1.35102 * 120.00977 * 0.02562 * 28 22 21 30 30 H 1.09001 * 109.46859 * 186.24805 * 1 2 3 31 31 H 1.09003 * 109.46774 * 306.24466 * 1 2 3 32 32 H 1.08998 * 109.47452 * 66.25023 * 1 2 3 33 33 H 1.09002 * 109.47497 * 240.00624 * 2 1 3 34 34 H 1.08997 * 109.47285 * 119.99938 * 2 1 3 35 35 H 1.09006 * 109.47108 * 47.73232 * 4 3 2 36 36 H 1.09001 * 109.47220 * 167.73619 * 4 3 2 37 37 H 1.09007 * 109.47009 * 210.00035 * 8 7 5 38 38 H 1.09004 * 109.46735 * 329.99584 * 8 7 5 39 39 H 0.97000 * 120.00128 * 180.02562 * 12 11 9 40 40 H 1.09005 * 109.47125 * 210.00243 * 17 7 5 41 41 H 1.09002 * 109.46923 * 329.99988 * 17 7 5 42 42 H 1.08991 * 109.47491 * 300.00064 * 18 17 7 43 43 H 1.09000 * 109.46839 * 60.00543 * 18 17 7 44 44 H 1.09003 * 109.46919 * 306.04212 * 21 3 2 45 45 H 1.09000 * 109.47009 * 186.04807 * 21 3 2 46 46 H 1.08007 * 119.98132 * 180.02562 * 25 23 22 47 47 H 1.08002 * 119.97792 * 180.02562 * 26 25 23 48 48 H 1.07999 * 119.98602 * 179.97438 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0196 1.3851 0.0000 4 6 1.5137 2.1223 -1.1655 5 6 2.2133 1.6373 -2.4091 6 8 3.0863 0.7994 -2.3261 7 7 1.8690 2.1347 -3.6134 8 6 2.5495 1.6636 -4.8223 9 6 1.8118 0.4753 -5.3832 10 1 0.9246 0.1079 -4.8890 11 6 2.2689 -0.1424 -6.5280 12 7 3.3491 0.3053 -7.1302 13 14 1.3542 -1.6150 -7.2237 14 1 0.1795 -1.9179 -6.3672 15 1 0.8950 -1.3066 -8.6018 16 1 2.2605 -2.7909 -7.2555 17 6 0.8142 3.1465 -3.7137 18 6 1.4330 4.5412 -3.5999 19 6 0.3732 5.5578 -3.7014 20 7 -0.4433 6.3431 -3.7787 21 6 1.6641 2.0691 1.2505 22 6 2.3992 1.4289 2.3997 23 6 3.6482 1.8972 2.7699 24 9 4.2113 2.9244 2.0971 25 6 4.3224 1.3084 3.8264 26 6 3.7488 0.2542 4.5116 27 6 2.5018 -0.2142 4.1429 28 6 1.8259 0.3726 3.0863 29 9 0.6070 -0.0854 2.7261 30 1 -0.3633 -1.0216 0.1118 31 1 -0.3633 0.6076 0.8288 32 1 -0.3634 0.4139 -0.9406 33 1 1.8934 -0.5137 -0.8900 34 1 1.8933 -0.5138 0.8900 35 1 0.4410 1.9552 -1.2636 36 1 1.7049 3.1872 -1.0329 37 1 2.5682 2.4627 -5.5635 38 1 3.5706 1.3737 -4.5747 39 1 3.6705 -0.1290 -7.9358 40 1 0.3088 3.0505 -4.6747 41 1 0.0941 3.0017 -2.9084 42 1 1.9383 4.6372 -2.6391 43 1 2.1531 4.6860 -4.4053 44 1 0.5898 1.9882 1.4161 45 1 1.9429 3.1206 1.1814 46 1 5.2968 1.6739 4.1157 47 1 4.2752 -0.2041 5.3358 48 1 2.0546 -1.0383 4.6787 RHF calculation, no. of doubly occupied orbitals= 68 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000058322916.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 07:02:28 Heat of formation + Delta-G solvation = -54.617326 kcal Electronic energy + Delta-G solvation = -33574.508403 eV Core-core repulsion = 28880.378957 eV Total energy + Delta-G solvation = -4694.129446 eV No. of doubly occupied orbitals = 68 Molecular weight (most abundant/longest-lived isotopes) = 365.166 amu Computer time = 1.10 seconds Orbital eigenvalues (eV) -49.29476 -49.10073 -39.77496 -39.04823 -37.40546 -36.72404 -35.12239 -32.90545 -32.30842 -30.81140 -30.56465 -30.33862 -28.31338 -26.69464 -25.33496 -23.98430 -23.22423 -22.96367 -22.29280 -20.41376 -18.37516 -18.33020 -17.63070 -17.58753 -16.88564 -16.49351 -16.42979 -16.17181 -15.81391 -15.68935 -15.51581 -15.43262 -14.88505 -14.73482 -14.66819 -14.31137 -14.23629 -13.89999 -13.43006 -13.38385 -12.99124 -12.88960 -12.68795 -12.52942 -12.43164 -12.37424 -12.22507 -12.10288 -11.86552 -11.76534 -11.67005 -11.49773 -11.34128 -11.20959 -10.96374 -10.85254 -10.63783 -10.53747 -10.16801 -9.66490 -9.22294 -9.01533 -8.98481 -8.46288 -8.14147 -7.79130 -6.07495 -4.11868 0.67504 0.71853 2.74072 2.82012 3.02541 3.28323 3.34787 3.37353 3.41815 3.56591 3.65732 3.98228 4.14802 4.24679 4.30628 4.40041 4.44693 4.53327 4.85420 4.96190 5.03957 5.09490 5.10271 5.18407 5.25100 5.28414 5.33902 5.38875 5.42184 5.50879 5.56591 5.57696 5.63633 5.68121 5.78163 5.84359 5.85556 5.96890 6.08297 6.13845 6.38916 6.49415 6.83875 7.05378 7.07654 7.40458 7.47591 7.58047 7.89110 8.19514 8.31689 8.87994 9.06778 9.53743 11.00585 Molecular weight = 365.17amu Principal moments of inertia in cm(-1) A = 0.009103 B = 0.002918 C = 0.002533 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3075.107077 B = 9593.423269 C =11049.355600 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.192 4.192 2 C 0.046 3.954 3 N -0.508 5.508 4 C 0.027 3.973 5 C 0.510 3.490 6 O -0.511 6.511 7 N -0.600 5.600 8 C 0.246 3.754 9 C -0.526 4.526 10 H 0.058 0.942 11 C 0.062 3.938 12 N -0.893 5.893 13 Si 0.895 3.105 14 H -0.274 1.274 15 H -0.284 1.284 16 H -0.283 1.283 17 C 0.118 3.882 18 C -0.051 4.051 19 C 0.217 3.783 20 N -0.447 5.447 21 C 0.089 3.911 22 C -0.145 4.145 23 C 0.152 3.848 24 F -0.123 7.123 25 C -0.167 4.167 26 C -0.063 4.063 27 C -0.168 4.168 28 C 0.134 3.866 29 F -0.126 7.126 30 H 0.062 0.938 31 H 0.057 0.943 32 H 0.057 0.943 33 H 0.096 0.904 34 H 0.069 0.931 35 H 0.068 0.932 36 H 0.096 0.904 37 H 0.034 0.966 38 H 0.046 0.954 39 H 0.263 0.737 40 H 0.094 0.906 41 H 0.072 0.928 42 H 0.106 0.894 43 H 0.118 0.882 44 H 0.056 0.944 45 H 0.090 0.910 46 H 0.142 0.858 47 H 0.142 0.858 48 H 0.141 0.859 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.979 3.558 23.290 23.643 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.251 4.251 2 C -0.082 4.082 3 N -0.231 5.231 4 C -0.104 4.104 5 C 0.296 3.704 6 O -0.386 6.386 7 N -0.333 5.333 8 C 0.128 3.872 9 C -0.565 4.565 10 H 0.076 0.924 11 C -0.140 4.140 12 N -0.532 5.532 13 Si 0.723 3.277 14 H -0.198 1.198 15 H -0.210 1.210 16 H -0.209 1.209 17 C -0.009 4.009 18 C -0.093 4.093 19 C -0.101 4.101 20 N -0.124 5.124 21 C -0.039 4.039 22 C -0.147 4.147 23 C 0.132 3.868 24 F -0.101 7.101 25 C -0.186 4.186 26 C -0.081 4.081 27 C -0.187 4.187 28 C 0.114 3.886 29 F -0.105 7.105 30 H 0.081 0.919 31 H 0.076 0.924 32 H 0.076 0.924 33 H 0.114 0.886 34 H 0.087 0.913 35 H 0.085 0.915 36 H 0.114 0.886 37 H 0.052 0.948 38 H 0.065 0.935 39 H 0.072 0.928 40 H 0.112 0.888 41 H 0.091 0.909 42 H 0.124 0.876 43 H 0.136 0.864 44 H 0.074 0.926 45 H 0.109 0.891 46 H 0.160 0.840 47 H 0.160 0.840 48 H 0.159 0.841 Dipole moment (debyes) X Y Z Total from point charges -2.097 4.242 22.950 23.432 hybrid contribution -1.165 -0.990 -0.652 1.662 sum -3.262 3.252 22.298 22.769 Atomic orbital electron populations 1.22467 0.98347 1.02669 1.01574 1.22295 0.92528 0.89357 1.03987 1.61910 1.59294 1.02293 0.99565 1.22210 0.98469 0.99045 0.90643 1.20103 0.83880 0.82606 0.83837 1.90683 1.30978 1.31160 1.85745 1.48220 1.37404 1.39413 1.08305 1.19322 0.93790 0.94597 0.79531 1.21449 1.11662 1.13986 1.09419 0.92421 1.24911 0.95027 0.97309 0.96742 1.69930 1.22536 1.41145 1.19601 0.86488 0.79784 0.82721 0.78686 1.19844 1.21023 1.20896 1.21287 0.90398 0.84894 1.04277 1.19925 0.93067 0.90217 1.06080 1.29113 0.94209 0.93943 0.92790 1.81184 1.10870 1.10962 1.09375 1.20931 0.97412 0.98234 0.87273 1.19739 0.95990 0.98945 1.00048 1.17159 0.90845 0.86997 0.91773 1.91548 1.84180 1.55529 1.78866 1.21226 1.01804 0.98804 0.96809 1.20827 0.93911 0.94687 0.98721 1.21176 0.96621 1.02695 0.98242 1.17234 0.81838 0.94160 0.95368 1.91534 1.40490 1.87567 1.90892 0.91919 0.92380 0.92443 0.88593 0.91283 0.91470 0.88624 0.94828 0.93550 0.92758 0.88809 0.90935 0.87578 0.86425 0.92590 0.89133 0.84020 0.84046 0.84148 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.19 -2.37 8.29 37.16 0.31 -2.07 16 2 C 0.05 0.66 5.21 -3.82 -0.02 0.64 16 3 N -0.51 -7.13 4.31 -237.51 -1.02 -8.15 16 4 C 0.03 0.37 3.90 -4.98 -0.02 0.35 16 5 C 0.51 9.44 7.39 -10.98 -0.08 9.36 16 6 O -0.51 -11.95 14.54 5.56 0.08 -11.86 16 7 N -0.60 -10.94 2.46 -175.05 -0.43 -11.37 16 8 C 0.25 5.83 5.16 -5.19 -0.03 5.80 16 9 C -0.53 -14.01 9.39 -34.44 -0.32 -14.34 16 10 H 0.06 1.54 7.81 -52.48 -0.41 1.13 16 11 C 0.06 1.71 5.46 -17.82 -0.10 1.61 16 12 N -0.89 -25.56 13.29 55.43 0.74 -24.82 16 13 Si 0.90 21.28 29.54 -169.99 -5.02 16.26 16 14 H -0.27 -6.42 7.11 56.52 0.40 -6.02 16 15 H -0.28 -6.63 7.11 56.52 0.40 -6.23 16 16 H -0.28 -6.77 7.11 56.52 0.40 -6.37 16 17 C 0.12 1.56 5.19 -4.04 -0.02 1.54 16 18 C -0.05 -0.54 6.03 -29.52 -0.18 -0.72 16 19 C 0.22 2.62 15.43 -20.77 -0.32 2.30 16 20 N -0.45 -6.55 18.53 42.13 0.78 -5.77 16 21 C 0.09 1.00 4.62 -4.98 -0.02 0.98 16 22 C -0.14 -1.59 4.90 -104.49 -0.51 -2.10 16 23 C 0.15 1.63 7.24 -39.43 -0.29 1.35 16 24 F -0.12 -1.48 16.48 2.25 0.04 -1.45 16 25 C -0.17 -1.37 10.02 -39.51 -0.40 -1.76 16 26 C -0.06 -0.42 10.04 -39.60 -0.40 -0.82 16 27 C -0.17 -1.32 10.02 -39.51 -0.40 -1.71 16 28 C 0.13 1.35 5.89 -39.43 -0.23 1.12 16 29 F -0.13 -1.35 13.07 2.25 0.03 -1.32 16 30 H 0.06 0.74 8.14 -51.93 -0.42 0.32 16 31 H 0.06 0.65 4.92 -51.93 -0.26 0.39 16 32 H 0.06 0.74 6.47 -51.93 -0.34 0.40 16 33 H 0.10 1.72 6.56 -51.93 -0.34 1.38 16 34 H 0.07 0.96 5.41 -51.93 -0.28 0.68 16 35 H 0.07 0.82 4.92 -51.93 -0.26 0.56 16 36 H 0.10 1.03 6.96 -51.93 -0.36 0.67 16 37 H 0.03 0.79 8.07 -51.93 -0.42 0.37 16 38 H 0.05 1.27 7.42 -51.93 -0.39 0.88 16 39 H 0.26 7.14 8.31 -40.82 -0.34 6.80 16 40 H 0.09 1.33 8.07 -51.93 -0.42 0.91 16 41 H 0.07 0.80 6.36 -51.93 -0.33 0.47 16 42 H 0.11 0.91 7.30 -51.93 -0.38 0.53 16 43 H 0.12 1.24 8.14 -51.93 -0.42 0.81 16 44 H 0.06 0.58 5.65 -51.93 -0.29 0.29 16 45 H 0.09 0.93 7.36 -51.93 -0.38 0.54 16 46 H 0.14 0.87 8.06 -52.48 -0.42 0.45 16 47 H 0.14 0.52 8.06 -52.49 -0.42 0.10 16 48 H 0.14 0.81 8.06 -52.49 -0.42 0.38 16 LS Contribution 399.79 15.07 6.02 6.02 Total: -1.00 -33.56 399.79 -7.90 -41.46 By element: Atomic # 1 Polarization: 5.57 SS G_CDS: -6.10 Total: -0.53 kcal Atomic # 6 Polarization: 4.55 SS G_CDS: -3.02 Total: 1.53 kcal Atomic # 7 Polarization: -50.17 SS G_CDS: 0.06 Total: -50.11 kcal Atomic # 8 Polarization: -11.95 SS G_CDS: 0.08 Total: -11.86 kcal Atomic # 9 Polarization: -2.84 SS G_CDS: 0.07 Total: -2.77 kcal Atomic # 14 Polarization: 21.28 SS G_CDS: -5.02 Total: 16.26 kcal Total LS contribution 6.02 Total: 6.02 kcal Total: -33.56 -7.90 -41.46 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000058322916.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -13.156 kcal (2) G-P(sol) polarization free energy of solvation -33.557 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -46.713 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.905 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.461 kcal (6) G-S(sol) free energy of system = (1) + (5) -54.617 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.11 seconds