Wall clock time and date at job start Tue Mar 31 2020 06:30:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30889 * 1 3 3 Si 1.86802 * 119.99945 * 2 1 4 4 H 1.48504 * 109.47081 * 269.99980 * 3 2 1 5 5 H 1.48506 * 109.46839 * 29.99748 * 3 2 1 6 6 H 1.48496 * 109.47105 * 149.99904 * 3 2 1 7 7 C 1.39888 * 119.99860 * 179.97438 * 2 1 3 8 8 H 1.08003 * 119.99412 * 194.29638 * 7 2 1 9 9 C 1.41210 * 120.00055 * 14.30010 * 7 2 1 10 10 C 1.40836 * 120.17746 * 206.06200 * 9 7 2 11 11 C 1.36440 * 119.81024 * 180.02562 * 10 9 7 12 12 C 1.39310 * 120.18448 * 359.97438 * 11 10 9 13 13 O 1.35672 * 119.81453 * 179.97438 * 12 11 10 14 14 C 1.42906 * 116.99749 * 180.02562 * 13 12 11 15 15 C 1.50704 * 109.46983 * 179.97438 * 14 13 12 16 16 O 1.34696 * 120.00105 * 180.02562 * 15 14 13 17 17 N 1.30222 * 119.99968 * 359.97438 * 15 14 13 18 18 C 1.36365 * 119.99995 * 173.95645 * 17 15 14 19 19 N 1.31836 * 126.08153 * 94.62212 * 18 17 15 20 20 C 1.33876 * 109.68162 * 179.97438 * 19 18 17 21 21 C 1.48365 * 125.43789 * 179.97438 * 20 19 18 22 22 C 1.39332 * 119.72823 * 180.02562 * 21 20 19 23 23 C 1.38396 * 119.06919 * 179.97438 * 22 21 20 24 24 C 1.38782 * 118.51437 * 0.02562 * 23 22 21 25 25 C 1.38256 * 119.36568 * 359.97438 * 24 23 22 26 26 N 1.31763 * 120.88968 * 359.74272 * 25 24 23 27 27 N 1.31466 * 109.12379 * 0.02562 * 20 19 18 28 28 N 1.36082 * 126.07719 * 274.31927 * 18 17 15 29 29 H 0.97006 * 126.83393 * 359.96137 * 28 18 17 30 30 C 1.39308 * 120.36725 * 0.25551 * 12 11 10 31 31 C 1.36440 * 120.18299 * 359.48237 * 30 12 11 32 32 H 0.97000 * 119.99618 * 0.02562 * 1 2 3 33 33 H 1.08003 * 120.09489 * 359.97438 * 10 9 7 34 34 H 1.07996 * 119.90421 * 179.97438 * 11 10 9 35 35 H 1.08995 * 109.47334 * 59.99991 * 14 13 12 36 36 H 1.08999 * 109.47074 * 299.99549 * 14 13 12 37 37 H 0.96703 * 117.00390 * 184.97716 * 16 15 14 38 38 H 1.08010 * 120.46371 * 0.02562 * 22 21 20 39 39 H 1.08003 * 120.74231 * 180.02562 * 23 22 21 40 40 H 1.07995 * 120.32029 * 180.02562 * 24 23 22 41 41 H 1.07994 * 119.55433 * 180.02562 * 25 24 23 42 42 H 1.08001 * 119.90798 * 179.72330 * 30 12 11 43 43 H 1.08006 * 120.09546 * 180.25289 * 31 30 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3089 0.0000 0.0000 3 14 2.2429 1.6178 0.0000 4 1 2.4904 2.0464 -1.4001 5 1 1.4402 2.6527 0.7000 6 1 3.5404 1.4402 0.7000 7 6 2.0083 -1.2115 0.0005 8 1 3.0632 -1.2258 0.2315 9 6 1.3350 -2.4156 -0.3010 10 6 1.8156 -3.6403 0.2015 11 6 1.1595 -4.7993 -0.0949 12 6 0.0171 -4.7734 -0.8918 13 8 -0.6291 -5.9304 -1.1823 14 6 -1.7937 -5.8341 -2.0049 15 6 -2.3723 -7.2091 -2.2193 16 8 -3.4805 -7.3640 -2.9691 17 7 -1.8003 -8.2475 -1.6806 18 6 -2.3897 -9.4739 -1.7705 19 7 -2.1396 -10.3904 -2.6846 20 6 -2.9021 -11.4682 -2.4628 21 6 -2.9027 -12.7050 -3.2823 22 6 -3.7489 -13.7585 -2.9426 23 6 -3.7387 -14.9056 -3.7169 24 6 -2.8811 -14.9618 -4.8065 25 6 -2.0681 -13.8790 -5.0860 26 7 -2.1016 -12.7965 -4.3357 27 7 -3.6512 -11.2553 -1.4035 28 7 -3.3365 -9.9715 -0.9292 29 1 -3.7191 -9.5273 -0.1564 30 6 -0.4621 -3.5667 -1.3968 31 6 0.1792 -2.3982 -1.1053 32 1 -0.4849 0.8401 -0.0004 33 1 2.7013 -3.6622 0.8191 34 1 1.5269 -5.7394 0.2893 35 1 -1.5238 -5.3998 -2.9674 36 1 -2.5332 -5.2008 -1.5150 37 1 -3.8570 -8.2534 -3.0177 38 1 -4.4042 -13.6807 -2.0876 39 1 -4.3837 -15.7384 -3.4784 40 1 -2.8496 -15.8426 -5.4307 41 1 -1.3999 -13.9194 -5.9335 42 1 -1.3458 -3.5557 -2.0175 43 1 -0.1959 -1.4630 -1.4943 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000058322938.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:30:24 Heat of formation + Delta-G solvation = 106.264887 kcal Electronic energy + Delta-G solvation = -29583.877908 eV Core-core repulsion = 25211.580931 eV Total energy + Delta-G solvation = -4372.296978 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 365.127 amu Computer time = 1.50 seconds Orbital eigenvalues (eV) -42.42668 -40.39768 -39.85724 -38.77553 -36.52922 -34.97540 -33.49123 -33.34300 -32.76258 -31.94503 -30.54424 -29.74080 -29.32030 -28.16409 -24.93668 -24.85144 -24.01620 -23.12811 -21.66537 -21.14249 -21.11822 -20.24021 -19.51361 -17.62296 -17.40780 -17.29475 -17.02753 -16.53265 -16.16484 -16.09901 -15.98505 -15.59749 -15.27255 -14.69038 -14.39297 -14.21928 -14.19368 -14.00991 -13.54131 -13.36918 -12.87637 -12.82126 -12.44865 -12.28608 -11.97660 -11.80063 -11.60732 -11.49101 -11.18962 -11.10104 -10.85564 -10.70767 -10.41106 -10.28489 -10.26422 -9.99138 -9.83353 -9.81822 -9.59959 -9.44222 -9.11215 -9.03127 -7.72435 -7.07849 -6.75936 -4.32396 0.27865 0.86423 1.16020 1.24709 2.19979 2.36525 2.50494 2.70141 2.91586 3.06595 3.10026 3.10836 3.16552 3.56776 3.79933 3.92334 4.11401 4.26476 4.42689 4.54595 4.57504 4.63164 4.87468 4.89257 5.07953 5.16433 5.28367 5.34462 5.52346 5.61100 5.67081 5.72546 5.80812 5.99374 6.01205 6.21607 6.22757 6.57283 6.64938 6.82617 7.01289 7.22386 7.31337 7.49560 7.49977 7.61417 7.76401 7.81731 7.94894 8.08222 8.32508 8.57480 8.85515 8.91689 10.18592 Molecular weight = 365.13amu Principal moments of inertia in cm(-1) A = 0.030050 B = 0.001429 C = 0.001414 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 931.545108 B =19594.310213 C =19794.050485 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.803 5.803 2 C 0.073 3.927 3 Si 0.910 3.090 4 H -0.268 1.268 5 H -0.279 1.279 6 H -0.263 1.263 7 C -0.460 4.460 8 H 0.077 0.923 9 C 0.088 3.912 10 C -0.194 4.194 11 C -0.104 4.104 12 C -0.014 4.014 13 O -0.299 6.299 14 C 0.132 3.868 15 C 0.435 3.565 16 O -0.504 6.504 17 N -0.497 5.497 18 C 0.451 3.549 19 N -0.506 5.506 20 C 0.278 3.722 21 C 0.204 3.796 22 C -0.135 4.135 23 C -0.078 4.078 24 C -0.162 4.162 25 C 0.103 3.897 26 N -0.445 5.445 27 N -0.291 5.291 28 N -0.490 5.490 29 H 0.443 0.557 30 C -0.176 4.176 31 C -0.131 4.131 32 H 0.279 0.721 33 H 0.101 0.899 34 H 0.100 0.900 35 H 0.102 0.898 36 H 0.103 0.897 37 H 0.410 0.590 38 H 0.144 0.856 39 H 0.141 0.859 40 H 0.140 0.860 41 H 0.163 0.837 42 H 0.096 0.904 43 H 0.125 0.875 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.968 -21.588 -7.288 25.736 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.429 5.429 2 C -0.143 4.143 3 Si 0.734 3.266 4 H -0.194 1.194 5 H -0.204 1.204 6 H -0.187 1.187 7 C -0.490 4.490 8 H 0.096 0.904 9 C 0.086 3.914 10 C -0.214 4.214 11 C -0.123 4.123 12 C -0.057 4.057 13 O -0.215 6.215 14 C 0.055 3.945 15 C 0.213 3.787 16 O -0.299 6.299 17 N -0.240 5.240 18 C 0.085 3.915 19 N -0.239 5.239 20 C -0.004 4.004 21 C 0.065 3.935 22 C -0.157 4.157 23 C -0.103 4.103 24 C -0.183 4.183 25 C -0.056 4.056 26 N -0.154 5.154 27 N -0.124 5.124 28 N -0.215 5.215 29 H 0.290 0.710 30 C -0.195 4.195 31 C -0.150 4.150 32 H 0.090 0.910 33 H 0.119 0.881 34 H 0.118 0.882 35 H 0.119 0.881 36 H 0.120 0.880 37 H 0.267 0.733 38 H 0.162 0.838 39 H 0.159 0.841 40 H 0.158 0.842 41 H 0.180 0.820 42 H 0.114 0.886 43 H 0.142 0.858 Dipole moment (debyes) X Y Z Total from point charges -11.152 -20.978 -7.149 24.811 hybrid contribution -1.174 -0.109 0.489 1.277 sum -12.327 -21.088 -6.660 25.318 Atomic orbital electron populations 1.69810 1.07443 1.29035 1.36642 1.25876 0.94793 1.01235 0.92389 0.86286 0.80416 0.80600 0.79250 1.19358 1.20386 1.18668 1.19512 0.96928 0.90777 1.41817 0.90443 1.17638 0.91944 0.92248 0.89575 1.20637 1.02730 0.92337 1.05689 1.19605 0.94592 0.97801 1.00269 1.18516 0.97306 0.83003 1.06855 1.85941 1.37992 1.31003 1.66551 1.20827 0.90173 0.85160 0.98357 1.25170 0.78910 0.94757 0.79871 1.84269 1.40988 1.39268 1.65353 1.68999 1.27968 0.94012 1.33019 1.22277 0.86987 0.94543 0.87667 1.71277 1.26938 1.01006 1.24676 1.21626 0.92740 0.93404 0.92643 1.18026 0.94091 0.89390 0.92003 1.22061 0.99320 0.93216 1.01087 1.21556 0.97475 0.97472 0.93842 1.22336 0.97130 1.00470 0.98382 1.22848 0.96974 0.87981 0.97795 1.67584 1.18611 1.25783 1.03461 1.78109 1.23769 0.96383 1.14138 1.48693 1.32451 1.13200 1.27127 0.70951 1.20613 1.01355 0.93047 1.04469 1.20989 0.98049 0.96381 0.99601 0.90980 0.88057 0.88208 0.88093 0.87975 0.73261 0.83790 0.84106 0.84246 0.81959 0.88569 0.85756 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.80 -20.00 10.84 55.54 0.60 -19.40 16 2 C 0.07 1.78 5.20 -17.34 -0.09 1.69 16 3 Si 0.91 18.23 29.58 -169.99 -5.03 13.20 16 4 H -0.27 -5.32 7.11 56.52 0.40 -4.92 16 5 H -0.28 -5.48 7.11 56.52 0.40 -5.08 16 6 H -0.26 -5.23 7.11 56.52 0.40 -4.82 16 7 C -0.46 -11.81 9.05 -37.84 -0.34 -12.15 16 8 H 0.08 1.92 7.88 -52.48 -0.41 1.50 16 9 C 0.09 2.26 5.57 -106.81 -0.59 1.66 16 10 C -0.19 -4.60 9.74 -39.25 -0.38 -4.98 16 11 C -0.10 -2.31 9.92 -39.83 -0.40 -2.71 16 12 C -0.01 -0.30 6.71 -38.78 -0.26 -0.56 16 13 O -0.30 -5.55 9.59 -18.72 -0.18 -5.73 16 14 C 0.13 1.82 5.32 36.01 0.19 2.01 16 15 C 0.44 5.60 8.02 -12.96 -0.10 5.50 16 16 O -0.50 -5.33 13.42 -15.84 -0.21 -5.54 16 17 N -0.50 -7.47 9.86 -11.28 -0.11 -7.58 16 18 C 0.45 6.41 6.84 -321.76 -2.20 4.21 16 19 N -0.51 -8.01 11.22 -11.96 -0.13 -8.15 16 20 C 0.28 3.87 7.84 -156.76 -1.23 2.64 16 21 C 0.20 2.48 6.75 -82.94 -0.56 1.92 16 22 C -0.13 -1.18 9.72 -39.12 -0.38 -1.56 16 23 C -0.08 -0.48 10.16 -39.32 -0.40 -0.88 16 24 C -0.16 -0.97 10.11 -39.37 -0.40 -1.37 16 25 C 0.10 0.86 11.18 -17.57 -0.20 0.66 16 26 N -0.44 -5.55 10.27 -9.77 -0.10 -5.65 16 27 N -0.29 -3.62 12.37 32.07 0.40 -3.22 16 28 N -0.49 -5.62 7.52 29.90 0.22 -5.40 16 29 H 0.44 3.78 8.96 -182.34 -1.63 2.14 16 30 C -0.18 -3.75 8.96 -39.83 -0.36 -4.11 16 31 C -0.13 -3.19 8.63 -39.25 -0.34 -3.53 16 32 H 0.28 6.35 8.30 -40.82 -0.34 6.01 16 33 H 0.10 2.24 8.06 -52.48 -0.42 1.82 16 34 H 0.10 2.05 8.06 -52.49 -0.42 1.62 16 35 H 0.10 1.26 7.63 -51.93 -0.40 0.87 16 36 H 0.10 1.22 7.66 -51.93 -0.40 0.82 16 37 H 0.41 3.72 7.36 45.56 0.34 4.05 16 38 H 0.14 1.08 7.81 -52.48 -0.41 0.67 16 39 H 0.14 0.44 8.06 -52.48 -0.42 0.02 16 40 H 0.14 0.39 8.06 -52.49 -0.42 -0.03 16 41 H 0.16 0.91 8.06 -52.49 -0.42 0.49 16 42 H 0.10 1.71 6.27 -52.49 -0.33 1.39 16 43 H 0.12 3.13 6.13 -52.48 -0.32 2.81 16 LS Contribution 384.02 15.07 5.79 5.79 Total: -1.00 -32.27 384.02 -11.61 -43.87 By element: Atomic # 1 Polarization: 14.19 SS G_CDS: -4.82 Total: 9.37 kcal Atomic # 6 Polarization: -3.52 SS G_CDS: -8.04 Total: -11.56 kcal Atomic # 7 Polarization: -50.28 SS G_CDS: 0.88 Total: -49.40 kcal Atomic # 8 Polarization: -10.88 SS G_CDS: -0.39 Total: -11.27 kcal Atomic # 14 Polarization: 18.23 SS G_CDS: -5.03 Total: 13.20 kcal Total LS contribution 5.79 Total: 5.79 kcal Total: -32.27 -11.61 -43.87 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000058322938.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 150.140 kcal (2) G-P(sol) polarization free energy of solvation -32.265 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 117.874 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.610 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.875 kcal (6) G-S(sol) free energy of system = (1) + (5) 106.265 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.50 seconds