Wall clock time and date at job start Tue Mar 31 2020 06:30:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30889 * 1 3 3 Si 1.86802 * 119.99945 * 2 1 4 4 H 1.48504 * 109.47081 * 269.99980 * 3 2 1 5 5 H 1.48506 * 109.46839 * 29.99748 * 3 2 1 6 6 H 1.48496 * 109.47105 * 149.99904 * 3 2 1 7 7 C 1.39888 * 119.99860 * 179.97438 * 2 1 3 8 8 H 1.08003 * 119.99412 * 194.29638 * 7 2 1 9 9 C 1.41210 * 120.00055 * 14.30010 * 7 2 1 10 10 C 1.40836 * 120.17746 * 206.06200 * 9 7 2 11 11 C 1.36440 * 119.81024 * 180.02562 * 10 9 7 12 12 C 1.39310 * 120.18448 * 359.97438 * 11 10 9 13 13 O 1.35672 * 119.81453 * 179.97438 * 12 11 10 14 14 C 1.42906 * 116.99749 * 180.02562 * 13 12 11 15 15 C 1.50704 * 109.46983 * 179.97438 * 14 13 12 16 16 O 1.34696 * 120.00105 * 180.02562 * 15 14 13 17 17 N 1.30222 * 119.99968 * 359.97438 * 15 14 13 18 18 C 1.36365 * 119.99995 * 173.95645 * 17 15 14 19 19 N 1.31836 * 126.08153 * 94.62212 * 18 17 15 20 20 C 1.33876 * 109.68162 * 179.97438 * 19 18 17 21 21 C 1.48365 * 125.43789 * 179.97438 * 20 19 18 22 22 C 1.39332 * 119.72823 * 180.02562 * 21 20 19 23 23 C 1.38396 * 119.06919 * 179.97438 * 22 21 20 24 24 C 1.38782 * 118.51437 * 0.02562 * 23 22 21 25 25 C 1.38256 * 119.36568 * 359.97438 * 24 23 22 26 26 N 1.31763 * 120.88968 * 359.74272 * 25 24 23 27 27 N 1.31466 * 109.12379 * 0.02562 * 20 19 18 28 28 N 1.36082 * 126.07719 * 274.31927 * 18 17 15 29 29 H 0.97006 * 126.83393 * 359.96137 * 28 18 17 30 30 C 1.39308 * 120.36725 * 0.25551 * 12 11 10 31 31 C 1.36440 * 120.18299 * 359.48237 * 30 12 11 32 32 H 0.97000 * 119.99618 * 0.02562 * 1 2 3 33 33 H 1.08003 * 120.09489 * 359.97438 * 10 9 7 34 34 H 1.07996 * 119.90421 * 179.97438 * 11 10 9 35 35 H 1.08995 * 109.47334 * 59.99991 * 14 13 12 36 36 H 1.08999 * 109.47074 * 299.99549 * 14 13 12 37 37 H 0.96703 * 117.00390 * 184.97716 * 16 15 14 38 38 H 1.08010 * 120.46371 * 0.02562 * 22 21 20 39 39 H 1.08003 * 120.74231 * 180.02562 * 23 22 21 40 40 H 1.07995 * 120.32029 * 180.02562 * 24 23 22 41 41 H 1.07994 * 119.55433 * 180.02562 * 25 24 23 42 42 H 1.08001 * 119.90798 * 179.72330 * 30 12 11 43 43 H 1.08006 * 120.09546 * 180.25289 * 31 30 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3089 0.0000 0.0000 3 14 2.2429 1.6178 0.0000 4 1 2.4904 2.0464 -1.4001 5 1 1.4402 2.6527 0.7000 6 1 3.5404 1.4402 0.7000 7 6 2.0083 -1.2115 0.0005 8 1 3.0632 -1.2258 0.2315 9 6 1.3350 -2.4156 -0.3010 10 6 1.8156 -3.6403 0.2015 11 6 1.1595 -4.7993 -0.0949 12 6 0.0171 -4.7734 -0.8918 13 8 -0.6291 -5.9304 -1.1823 14 6 -1.7937 -5.8341 -2.0049 15 6 -2.3723 -7.2091 -2.2193 16 8 -3.4805 -7.3640 -2.9691 17 7 -1.8003 -8.2475 -1.6806 18 6 -2.3897 -9.4739 -1.7705 19 7 -2.1396 -10.3904 -2.6846 20 6 -2.9021 -11.4682 -2.4628 21 6 -2.9027 -12.7050 -3.2823 22 6 -3.7489 -13.7585 -2.9426 23 6 -3.7387 -14.9056 -3.7169 24 6 -2.8811 -14.9618 -4.8065 25 6 -2.0681 -13.8790 -5.0860 26 7 -2.1016 -12.7965 -4.3357 27 7 -3.6512 -11.2553 -1.4035 28 7 -3.3365 -9.9715 -0.9292 29 1 -3.7191 -9.5273 -0.1564 30 6 -0.4621 -3.5667 -1.3968 31 6 0.1792 -2.3982 -1.1053 32 1 -0.4849 0.8401 -0.0004 33 1 2.7013 -3.6622 0.8191 34 1 1.5269 -5.7394 0.2893 35 1 -1.5238 -5.3998 -2.9674 36 1 -2.5332 -5.2008 -1.5150 37 1 -3.8570 -8.2534 -3.0177 38 1 -4.4042 -13.6807 -2.0876 39 1 -4.3837 -15.7384 -3.4784 40 1 -2.8496 -15.8426 -5.4307 41 1 -1.3999 -13.9194 -5.9335 42 1 -1.3458 -3.5557 -2.0175 43 1 -0.1959 -1.4630 -1.4943 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000058322938.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:30:21 Heat of formation + Delta-G solvation = 84.047783 kcal Electronic energy + Delta-G solvation = -29584.841314 eV Core-core repulsion = 25211.580931 eV Total energy + Delta-G solvation = -4373.260383 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 365.127 amu Computer time = 3.18 seconds Orbital eigenvalues (eV) -43.40454 -41.17157 -40.84143 -40.22070 -38.17104 -35.98361 -35.19514 -34.24045 -33.42974 -32.86410 -31.67492 -31.45432 -30.76119 -29.43458 -26.62204 -25.67779 -24.79848 -24.08977 -22.93448 -22.77101 -22.01428 -21.65467 -20.50805 -19.22512 -18.64856 -18.39781 -17.92774 -17.67118 -17.23472 -17.09227 -16.84124 -16.61754 -16.49006 -16.00520 -15.71910 -15.52654 -14.96783 -14.91524 -14.78389 -14.52985 -14.14536 -14.01214 -13.85679 -13.65460 -13.34219 -13.10509 -12.82648 -12.81354 -12.73023 -12.54516 -12.31269 -11.78485 -11.76139 -11.59785 -11.42444 -11.20330 -11.18116 -10.90459 -10.86678 -10.52863 -10.47155 -9.80079 -9.51266 -8.86573 -8.54971 -6.20698 -0.44482 0.16819 0.26016 0.36314 0.96705 1.10380 1.26303 1.30609 1.42904 1.54181 1.55097 1.59243 2.22516 2.25959 2.77292 2.85736 2.91076 3.01551 3.35325 3.74431 3.81749 3.98273 4.03168 4.10195 4.12783 4.20757 4.22895 4.36326 4.43595 4.47330 4.71661 4.76939 4.81801 4.89695 5.03928 5.07536 5.14605 5.19236 5.22070 5.41857 5.54350 5.68476 5.69728 5.78183 6.00091 6.10984 6.27207 6.54819 6.64175 6.67735 6.79877 6.98120 6.99980 7.11223 8.41249 Molecular weight = 365.13amu Principal moments of inertia in cm(-1) A = 0.030050 B = 0.001429 C = 0.001414 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 931.545108 B =19594.310213 C =19794.050485 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.832 5.832 2 C 0.035 3.965 3 Si 0.979 3.021 4 H -0.263 1.263 5 H -0.270 1.270 6 H -0.262 1.262 7 C -0.499 4.499 8 H 0.072 0.928 9 C 0.054 3.946 10 C -0.204 4.204 11 C -0.118 4.118 12 C 0.005 3.995 13 O -0.310 6.310 14 C 0.123 3.877 15 C 0.448 3.552 16 O -0.493 6.493 17 N -0.528 5.528 18 C 0.447 3.553 19 N -0.543 5.543 20 C 0.269 3.731 21 C 0.165 3.835 22 C -0.135 4.135 23 C -0.072 4.072 24 C -0.144 4.144 25 C 0.087 3.913 26 N -0.490 5.490 27 N -0.289 5.289 28 N -0.476 5.476 29 H 0.455 0.545 30 C -0.173 4.173 31 C -0.150 4.150 32 H 0.286 0.714 33 H 0.105 0.895 34 H 0.114 0.886 35 H 0.121 0.879 36 H 0.128 0.872 37 H 0.418 0.582 38 H 0.151 0.849 39 H 0.179 0.821 40 H 0.180 0.820 41 H 0.182 0.818 42 H 0.134 0.866 43 H 0.112 0.888 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.567 -23.431 -8.301 28.319 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.459 5.459 2 C -0.178 4.178 3 Si 0.801 3.199 4 H -0.188 1.188 5 H -0.194 1.194 6 H -0.186 1.186 7 C -0.529 4.529 8 H 0.090 0.910 9 C 0.051 3.949 10 C -0.224 4.224 11 C -0.137 4.137 12 C -0.038 4.038 13 O -0.225 6.225 14 C 0.047 3.953 15 C 0.226 3.774 16 O -0.288 6.288 17 N -0.273 5.273 18 C 0.081 3.919 19 N -0.277 5.277 20 C -0.013 4.013 21 C 0.027 3.973 22 C -0.157 4.157 23 C -0.097 4.097 24 C -0.164 4.164 25 C -0.072 4.072 26 N -0.201 5.201 27 N -0.122 5.122 28 N -0.203 5.203 29 H 0.305 0.695 30 C -0.191 4.191 31 C -0.169 4.169 32 H 0.097 0.903 33 H 0.123 0.877 34 H 0.132 0.868 35 H 0.138 0.862 36 H 0.146 0.854 37 H 0.277 0.723 38 H 0.169 0.831 39 H 0.197 0.803 40 H 0.197 0.803 41 H 0.199 0.801 42 H 0.152 0.848 43 H 0.129 0.871 Dipole moment (debyes) X Y Z Total from point charges -12.789 -22.838 -8.151 27.415 hybrid contribution -0.795 0.178 0.703 1.076 sum -13.584 -22.660 -7.448 27.449 Atomic orbital electron populations 1.69853 1.08611 1.30211 1.37240 1.26628 0.95573 1.04096 0.91536 0.85237 0.78962 0.76327 0.79370 1.18791 1.19437 1.18624 1.19721 0.97005 0.92075 1.44068 0.90990 1.17983 0.93113 0.92995 0.90760 1.20779 1.03180 0.92515 1.05926 1.19834 0.95202 0.97904 1.00723 1.18540 0.96539 0.83783 1.04963 1.85914 1.39609 1.29652 1.67331 1.21175 0.89136 0.86234 0.98792 1.24881 0.79131 0.93972 0.79414 1.84250 1.40002 1.39947 1.64560 1.68969 1.29168 0.94701 1.34433 1.22123 0.87502 0.94241 0.88054 1.71211 1.28246 1.02110 1.26100 1.22121 0.92345 0.93780 0.93042 1.18178 0.96263 0.89910 0.92959 1.22224 0.98598 0.93253 1.01634 1.22038 0.97410 0.97341 0.92954 1.22770 0.95054 1.00587 0.98015 1.23338 0.97953 0.87920 0.97965 1.67468 1.19944 1.28121 1.04559 1.78060 1.23701 0.96525 1.13871 1.48587 1.31757 1.12868 1.27073 0.69492 1.20896 1.02081 0.91931 1.04209 1.20983 0.98514 0.97047 1.00370 0.90315 0.87655 0.86766 0.86199 0.85419 0.72308 0.83110 0.80346 0.80295 0.80065 0.84803 0.87064 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.83 -42.15 10.84 21.82 0.24 -41.91 16 2 C 0.04 1.73 5.20 85.23 0.44 2.18 16 3 Si 0.98 37.75 29.58 68.60 2.03 39.78 16 4 H -0.26 -9.83 7.11 99.48 0.71 -9.12 16 5 H -0.27 -9.90 7.11 99.48 0.71 -9.19 16 6 H -0.26 -9.97 7.11 99.48 0.71 -9.26 16 7 C -0.50 -26.46 9.05 23.40 0.21 -26.25 16 8 H 0.07 3.72 7.88 -2.91 -0.02 3.70 16 9 C 0.05 2.82 5.57 -21.28 -0.12 2.70 16 10 C -0.20 -9.91 9.74 22.49 0.22 -9.69 16 11 C -0.12 -5.24 9.92 22.11 0.22 -5.02 16 12 C 0.01 0.22 6.71 22.79 0.15 0.37 16 13 O -0.31 -10.98 9.59 -89.89 -0.86 -11.84 16 14 C 0.12 3.09 5.32 71.24 0.38 3.47 16 15 C 0.45 10.87 8.02 88.35 0.71 11.57 16 16 O -0.49 -9.62 13.42 -79.61 -1.07 -10.69 16 17 N -0.53 -15.60 9.86 -304.00 -3.00 -18.60 16 18 C 0.45 12.71 6.84 261.12 1.79 14.49 16 19 N -0.54 -17.58 11.22 -191.76 -2.15 -19.73 16 20 C 0.27 7.63 7.84 137.50 1.08 8.71 16 21 C 0.16 4.03 6.75 41.98 0.28 4.32 16 22 C -0.13 -2.20 9.72 22.57 0.22 -1.98 16 23 C -0.07 -0.67 10.16 22.44 0.23 -0.44 16 24 C -0.14 -1.26 10.11 22.40 0.23 -1.03 16 25 C 0.09 1.34 11.18 84.71 0.95 2.29 16 26 N -0.49 -12.36 10.27 -184.83 -1.90 -14.26 16 27 N -0.29 -7.17 12.37 -52.46 -0.65 -7.81 16 28 N -0.48 -10.80 7.52 -59.32 -0.45 -11.25 16 29 H 0.46 7.47 8.96 -213.10 -1.91 5.56 16 30 C -0.17 -7.16 8.96 22.11 0.20 -6.96 16 31 C -0.15 -7.40 8.63 22.48 0.19 -7.20 16 32 H 0.29 13.13 8.30 -92.71 -0.77 12.36 16 33 H 0.11 4.83 8.06 -2.91 -0.02 4.81 16 34 H 0.11 4.64 8.06 -2.91 -0.02 4.62 16 35 H 0.12 2.64 7.63 -2.39 -0.02 2.62 16 36 H 0.13 2.63 7.66 -2.39 -0.02 2.61 16 37 H 0.42 7.19 7.36 -74.06 -0.55 6.65 16 38 H 0.15 2.10 7.81 -2.91 -0.02 2.08 16 39 H 0.18 0.28 8.06 -2.91 -0.02 0.26 16 40 H 0.18 0.12 8.06 -2.91 -0.02 0.09 16 41 H 0.18 1.80 8.06 -2.91 -0.02 1.77 16 42 H 0.13 4.41 6.27 -2.91 -0.02 4.39 16 43 H 0.11 5.73 6.13 -2.91 -0.02 5.72 16 Total: -1.00 -73.35 384.02 -1.77 -75.12 By element: Atomic # 1 Polarization: 31.00 SS G_CDS: -1.34 Total: 29.66 kcal Atomic # 6 Polarization: -15.84 SS G_CDS: 7.38 Total: -8.47 kcal Atomic # 7 Polarization: -105.65 SS G_CDS: -7.91 Total: -113.56 kcal Atomic # 8 Polarization: -20.60 SS G_CDS: -1.93 Total: -22.53 kcal Atomic # 14 Polarization: 37.75 SS G_CDS: 2.03 Total: 39.78 kcal Total: -73.35 -1.77 -75.12 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000058322938.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 159.166 kcal (2) G-P(sol) polarization free energy of solvation -73.349 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 85.817 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.769 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.118 kcal (6) G-S(sol) free energy of system = (1) + (5) 84.048 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 3.19 seconds